TCONS_00045575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045575
Unique NameTCONS_00045575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045575 ID=TCONS_00045575|Name=TCONS_00045575|organism=Clytia hemisphaerica|type=transcript|length=624bp
AATACTATGTAGCCATTATGAATTTGGCTTAATATTGATATGCTTCAATT
TACTAAAAAGAGATTATCCGATTATTAAAAGTATACGCCAAGATaaataa
gaaatatttacaatatctatcatacaaaaaatcctatttaaaataatatt
aataTGAGTAggttacaaaaatataatatctaAAACTGCATTAAATAAAG
AGATGTTTTTATAACAAAACTATTTACTATAGAGCGCTGAAACTCAAAGA
ACAGCCATGAAATCATCCAGTTTCTTTGATATGATTAAATTCTGAGGAAT
AAATTTCAGAGATTTGGTGATAAAAAGTACAGCGAATATTACTTTAAATT
TCGCTGATGATTCCGCTTAAATCTCACCAAACTTAATCTCACTAAGGAAA
TGGATTAATTGATAAGATTGTTGTATATTCATTGGTCGATGCAAGTCGAT
AGCATATTATCTCTAGCTGAGTATTAGCAGCTTCTTGAACAAAGTCTTTA
CTCTGTTTCGTTTCAGACATGAAGAATATTATACAAAAGGAGAAGACAGC
TAAACAATTTCTACGCCTGTTACCAGCTAAAAGAAAACTCAAAAGGATTA
AATCAGCATTTGGATGAAGGCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_1:130318..130941-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045575 ID=TCONS_00045575|Name=TCONS_00045575|organism=Clytia hemisphaerica|type=transcript|length=624bp|location=Sequence derived from alignment at scaffold_1:130318..130941- (Clytia hemisphaerica)
AATACTATGTAGCCATTATGAATTTGGCTTAATATTGATATGCTTCAATT
TACTAAAAAGAGATTATCCGATTATTAAAAGTATACGCCAAGATAAATAA
GAAATATTTACAATATCTATCATACAAAAAATCCTATTTAAAATAATATT
AATATGAGTAGGTTACAAAAATATAATATCTAAAACTGCATTAAATAAAG
AGATGTTTTTATAACAAAACTATTTACTATAGAGCGCTGAAACTCAAAGA
ACAGCCATGAAATCATCCAGTTTCTTTGATATGATTAAATTCTGAGGAAT
AAATTTCAGAGATTTGGTGATAAAAAGTACAGCGAATATTACTTTAAATT
TCGCTGATGATTCCGCTTAAATCTCACCAAACTTAATCTCACTAAGGAAA
TGGATTAATTGATAAGATTGTTGTATATTCATTGGTCGATGCAAGTCGAT
AGCATATTATCTCTAGCTGAGTATTAGCAGCTTCTTGAACAAAGTCTTTA
CTCTGTTTCGTTTCAGACATGAAGAATATTATACAAAAGGAGAAGACAGC
TAAACAATTTCTACGCCTGTTACCAGCTAAAAGAAAACTCAAAAGGATTA
AATCAGCATTTGGATGAAGGCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029139XLOC_029139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045575-exon-scaffold_1-1575043694:130318..130941TCONS_00045575-exon-scaffold_1-1575043694:130318..130941Clytia hemisphaericaexon
TCONS_00045575-exon-scaffold_1-1510915933:130318..130941TCONS_00045575-exon-scaffold_1-1510915933:130318..130941Clytia hemisphaericaexon
TCONS_00045575-exon-scaffold_1-1491911889:130318..130941TCONS_00045575-exon-scaffold_1-1491911889:130318..130941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:130318..130941 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.13017	0	0	4.38087	2.38917	7.3639	5.66117	5.68743	4.14546	4.62632	4.38237	2.95962	0.825073	0.252038	0.67884	2.98514	3.94323	2.03133	2.6606	9.84513	10.2075	0.786366	2.6246	0.950361	1.85113	1.99277	0.26922	0.0948856	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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