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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045623 ID=TCONS_00045623|Name=TCONS_00045623|organism=Clytia hemisphaerica|type=transcript|length=1809bpRun BLAST on NCBI transcript from alignment at scaffold_10:283238..285046- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045623 ID=TCONS_00045623|Name=TCONS_00045623|organism=Clytia hemisphaerica|type=transcript|length=1809bp|location=Sequence derived from alignment at scaffold_10:283238..285046- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00045623 vs. Swiss-Prot (Human)
Match: ZN782 (Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1) HSP 1 Score: 330.872 bits (847), Expect = 4.446e-103 Identity = 166/312 (53.21%), Postives = 213/312 (68.27%), Query Frame = -1
Query: 460 FECNDCG-ACYTSKEFLGQHFVQKHHVINN-LNCAVCGKHFTQKYNLKEHFKTHTGEKPFKCEECGKLFTQKYNLKEHFKTHTGEKPFKCEECGIHFTQKGNLKKHLRTHTGEKPFKCEECGKQFTQNSNLKTHLRTHSGGKPFKCEECGKLFTQKYNLTEHFKTHTGEKPFKCQECGIHFTQKGNLKKHLRTHSGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGKQFTQNSNLKKHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGEKQFECQECGKCFMQKGTLKTYTRTHDGGKMW 1389
+E N+CG +C + + + QK H C CGK F++K L++H +THTGEKP+KC+ C K F+ K L+ H +THTGEKPF+C ECG F K L H RTHTGEKPF+C ECGK F+ S L+ H RTH+G +P+KC+ECGK F K L +H +THTGEKP+KC +CG F QK L+ H R H+G KP+KC CG+ F+QK NL H +THTGEKP++CEECGK F Q SNL+ H RTHTGEK +EC ECGK F +K L++H RTHTGEK + C +CG+ F QK L+ + RTH G K +
Sbjct: 366 YEYNECGKSCSMNSHLI---WPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPY 674 HSP 2 Score: 324.709 bits (831), Expect = 9.438e-101 Identity = 162/306 (52.94%), Postives = 208/306 (67.97%), Query Frame = -1
Query: 472 FECNDCGACYTSKEFLGQHFVQKHHVINNLNCAVCGKHFTQKYNLKEHFKTHTGEKPFKCEECGKLFTQKYNLKEHFKTHTGEKPFKCEECGIHFTQKGNLKKHLRTHTGEKPFKCEECGKQFTQNSNLKTHLRTHSGGKPFKCEECGKLFTQKYNLTEHFKTHTGEKPFKCQECGIHFTQKGNLKKHLRTHSGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGKQFTQNSNLKKHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGEKQFECQECGKCFMQKGTLKTYTRTHDG 1389
+EC +CG ++ K L +H + H C C K F+ K L+ H +THTGEKPF+C ECGK F K L H +THTGEKPF+C ECG F+ L+ H RTHTGE+P+KC+ECGK F S L+ H RTH+G KP+KC +CGK F QK L H + HTGEKP+KC CG F+QK NL+ H RTH+G KP++CEECGK F QK NL H +THTGEKP++C ECGK F++ S L+KH RTHTGEK + C +CG+ F QK L+ H RTHTGEK ++C +CG+ F QK +L+ + + H G
Sbjct: 394 YECPECGKAFSEKSRLRKH-QRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKAHPG 698 HSP 3 Score: 293.508 bits (750), Expect = 6.098e-89 Identity = 144/279 (51.61%), Postives = 192/279 (68.82%), Query Frame = -1
Query: 553 FECNDCGACYTSKEFLGQHFVQKHHVINNLNCAVCGKHFTQKYNLKEHFKTHTGEKPFKCEECGKLFTQKYNLKEHFKTHTGEKPFKCEECGIHFTQKGNLKKHLRTHTGEKPFKCEECGKQFTQNSNLKTHLRTHSGGKPFKCEECGKLFTQKYNLTEHFKTHTGEKPFKCQECGIHFTQKGNLKKHLRTHSGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGKQFTQNSNLKKHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGE 1389
++C+ C +++K L H + H C CGK F K L H +THTGEKPF+C ECGK F+ L+ H +THTGE+P+KC+ECG F K L+KH RTHTGEKP+KC +CGK F Q S L+ H R H+G KP+KC CG+ F+QK NL H +THTGEKP++C+ECG F QK NL+ H RTH+G KP++C ECGK F++K L +H +THTGEKP+ C +CG+ F+Q SNL+ H RTHTGEK ++C +CG+ F QK +L+ H + H G+
Sbjct: 422 YKCDGCDKAFSAKSGLRIH-QRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKAHPGD 699 HSP 4 Score: 285.034 bits (728), Expect = 8.288e-86 Identity = 142/276 (51.45%), Postives = 184/276 (66.67%), Query Frame = -1
Query: 460 CGKHFTQKYNLKEHFKTHTGEKPFKCEECGKLFTQKYNLKEHFKTHTGEKPFKCEECGIHFTQKGNLKKHLRTHTGEKPFKCEECGKQFTQNSNLKTHLRTHSGGKPFKCEECGKLFTQKYNLTEHFKTHTGEKPFKCQECGIHFTQKGNLKKHLRTHSGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGKQFTQNSNLKKHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGEKQFECQECGKCFMQKGTLKTYTRTHDGGKMW 1287
C + F+ + H K H KP++ ECGK + +L K+HTGEKP++C ECG F++K L+KH RTHTGEKP+KC+ C K F+ S L+ H RTH+G KPF+C ECGK F K L H +THTGEKPF+C ECG F+ L+ H RTH+G +P+KC+ECGK F K L +H +THTGEKP+KC +CGK F Q S L+ H R HTGEK ++C CG+ F QK L+ H RTHTGEK ++C+ECGK F QK L+ + RTH G K +
Sbjct: 343 CTETFSYQSTFSVHQKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPY 618 HSP 5 Score: 258.07 bits (658), Expect = 7.686e-76 Identity = 142/322 (44.10%), Postives = 191/322 (59.32%), Query Frame = -1
Query: 460 NYFECNDCGACY---TSKEFLG-QHFVQKHHVINNLNCAV------CGKHFTQKYNLKEHFKTHTGEKPFKCEECGKLFTQKYNLKEHFKTHTGEKPFKCEECGIHFTQKGNLKKHLRTHTGEKPFKCEECGKQFTQNSNLKTHLRTHSGGKPFKCEECGKLFTQKYNLTEHFKTHTGEKPFKCQECGIHFTQKGNLKKHLRTHSGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGKQFTQNSNLKKHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGEKQFECQECGKCFMQKGTLKTYTRTHDGGKMW 1395
+++E ND G C+ T K G + F QK H+ + + GK F + L H +TH +K C + F+ + H K H KP++ ECG + +L ++HTGEKP++C ECGK F++ S L+ H RTH+G KP+KC+ C K F+ K L H +THTGEKPF+C ECG F K L H RTH+G KPF+C ECGK F+ L H +THTGE+P+KC+ECGK F S L+KH RTHTGEK ++C +CGK F QK L+ H R HTGEK ++C CG+ F QK L+ + RTH G K +
Sbjct: 269 SHYEFNDTGNCFCRITHKTLTGGKSFSQKSHIREHHRVHIGVKPFEYGKSFNRNSTLPVHQRTHATDKYSDYHPCTETFSYQSTFSVHQKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPY 590 The following BLAST results are available for this feature:
BLAST of TCONS_00045623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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