TCONS_00045569 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045569
Unique Name	TCONS_00045569
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	711

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_1:165079..171341+

transcript sequence

>TCONS_00045569 ID=TCONS_00045569|Name=TCONS_00045569|organism=Clytia hemisphaerica|type=transcript|length=711bp
GGTTATCCTCCCTGGCGAAAGTAtggcaaattacgcatgcgcattATATG
GACTGGAATTGGAGCATCCACTATATgacGGTGCTGAAGCTTTTAAAGAC
AGAAATCTACACATCACAATCAACATGTTTGGAGACCTTAAAAGTGCTGC
TGGTGTCAAAGAATTAAATTGCTTTTTAGCCGATAAGAGTTATATTGAAG
GATACATTCCTTCCCAAGCTGATGTCACTGTCTTTGCTGCTCTTGCTTCA
GCCCCTGGAACAGAGTTTGCCCATGCTTTGAGATGGTACAATCACATTCG
CTCTTACTCTTGTGATGAAAAGAAAAGCTTTGCAAGCGCTACTGGTGATC
ATGGTGTGAGAGGAGCTGAACAAGCTAAGAAAGACGACGATGATGAATTG
GATTTGTTTGGGTCTGACTCTGACGAAGAAGAAGAGactgaagaagaaaa
gaaagtcaGAGAAGAACGACTTGCCAAATATGCTGCCAAAAAAGCCAACA
AGAAAACTGTAATCGCTAAATCAAGTCTTTTAATCGACGTCAAACCATGG
GATGATGAAACTGACATGAAAGCTCTAGAAGCAGAAGTTCGAAAGATCGA
AGCCGAAGGGCTTTTGTGGGGTGCAAGCAAACTCATACCTGTCGGATACG
GAATCAAGAAACTTCAGATCAACGCCGTCATCGTAGACGATAAGATTTCG
ACGGACTNGGT

Run BLAST on NCBI

transcript from alignment at scaffold_1:165079..171341+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045569 ID=TCONS_00045569|Name=TCONS_00045569|organism=Clytia hemisphaerica|type=transcript|length=6263bp|location=Sequence derived from alignment at scaffold_1:165079..171341+ (Clytia hemisphaerica)
GGTTATCCTCCCTGGCGAAAGTAtggcaaattacgcatgcgcattATATG
GACTGGAATTGGAGCATCCACTATATgacgtgagtatcacagctcaaata
aatatcaatattttatctgatgaaaacttgacctctggtACCCAGGGTAA
TGTGATGACagttattAAATTTGGCCTCGGTTTCCTCCACGTTCTCACGG
CTCTTGTTCTcgttttattttttcgttctttcGTTCTTTCTAGCGCTGGC
GAGCAGCTAGAAatctttattttgaatattttttatgaatggtCACAcag
tttttcttattttcatggCTCCCGTAAGAGGGTTTTTCTAAGCCGTGTGA
CCATTTTAGAGGCACTCGTGGTATTTTTGGTTTCTCACCGAAATATCAAT
CTTTTCACTTCTACTTTCAAAAGGGTGCTGAAGCTTTTAAAGACAGAAAT
CTACACATCACAATCAACATGTTTGGAGACCTTAAAAGTGCTGCTGGTGT
CAAAGAATTAAATTGCTTTTTAGCCGATAAGAGTTATATTGAAGGGTAAT
AAATGATTTTATTTCCTTGTAGTTAAAAAGTAATAATAATACTTGGAACA
GAGGACGGACGACGTGAGGCTAAAAGGGTTGAAGATATATATatacttct
ttccatcttaactcatattgagctGCTTTCTTCCTTATagtcattttaga
tcactagttttacatTGACGGACTTCCATGTCattacatttttcttttca
actcCAACCTGATCGATTTTCTGtactgtgaatgttcattctagattttt
gttgtaatttgtattgtctttttgttttgtgagttttgtctttagtgttt
ccattttgagtagttcaaggttttatacttctagactatatatatgtgaa
gaaataagtatttctgtccaactatatatCCTGAGCCTTAGCTTTATTAG
ctactgtgaagtcgggtaactttttttttttatgtacAATTGACAGTTGA
ATTAGTGCGATTGTTTTGCCTGATTCTTTTTAGCCAGTCAGCGTGTGCAA
AAGCTCAATTAATATTTATtccaaatctggatgaaaaagatcaaaacact
AACCTGTGCAGATTCTCTTACAGAGCCAAAGCCTTTAAAGTAAAAACCTG
TCATGTGAAGAGGTCAAAATTTGCTCTGAGATGAGAGATTTTGAGACACT
TAACTCAATAACTACTTGTTATATATATTAAAGAAAGCCAGGAattaaaa
gttttgtaaaaatggcTGCATTTAAAAGACTGATGTCACCTcgacaatca
gtgacaaaatacttggcacaaaagggaaattcaccggggtgttttaaaac
cacaatcgatttgcaagtgctctaaagtaggtttgaagggcagagtttta
actctgagttttaacgctagacttaagacttaggaccttaggatctgaga
atccaaaagttcaaaaatggtttagtagggcttgaaatatagcctagaaa
ccaataaatccctctaagatcgaaataatcaatgaaatcaagttgaaggc
ctgaaattgacattctcactcgaacttcaattttcaaaaaatggtaaatt
agctaAAAGTGCCgatatattatggcactgattgtagattcataacaaat
tgaaatatgtgattttgtcaaaatatgtCATCAGTTTAAAAAGTTATACC
AGTTTTAAACATCAAGACATTAGACACCACTGCAtgatttataaagtttt
ggttcttgttttcaaattacTTGTTACTTCTGTGTATCATAACGTGATTA
TCCATGCTTTTTTTATCTCAGATACATTCCTTCCCAAGCTGATGTCACTG
TCTTTGCTGCTCTTGCTTCAGCCCCTGGAACAGAGTTTGCCCATGCTTTG
AGATGGTACAATCACATTCGCTCTTACTCTTGTGATGAAAAGAAAAGGTA
ATTTTTAGTTAAAATAGATACAAGCTTTTGATGGGACCAATAACGAACTT
TCAAGGACAATTTTTCTTTCATAGCAGGGCCTGAAATATATAACAATATT
TTGATGGTGGAATCTATTTTGGTCGGACATTTCATTGATTGGGTCAGAct
atgtccgatgtccgaccatTATTTCAGGCCCTGCATACTGTTTTTTGGCT
TCTTAAATCAAGGAATGTTCATCTTATCTATTCCATATGAGAGAAAATAA
ACTTTCTTTACCTTTTTTATATTTAGCTTTGCAAGCGCTACTGGTGATCA
TGGTGTGAGAGGAGCTGAACAAGCTAAGAAAGACGACGATGATGAATTGG
ATTTGTTTGGGTCTGACTCTGACGAAGAAGAAGAGGTATGGTTCTGAGtg
gtttttgaattttctttctggATGATGTAACCAGataaatttttgtatat
ttaccaTTATTTTAGTGTTGAAAGCTTGATCTGCGTTACAAAGCATTCCT
GTCATATTCTTGATATTTCTTTAGATGGTAAAAATCAGTTTATGGGAAAA
AAGTTCAAAGCTTTAAATGAACTAAGGAACTCAACAGTCTTTAACTGTTA
AATTTCTACCTCTAGCtgatattaaaattcaaaattttagctttgaaTAA
ACCAAGAAACCCAAGAGTACTTCAATTCTTACTTACTGAAACTATCATTA
TTCCCAAATCAATTCATAGactgaagaagaaaagaaagtcaGAGAAGAAC
GACTTGCCAAATATGCTGCCAAAAAAGCCAACAAGAGTAAGTTTACTGAA
CATGGCAAACCATCATGCTAAATTTCCATTCCACTTTTGANtaaaagtga
tttttgaagccggaactttctaaaaatcgccggaacagcctattttcgcc
ggaaaaacggtatttcttgaatttcttgagctttactttatattttttca
tgaaattttgcacactggcGCCATATGATAATatcaaaatgtgacggagc
ccgattttcgaaaaacatttttttccggccgaaaatgtcagaaatatgcc
ggaaaaaccggttttttgacattttctcgaattttcattttcattttttt
ctgattttttgttgaaagatgcgtattcgcaatgctcaaaacatggccga
gttcgatttttgagaaaaaattttttccggttgaaaattccggaaatctc
cgtttttgcatattttcattggattttttccttatatttctatgtttttc
acacaaaaacattattgataacaatgctcaccatcaagcatgattcaatN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaacgcta
tgttttctgactgattttttttcatttttctccttgcattgctatctaac
tttcatcatcaggtaggtccattcagcatctagcttgttataTTTAGCTT
TGCAAGCGCTACTGGTGATCATGGTGTGAGAGGAGCTGCACAAGCTAAGA
AAGACGACGATGATGAATTGGATTTGTTTGGGTCTGACTCTGACGAAGAA
GAAGAGGTAtggttttgagtggtttttgaattttctttctggATGATGTA
ACCAGataaatttttgtatatttaccaTTATTTTAGTGTTGAAAGCTTGA
TCTGCGTTATAAAGCATTCTTGTCATCTTCTTGATATTTCTTTGGATGGT
AAAAATCAGTTTAtgggaaaaaagttccaaagcTTTAAATGAACTAAGGA
ACTCAACAGTCTTTAACTGTTAAATTTCTACCTCTAGCTGATattataat
tcaaaattttagctttgaaTAAACCAAGAAACCCAAGAGTACTTCAATTC
TTACTTACTGAAACTATCATTATTCCCAAATCAATTCATAGactgaagaa
gaaaagaaagtcaGAGAAGAACGACTTGCCAAATATGCTGCCAAAAAAGC
CAACAAGAGTAAGTTTACTGAACATGGCAAACCATCATGCTAAATTTCCA
TTCCACTTTTGAGTTGTTTTTTATGCGGCTGTTCTTTATTTTTACGTACA
GCTTTTGGTATATGCCTTAAATTGATTCAAATTATAATTTTCCATTTAGA
AACTGTAATCGCTAAATCAAGTCTTTTAATCGACGTCAAACCATGGGATG
ATGAAACTGGTAAGTAACCCATACagtattttatgaaaatattagctaat
aaaatttgattttattagATGTTTTTTCCTAGGAATAATTGTTttgtgtt
ttaattttcaatttttttttaattgctttaAACACAAAAAACTTGCTTAA
TGTATGAATTTTGTATGTTTTTAGACATGAAAGCTCTAGAAGCAGAAGTT
CGAAAGATCGAAGCCGAAGGGCTTTTGTGGGGTGCAAGTGAGTATCTTTT
TCTTCTTGATATGTAATTATAAACGTTAATTGTTCTTGAAGATTTCCAAT
AACTTATTTCTTAACCCTTTGCATCACCTTAAAtgagaaaaatatataaa
ttacTGACCAAAacctaaaattggaaaaatgccCAATTGGAAAAATGCCC
AATTTGAATTGATCAACATGATAGAATAGAATCCAAAATGGTGAACACTG
AAAACAGAAAAATACAGAAAACATGTGAGGGGATGCCAAAAATGATGGAA
AGACACTGAACTTGGCCTTAAGGCTTAGCCGTTACACAACTGCACCCTAT
TGAATTGAAATGTGAATTTGTATCTTTTTGTGAAATATTACAAACTATTT
CCCTCAAAATTTACGAGGCTACTCCATGTAACACAAATTTGCCTAAATCA
TCCTTAGGTTACTGTTTAATTAGAAAGTATTAAGTATTCATGACAAAAGC
TTCCAGCCAAAATTCCCAACATCTACCACAGGTCAAAAGGTCAATGTCAC
TTGACAATCTTcatctaccttaagggaagaaatttttgcggaatttaatt
tcgcgtaagagagtttcaaaatggcaaatttcgcggaagttaatttcgcg
aatgagctgaattcaaaagtttcacggaatttaattttgcgattgagaaa
tttcaaaagaattttttttacagagaaagtgtttttcataattttcatca
aaattcgtgaaattaaattccgtgaaaatttcttccgtgaaaatttcttc
ccttaaggtaccaaAGATGCTTCCCCTATTCAAAATTAGGTTTATTATTG
GAGGGTTTATAAGCATAAATAGGCTTTTTTATTCTGCAACATGTTTAAAA
CTTAGGTTATGTTCTTATTTGATGTAAGTTCTATCTGTGGTGAATCATTA
TTATTCTTCACTTTTCTCTTTAGGCAAACTCATACCTGTCGGATACGGAA
TCAAGAAACTTCAGATCAACGCCGTCATCGTAGACGATAAGGTCAGTAAA
TGAAGTTTGTTTTAGGTTGAGATGTTGTTTTCCTTGCTCATTCCGATGAT
TAGATGAAACTCACACACTTACTTATTTGAAACATGTGAAAATATTCTGC
AAATATGAGGATTGAACAATAATGCTCCCATTGTATTTCTTTAGACTTCA
GCCTTTTTATGTTACACTAATCCTGCTTGTTTTGTTTATAAGCATGTTCT
TTTGGAAAACAGGCTCGGTTATTCTTAGCTCTTTGATTCATTTAAAATGG
AAAAGAGAATGAATCTTCCCAAATAAACAGCCCATGACTACTGACCCACT
ACCAAAGCTCACTGATATTCTTatgatatgcttatttttcaCCAAATCCA
AGTAttagtatgcttataaacgttatgcttataaaagaaaaacgtgtatc
gtCCTGTTCAATGATTACTACATATACTCACACATTTACTTATTTGATAT
ATCTGTGAAAATATTCTGCAAATATGAGAACCAGGGCGAAGTTTTAGTTA
CTGTCAGGTCTTTTTACTTTGTCTAACCAGTTTTGAATTCTGTTCAGATA
ATCCAATGATTATTATAAATCACACACATTCTTTGATATTCGTGAAAATA
TTCTGCAAATATGAGGATTTACTGATAATGCTGTTCCACCTTTCTATTTC
GGTTTATGCTGTTTCATAcatcatgaaaaatgttttccttttccAGATTT
CGACGGACTNGGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029135	XLOC_029135	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:165079..171341 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1224.05	1235.8	774.157	642.1	130.763	93.6256	192.239	228.161	352.208	267.96	293.338	423.849	568.525	398.72	1083.16	1012.75	765.53	875.453	701.53	757.291	1120.57	1062.71	1238.81	1248.42	161.402	135.284	944.341	1156.23	842.69	955.379

Blast

[Close]

BLAST of TCONS_00045569 vs. Swiss-Prot (Human)
Match: EF1B (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 3.675e-53
Identity = 113/200 (56.50%), Postives = 140/200 (70.00%), Query Frame = 2

Query:  128 FGDLKSAAGVKELNCFLADKSYIEGYIPSQADVTVFAALASAPGTEFAHALRWYNHIRSYSCDEKKSFA---SATGDHGVRGAEQAKKXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXLXXXXXXXXXXXTVIAKSSLLIDVKPWDDETDMKALEAEVRKIEAEGLLWGASKLIPVGYGIKKLQINAVIVDDKISTD 706
            FGDLKS AG++ LN +LADKSYIEGY+PSQADV VF A++S P  +  HALRWYNHI+SY   EK S      A G +G    E        +            D+EEE+EE K++REERLA+Y +KKA K  ++AKSS+L+DVKPWDDETDM  LE  VR I+A+GL+WG+SKL+PVGYGIKKLQI  V+ DDK+ TD
Sbjct:    3 FGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIKSYE-KEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 201

The following BLAST results are available for this feature:

BLAST of TCONS_00045569 vs. Swiss-Prot (Human)

BLAST of TCONS_00045569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EF1B	3.675e-53	56.50	Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2...	[more]

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TCONS_00045569 (transcript) - C. hemisphaerica