TCONS_00045550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045550
Unique NameTCONS_00045550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045550 ID=TCONS_00045550|Name=TCONS_00045550|organism=Clytia hemisphaerica|type=transcript|length=509bp
GACTCTTGCTAAGGAAATTAGCATAAAAGTGTTCACTTCCATGGGGAAGA
ATCCGGTGTCAGCCAATAACGCTATCTTTGTAATTACAAATGTTTCAGAT
GGAAAGATTGAATTCAAAGCCTCCGCACCAGTTGGGTATGCAGAAGAAGA
CAACAGCGATACCAGTTTACCACCGCACAATGAAATCAAGCCAACCTTGG
TGCCAAAGTCAAGCTGCTTAACCGACGTTCAAGAGAAGCAGATCACAGAC
CTCGTCGAGGAATTCAGTGGCTTATTTCCAGATGCTTCGCAGCCACTTGG
CTCAACAGACAGAATCGAGCACAAGATAGAATTATTGGACCCAACTCCCA
TCCGACAACAACCATACCGTGTTGGACCCTTCAAAAGGAAAGAGATCgag
aatcaagttcaagatttGTTGCGCAAAGGCATCATACGGGAAAGCAATTC
AGAATTCAGCAGCCCAATTGTTTTGGTTGGAAAAGCCGGAGGAGGTTGGA
GAATGTGTG
Run BLAST on NCBI

protein sequence of TCONS_00045550-protein

>TCONS_00045550-protein ID=TCONS_00045550-protein|Name=TCONS_00045550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
TLAKEISIKVFTSMGKNPVSANNAIFVITNVSDGKIEFKASAPVGYAEED
NSDTSLPPHNEIKPTLVPKSSCLTDVQEKQITDLVEEFSGLFPDASQPLG
STDRIEHKIELLDPTPIRQQPYRVGPFKRKEIENQVQDLLRKGIIRESNS
EFSSPIVLVGKAGGGWRMC
Run BLAST on NCBI

transcript from alignment at sc0008270:2..510

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045550 ID=TCONS_00045550|Name=TCONS_00045550|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at sc0008270:2..510 (Clytia hemisphaerica)
CACACATTCTCCAACCTCCTCCGGCTTTTCCAACCAAAACAATTGGGCTG
CTGAATTCTGAATTGCTTTCCCGTATGATGCCTTTGCGCAACaaatcttg
aacttgattctcGATCTCTTTCCTTTTGAAGGGTCCAACACGGTATGGTT
GTTGTCGGATGGGAGTTGGGTCCAATAATTCTATCTTGTGCTCGATTCTG
TCTGTTGAGCCAAGTGGCTGCGAAGCATCTGGAAATAAGCCACTGAATTC
CTCGACGAGGTCTGTGATCTGCTTCTCTTGAACGTCGGTTAAGCAGCTTG
ACTTTGGCACCAAGGTTGGCTTGATTTCATTGTGCGGTGGTAAACTGGTA
TCGCTGTTGTCTTCTTCTGCATACCCAACTGGTGCGGAGGCTTTGAATTC
AATCTTTCCATCTGAAACATTTGTAATTACAAAGATAGCGTTATTGGCTG
ACACCGGATTCTTCCCCATGGAAGTGAACACTTTTATGCTAATTTCCTTA
GCAAGAGTC

Coding sequence (CDS) from alignment at sc0008270:2..510

>TCONS_00045550 ID=TCONS_00045550|Name=TCONS_00045550|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0008270:2..510 (Clytia hemisphaerica)
ACACATTCTCCAACCTCCTCCGGCTTTTCCAACCAAAACAATTGGGCTGC
TGAATTCTGAATTGCTTTCCCGTATGATGCCTTTGCGCAACaaatcttga
acttgattctcGATCTCTTTCCTTTTGAAGGGTCCAACACGGTATGGTTG
TTGTCGGATGGGAGTTGGGTCCAATAATTCTATCTTGTGCTCGATTCTGT
CTGTTGAGCCAAGTGGCTGCGAAGCATCTGGAAATAAGCCACTGAATTCC
TCGACGAGGTCTGTGATCTGCTTCTCTTGAACGTCGGTTAAGCAGCTTGA
CTTTGGCACCAAGGTTGGCTTGATTTCATTGTGCGGTGGTAAACTGGTAT
CGCTGTTGTCTTCTTCTGCATACCCAACTGGTGCGGAGGCTTTGAATTCA
ATCTTTCCATCTGAAACATTTGTAATTACAAAGATAGCGTTATTGGCTGA
CACCGGATTCTTCCCCATGGAAGTGAACACTTTTATGCTAATTTCCTTAG
CAAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029127XLOC_029127Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045550-proteinTCONS_00045550-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045550-exon-sc0008270-1491911889:2..510TCONS_00045550-exon-sc0008270-1491911889:2..510Clytia hemisphaericaexon
TCONS_00045550-exon-sc0008270-1510915933:2..510TCONS_00045550-exon-sc0008270-1510915933:2..510Clytia hemisphaericaexon
TCONS_00045550-exon-sc0008270-1575043694:2..510TCONS_00045550-exon-sc0008270-1575043694:2..510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008270supercontigsc0008270:2..510 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354777	0.345964	1.87459	1.70299	3.50854	2.14238	8.81837	11.9565	1.89344	1.97502	2.39625	5.04064	6.99989	7.35113	1.07442	5.33272	2.48575	1.54689	0.125712	0	0.686038	1.84044	0.542374	0.86292	3.68212	11.2184	0.48647	0	0.131258	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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