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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045572 ID=TCONS_00045572|Name=TCONS_00045572|organism=Clytia hemisphaerica|type=transcript|length=1128bp
ctttttccatcTTACATTTGAACACTCGATCCAGCAAAGTCTTCTATCTC
TCAATAtgGCGTCACATCCATCCTTACCTGTTGTTAGGACTTCgtatttt
catttcaatctACAGTATTGTGTTTATGGGTCTTTCCATCTATGCTTACG
AAGCTTCAAGAATGTGGTTACTACATATCACAACATGGAACTATATTCTT
TCAACGCTTTATTTTGTTCTGGTGATTGGTATCGGTTTAAAAGAATTGTT
CAGTGAGAGACGACAATCGATTTCTTCTTATTCGGTCATTAGTATTTCAC
CGCGCGAACATGAGGACGGAGAGTTGACGGAACCTGCTCAGCGTACAGGT
AATGCAATCCCGATCATTTTACTGGATGGGAAAGAGATTATTTTCAACTA
CGACAGCGATGCGAGTGATAGTGACGACGATGACGTAATAGATAttgacg
atgacgtcatcagcgtcGGATATCAATTACCGATTTTCTATAAAATGACG
TATTGCATTTTTAACGTATCGGGAAACTTGAGCGTCGTAATAGCAATCGC
TTACTGGAGTATGCTTCATAATTACGACATCCCAATTTTACTGAATTTGA
CGTCATATATACAAATTGACGGAAGTGTAATTATACTTTTCTGGTTTTTA
CTTGAAGTGATTTTTAATGATATTCCAATTCATATTTTACATTTCGTGTA
CCCTCTCGTCACGGTGATCGTGTATTTCGTTACGTACATCGTGTACACCG
TGTCAACAGGTCACGTAGTATATGACAATATCAATTTTATCGACCACCCT
GGACATGCaggttttgttgttttgatttttgcgtTCGCTGTTTTGCTAAT
TCAGCTGGTGTTATTTCTATTGGAGcaattgaaaagatatttagcTGATC
GCTTGAACAAGTTGAGAAAAGAATCAAGAGCCTACGCAGAAGATTCGTGA
TTGATTAATACAAAATGTTTTGGCATGATaacttgcaattttttaacCTG
TAGCTTTTAATCAACTGAATTCACTGAATTCCAATCTTAGTCAAATCCCA
ATCGATGAAGATTCTTTTTATTATATCTCAATGAGAGTCATCATAGCTGA
CTTTTTGTCTTGTTTATATAAGATTTTC Run BLAST on NCBI protein sequence of TCONS_00045572-protein >TCONS_00045572-protein ID=TCONS_00045572-protein|Name=TCONS_00045572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
FSILHLNTRSSKVFYLSIWRHIHPYLLLGLRIFISIYSIVFMGLSIYAYE
ASRMWLLHITTWNYILSTLYFVLVIGIGLKELFSERRQSISSYSVISISP
REHEDGELTEPAQRTGNAIPIILLDGKEIIFNYDSDASDSDDDDVIDIDD
DVISVGYQLPIFYKMTYCIFNVSGNLSVVIAIAYWSMLHNYDIPILLNLT
SYIQIDGSVIILFWFLLEVIFNDIPIHILHFVYPLVTVIVYFVTYIVYTV
STGHVVYDNINFIDHPGHAGFVVLIFAFAVLLIQLVLFLLEQLKRYLADR
LNKLRKESRAYAEDS Run BLAST on NCBI transcript from alignment at scaffold_1:189733..191150+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045572 ID=TCONS_00045572|Name=TCONS_00045572|organism=Clytia hemisphaerica|type=transcript|length=1418bp|location=Sequence derived from alignment at scaffold_1:189733..191150+ (Clytia hemisphaerica)
ctttttccatcTTACATTTGAACACTCGATCCAGCAAAGTCTTCTATCTC
TCAATAGTAAGTctaaacaatatttttcagttttacgttttcatttttca
aattcattcttaacatattctaccaatttaaattttcaaatttcacctac
ttAGTCTTGTAGAGTTTTCAGTCAACTCACAATTTTTAGTGTCAATTTTT
CGAGTTATCTTTCCGAATAAGTCTCTAGATTTGAAAACAACTTTGTCTCC
CATTACTCGTGCTTTATTGAGGCTCATCTTTAGACTTTATGCAGTGAAGC
TAAAATAAATGCTAATATATTTCTGAtttgattttctatttttcagtgGC
GTCACATCCATCCTTACCTGTTGTTAGGACTTCgtattttcatttcaatc
tACAGTATTGTGTTTATGGGTCTTTCCATCTATGCTTACGAAGCTTCAAG
AATGTGGTTACTACATATCACAACATGGAACTATATTCTTTCAACGCTTT
ATTTTGTTCTGGTGATTGGTATCGGTTTAAAAGAATTGTTCAGTGAGAGA
CGACAATCGATTTCTTCTTATTCGGTCATTAGTATTTCACCGCGCGAACA
TGAGGACGGAGAGTTGACGGAACCTGCTCAGCGTACAGGTAATGCAATCC
CGATCATTTTACTGGATGGGAAAGAGATTATTTTCAACTACGACAGCGAT
GCGAGTGATAGTGACGACGATGACGTAATAGATAttgacgatgacgtcat
cagcgtcGGATATCAATTACCGATTTTCTATAAAATGACGTATTGCATTT
TTAACGTATCGGGAAACTTGAGCGTCGTAATAGCAATCGCTTACTGGAGT
ATGCTTCATAATTACGACATCCCAATTTTACTGAATTTGACGTCATATAT
ACAAATTGACGGAAGTGTAATTATACTTTTCTGGTTTTTACTTGAAGTGA
TTTTTAATGATATTCCAATTCATATTTTACATTTCGTGTACCCTCTCGTC
ACGGTGATCGTGTATTTCGTTACGTACATCGTGTACACCGTGTCAACAGG
TCACGTAGTATATGACAATATCAATTTTATCGACCACCCTGGACATGCag
gttttgttgttttgatttttgcgtTCGCTGTTTTGCTAATTCAGCTGGTG
TTATTTCTATTGGAGcaattgaaaagatatttagcTGATCGCTTGAACAA
GTTGAGAAAAGAATCAAGAGCCTACGCAGAAGATTCGTGATTGATTAATA
CAAAATGTTTTGGCATGATaacttgcaattttttaacCTGTAGCTTTTAA
TCAACTGAATTCACTGAATTCCAATCTTAGTCAAATCCCAATCGATGAAG
ATTCTTTTTATTATATCTCAATGAGAGTCATCATAGCTGACTTTTTGTCT
TGTTTATATAAGATTTTC Coding sequence (CDS) from alignment at scaffold_1:189733..191150+ >TCONS_00045572 ID=TCONS_00045572|Name=TCONS_00045572|organism=Clytia hemisphaerica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_1:189733..191150+ (Clytia hemisphaerica)
ttttccatcTTACATTTGAACACTCGATCCAGCAAAGTCTTCTATCTCTC
AATAtgGCGTCACATCCATCCTTACCTGTTGTTAGGACTTCgtattttca
tttcaatctACAGTATTGTGTTTATGGGTCTTTCCATCTATGCTTACGAA
GCTTCAAGAATGTGGTTACTACATATCACAACATGGAACTATATTCTTTC
AACGCTTTATTTTGTTCTGGTGATTGGTATCGGTTTAAAAGAATTGTTCA
GTGAGAGACGACAATCGATTTCTTCTTATTCGGTCATTAGTATTTCACCG
CGCGAACATGAGGACGGAGAGTTGACGGAACCTGCTCAGCGTACAGGTAA
TGCAATCCCGATCATTTTACTGGATGGGAAAGAGATTATTTTCAACTACG
ACAGCGATGCGAGTGATAGTGACGACGATGACGTAATAGATAttgacgat
gacgtcatcagcgtcGGATATCAATTACCGATTTTCTATAAAATGACGTA
TTGCATTTTTAACGTATCGGGAAACTTGAGCGTCGTAATAGCAATCGCTT
ACTGGAGTATGCTTCATAATTACGACATCCCAATTTTACTGAATTTGACG
TCATATATACAAATTGACGGAAGTGTAATTATACTTTTCTGGTTTTTACT
TGAAGTGATTTTTAATGATATTCCAATTCATATTTTACATTTCGTGTACC
CTCTCGTCACGGTGATCGTGTATTTCGTTACGTACATCGTGTACACCGTG
TCAACAGGTCACGTAGTATATGACAATATCAATTTTATCGACCACCCTGG
ACATGCaggttttgttgttttgatttttgcgtTCGCTGTTTTGCTAATTC
AGCTGGTGTTATTTCTATTGGAGcaattgaaaagatatttagcTGATCGC
TTGAACAAGTTGAGAAAAGAATCAAGAGCCTACGCAGAAGATTCGTGAtt
ttccatcTTACATTTGAACACTCGATCCAGCAAAGTCTTCTATCTCTCAA
TAtgGCGTCACATCCATCCTTACCTGTTGTTAGGACTTCgtattttcatt
tcaatctACAGTATTGTGTTTATGGGTCTTTCCATCTATGCTTACGAAGC
TTCAAGAATGTGGTTACTACATATCACAACATGGAACTATATTCTTTCAA
CGCTTTATTTTGTTCTGGTGATTGGTATCGGTTTAAAAGAATTGTTCAGT
GAGAGACGACAATCGATTTCTTCTTATTCGGTCATTAGTATTTCACCGCG
CGAACATGAGGACGGAGAGTTGACGGAACCTGCTCAGCGTACAGGTAATG
CAATCCCGATCATTTTACTGGATGGGAAAGAGATTATTTTCAACTACGAC
AGCGATGCGAGTGATAGTGACGACGATGACGTAATAGATAttgacgatga
cgtcatcagcgtcGGATATCAATTACCGATTTTCTATAAAATGACGTATT
GCATTTTTAACGTATCGGGAAACTTGAGCGTCGTAATAGCAATCGCTTAC
TGGAGTATGCTTCATAATTACGACATCCCAATTTTACTGAATTTGACGTC
ATATATACAAATTGACGGAAGTGTAATTATACTTTTCTGGTTTTTACTTG
AAGTGATTTTTAATGATATTCCAATTCATATTTTACATTTCGTGTACCCT
CTCGTCACGGTGATCGTGTATTTCGTTACGTACATCGTGTACACCGTGTC
AACAGGTCACGTAGTATATGACAATATCAATTTTATCGACCACCCTGGAC
ATGCaggttttgttgttttgatttttgcgtTCGCTGTTTTGCTAATTCAG
CTGGTGTTATTTCTATTGGAGcaattgaaaagatatttagcTGATCGCTT
GAACAAGTTGAGAAAAGAATCAAGAGCCTACGCAGAAGATTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045572-exon-scaffold_1-1491911889:189733..189788 | TCONS_00045572-exon-scaffold_1-1491911889:189733..189788 | Clytia hemisphaerica | exon |
| TCONS_00045572-exon-scaffold_1-1510915933:189733..189788 | TCONS_00045572-exon-scaffold_1-1510915933:189733..189788 | Clytia hemisphaerica | exon |
| TCONS_00045572-exon-scaffold_1-1575043694:189733..189788 | TCONS_00045572-exon-scaffold_1-1575043694:189733..189788 | Clytia hemisphaerica | exon |
| TCONS_00045572-exon-scaffold_1-1491911889:190079..191150 | TCONS_00045572-exon-scaffold_1-1491911889:190079..191150 | Clytia hemisphaerica | exon |
| TCONS_00045572-exon-scaffold_1-1510915933:190079..191150 | TCONS_00045572-exon-scaffold_1-1510915933:190079..191150 | Clytia hemisphaerica | exon |
| TCONS_00045572-exon-scaffold_1-1575043694:190079..191150 | TCONS_00045572-exon-scaffold_1-1575043694:190079..191150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:189733..191150 + |
Blast
The following BLAST results are available for this feature:
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