TCONS_00045594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045594
Unique NameTCONS_00045594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045594 ID=TCONS_00045594|Name=TCONS_00045594|organism=Clytia hemisphaerica|type=transcript|length=508bp
TGGTTTATGTTTCAGTTTCATTGACGCGTCTTTATTCTGAAAAATCTCCG
AAGATGGTGCTACAATCCATTTACAATGTGGACGGTGCTTCAAAGTTACC
GAAACTTCAAGTGCCCTTAGAAGGATGTTTCCAAGATGTTGCTGGTGCTG
GTGATGGTGTTGGAGAATGCAATGAGAATGAAGACATCAGAGTGGCGTTC
ATACGAGAAGCCATCAACAAAACAGTCGAAGAATTGAGAGAAGTCGTCTT
AAATGGAGTCCAATGAAAAGACGGTCATATACAAGAGAAAATCACGGTAA
GATAGAAAACTTTTAAGGTTTTCTTTGTGTGGGAAATTTCTTAACGcctt
taatcaaatttttaatcaaaaacatcaatttttttcatttgcttgaaacg
gtatatataaatttttaagaatgagCCCGACTGACTACGAAgactaaaat
tttaagaacaaattaaggacattttttaaggcgctttgtggactcaacga
tgtaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_10:9..770+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045594 ID=TCONS_00045594|Name=TCONS_00045594|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at scaffold_10:9..770+ (Clytia hemisphaerica)
TGGTTTATGTTTCAGTTTCATTGACGCGTCTTTATTCTGAAAAATCTCCG
AAGATGGTGCTACAATCCATTTACAATGTGGACGGTGCTTCAAAGTTACC
GAAACTTCAAGTGCCCTTAGAAGGATGTTTCCAAGATGTTGCTGGTGCTG
GTGATGGTGTTGGAGAATGCAATGAGAATGAAGACATCAGAGTGGCGTTC
ATACGGTAAGTCCGGTTAATGAGATGTAGCCAGACAATCATTCTAAGTCA
TTATCATCATTTGATTTGGTATGTACGTGTCCCTAGAGAGAATATCAGGA
AATTAAATACTTCTGCCCAAATGTTTTGTGTTTGATAAGGTTTCCAAAGA
AGAATGGATTTTGTGCTCAGCACAGCGGTAGTATCCCGCAAATTAAGTTC
AATGAGAATGAGTTCTATGTAGGCGAATGTTCTTCACACACTATTTTTTT
CGTTCACAGAGAAGCCATCAACAAAACAGTCGAAGAATTGAGAGAAGTCG
TCTTAAATGGAGTCCAATGAAAAGACGGTCATATACAAGAGAAAATCACG
GTAAGATAGAAAACTTTTAAGGTTTTCTTTGTGTGGGAAATTTCTTAACG
cctttaatcaaatttttaatcaaaaacatcaatttttttcatttgcttga
aacggtatatataaatttttaagaatgagCCCGACTGACTACGAAgacta
aaattttaagaacaaattaaggacattttttaaggcgctttgtggactca
acgatgtaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029155XLOC_029155Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045594-exon-scaffold_10-1491911889:9..213TCONS_00045594-exon-scaffold_10-1491911889:9..213Clytia hemisphaericaexon
TCONS_00045594-exon-scaffold_10-1510915933:9..213TCONS_00045594-exon-scaffold_10-1510915933:9..213Clytia hemisphaericaexon
TCONS_00045594-exon-scaffold_10-1575043694:9..213TCONS_00045594-exon-scaffold_10-1575043694:9..213Clytia hemisphaericaexon
TCONS_00045594-exon-scaffold_10-1491911889:468..770TCONS_00045594-exon-scaffold_10-1491911889:468..770Clytia hemisphaericaexon
TCONS_00045594-exon-scaffold_10-1510915933:468..770TCONS_00045594-exon-scaffold_10-1510915933:468..770Clytia hemisphaericaexon
TCONS_00045594-exon-scaffold_10-1575043694:468..770TCONS_00045594-exon-scaffold_10-1575043694:468..770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:9..770 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
49.4682	46.4092	31.1366	27.9933	0.800062	1.01155	5.64432	1.99941	10.4301	4.96692	8.29624	8.5544	9.1395	8.32172	14.1875	13.9204	14.0499	14.5377	5.61407	5.21774	11.5507	11.0785	22.7897	21.748	6.11492	8.18614	6.23729	3.12546	9.08244	11.2551
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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