TCONS_00045645 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045645
Unique Name	TCONS_00045645
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	910

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_100:132065..140166+
coding sequence from alignment at scaffold_100:132065..140166+

transcript sequence

>TCONS_00045645 ID=TCONS_00045645|Name=TCONS_00045645|organism=Clytia hemisphaerica|type=transcript|length=910bp
ATTTTTTATCATCAACTTTAAATTTTTGTCTATAttttcaatagaaaaaa
tatcatcaacgAAGGAGAGCTAAATAACACACTCTCAAATCACGACTTTC
GATTGTAGAATTCTTTTCCACGGCCAAGATGGGTATTGACTTGGACCATC
GCAAAGACAAGAAGAAAAGCCGAAAGGCTCCAGTCTCCCAGGACCCCTAC
ATTCGCCTTTTGGTGAAATTGTACCGCTTTCTTGCTCGAAGAACTAACTC
AAAGTTCAATGAAGTTATCTTAAAGAGATTGTTTATGAGCCGTATCAACA
GACCACCACTCTCCATTGCTCGCATTGCCAGAAGAGTAAGCAAACCAGGA
TGTGAAGGAAAAATCATTGTCTGTGTTGGATCAATTACTGATGACCTAAG
ATTGACAACTGTACCCAAATTAAAGGTTTGTGCTCTGAGATTCACTGAAG
GAGCAAGAACAAGAATTACAAAAGCTGGTGGTGAATGCATCACCTTCGAT
CAATTGGCCCTCAAAGCTCCAACTGGCAAAGGCACTCTTTTAATCCAAGG
CCCAAGAAACTCTCGTGAATCATGCAGGCATTTTGGACGTGCTCCAGGTG
TTCCCCACAGCTCTACCAAGCCATTTGTTCGAGCAAAGGGACGCAAATTC
GAAAAGGCCCGTGGTCGTCGTGCAAGTCGTGGTTACAAAGTGTAAAATTC
TTGGctgtaataaaaatgatggttaTCACAAtcaatgtttcttttctttc
cttATTAATATTCTTGCGATCTTTGACATCGAATTATGTCCATTTCTAGC
TGAAATCTGCTTTTCGGAGGTCCTCTAattaagggcagaaagtttgagac
cgaaaagtcgcgaaatttcgcggatttaagtttcgggtttttttcttttt
taagaaaatt

Run BLAST on NCBI

protein sequence of TCONS_00045645-protein

>TCONS_00045645-protein ID=TCONS_00045645-protein|Name=TCONS_00045645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MGIDLDHRKDKKKSRKAPVSQDPYIRLLVKLYRFLARRTNSKFNEVILKR
LFMSRINRPPLSIARIARRVSKPGCEGKIIVCVGSITDDLRLTTVPKLKV
CALRFTEGARTRITKAGGECITFDQLALKAPTGKGTLLIQGPRNSRESCR
HFGRAPGVPHSSTKPFVRAKGRKFEKARGRRASRGYKV

Run BLAST on NCBI

transcript from alignment at scaffold_100:132065..140166+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045645 ID=TCONS_00045645|Name=TCONS_00045645|organism=Clytia hemisphaerica|type=transcript|length=8102bp|location=Sequence derived from alignment at scaffold_100:132065..140166+ (Clytia hemisphaerica)
ATTTTTTATCATCAACTTTAAATTTTTGTCTATAttttcaatagaaaaaa
tatcatcaacgAAGGAGAGCTAAATAACACACTCTCAAATCACGACTTTC
GATTGTAGAATTCTTTTCCACGGCCAAGATGGTGGGTACATCTTCTGAGT
TTTATGATAATATACCTCTACTCTATCTTGCTTTATCTTTCGAATCGTTG
CTGGAAGCTGAAAATGGATAATGGATTTCTACTCTCTATACCTTTTGGTT
TTTATTTGTTAGGGTATTGACTTGGACCATCGCAAAGACAAGAAGAAAAG
CCGAAAGGCTCCAGTCTCCCAGGACCCCTACATTCGCCTTTTGGTGAAAG
TAAGTTTTAGGTTTAAGTCCTTGAATTTCAACTGCTTCTGTTGGTTTTCA
cttgaaacaaaattttgactatGATGTTGATTATCAGCTTCAAGGGTGTT
CacacttttttaaattattactGTAGTTCAGAAGCTGGCTGGAGTAGAGC
TCAACTACTTTCTTGCCTTTAATAATTTTGATGGGCTATTGCAgtgccat
cattcaaatcagaaagtgAAGATTGTACAAANTTACACGAAATTGCACTC
CTACATAAGCAAAGTTACATGTAGATGTTGCTAATCATTAAATCATaaat
ttagtcaaatttttggtgTTTTAACTGGTTTTTATGCAAAATCGTCTTTT
TCATTCTAAATAAATGCCTATTTTTTATCATCAACTTTAAATTTTTGTCT
ATAttttcaatagaaaaaatatcatcaacgAAGGAGAGCTAAATAACACA
CTCTCAAATCACGACTTTCGATTGTAGAATTCTTTTCCACGGCCAAGATG
GTGGGTACATCTTCTGAGTTTTATGATAATATACCTCTACTCTATCTTGC
TTTATCTTTCGAATCGTTGCTGGAAGCTGAAAATGGATAATGGATTTCTA
CTCTCTATACCTTTTGGTTTTTATTTGTTAGGGTATTGACTTGGACCATC
GCAAAGACAAGAAGAAAAGCCGAAAGGCTCCAGTCTCCCAGGACCCCTAC
ATTCGCCTTTTGGTGAAAGTAAGTTTTAGGTTTAAGTCCTTGAATTTCAA
CTGCTTCTGTTGGTTTTCActtgaaacaaaattttgactatGATGTTGAT
TATCAGCTTCAAGGGTGTTCacacttttttaaattattactGTAGTTCAG
AAGCTGGCTGGAGTAGAGCTCAACTACTTTCTTGCCTTTAATAATTTTGA
TGGGCTATTGCAgtgccatcattcaaatcagaaagtgAAGATTGTACAAG
GCAGATTTTTTGACTATTATTGCTTTATTACATTACATTTTCAGTTGTAC
CGCTTTCTTGCTCGAAGAACTAACTCAAAGTTCAATGAAGTTATCTTAAA
GAGATTGTTTATGAGCCGTATCAACAGACCACCACTCTCCATTGCTCGCA
TTGTAAGTATTGTGTCAAGGCCTGTTTTAATCGATTCCACGGCTGTGCAA
AGCTTGGTCAAATTTCCTGAAATAACACATTGGGTACAAGATGTTTTTAG
TTAACTCGTTGttcaattgaattgaattgaatatataaTTTCACTGACCC
TGGTGGAGGAAACTATGAATTTGTTATACAATAGACCATTGCGTTGTCTC
GAAAGGACTATTGACCAAATAAATTATCAAAGCTTTTTCAccaaggtttt
gtttttgactgATTAAGAATTTTCCATATCAAGTTTGGAGaatttcaagc
actttttttgaattttgaatccAGTCATTAAAATCTTAGATCAAAATTTT
ACTCTCTTTATAATAAGCAATCATTGATCCATAGGGCATACAAGGCCTCT
TGTGCCAAGTCTCAAGGCCTTCCATTCACATTGGCATTAGAGTGGTCACC
AAAATTGTGGAAACTCATTTCTAATCTGATAAAAGACCAGTGaccaaagt
gcttggaattttgcctgaaaatgctaaaaatacaAATACACCTTTCCCCT
AATTCGAAAAACAGATGCGCACActttattttgatgctctccactgTTTG
GACTCTGGAGGAAAACGAACCCGTTTTTGCTTGCatttccttagggaaag
tttttttttttgcttttctaAAGCTCTGTTGATCAAAATTCCCTCAAGAT
ATAGTATGTTATAGTATGTTCTTTCTATTCATGAACCctgaaaatttttt
gccaaCTAAAGATTggtatcaaaagttagaagctgaaaactcacttttag
tcccgctgctgagatcgaaaaaagtggctagaaaacgatTTTCGTGACAA
AAAGGTGTTTAATTTTGcataaattaatgcagattgtggggaaattccct
gttttccatcagtttttgaccacaaataggcccataacttttgatctaga
gaagttgggactttggtgtaatcaattttttggtcagtttgaagagctct
atcatgtgatataggtcttttttggacctaccccggtggggtggaggtcc
tataaattaacccatgttcgttcgttcgttagtgtgttagttaccagctt
ttctcgagattggttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTCTCGAGAttggttcattagtttt
ttctgatttttggcacaaaggtgcatgaccataaaccctcgaatgtgacg
gagcccgattttcgaaaaaaattttttttgggcaaatttgggccaaaaaa
cggcttaaaagcgggttttttggactttgtgaaaaattggatcattaatt
ttttctgatttttagcatgaaagtagggtacaatcatagttaaagcatgg
ctcaagcagatttttgcaaaaaaatttttttggctcaaaaatcgcatttt
tatctataagaaccacttttaataagaaaacatcaatgttcttagccata
ttattattattattattattatttttattagtttttttacgatgaaaatg
tcacggtggagggtaatgatttgagttttctgtaaacacttattattttt
tggctgaaaaacgaatctttatctataagaatcactatttacgagcatat
atcaatgttatcagccaaattgttttattattattttttttaacagaaga
aaatgtcacggtagagtgcgacggtttgagttttctggaaaccttattta
ttaagctgtgtatttttctgatagtggtttttataaagaaaagcgcttaa
tagcttttttatttctttttcaaaaatctttttNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNtattttttttgtattttgaccagttatgtcttatgtgtttcaat
gttcactgattagtttgataaccaggtaggtccataaaagtatcgcttgt
ttattttgaagaccccccaaaaatcaatgaatttccaggccttgcaattt
tgccttgaaacgcaaaaaatcgccaaatactcgttacttgcacgataata
ttgtagaaactttttgattttggaatattctaattcgcgagtttccacca
aaaaaagatgtgtgtcacgaaacGAAATATTTatcgacctcagcagcggg
actatttCCCTAACCTcttgcaggcaaaaacgcgtttgTTTACCtctcaa
acaattttatacatgacggtggagcgcacattttcctgGGCCATTTCTca
gaagtttgaattacgggaaaggtgtattcattGTGCCAGATTTTCAGACA
TTAAAGCAACCAACTATAATATTTTAATTGTTATCACGTTCGTTATAATA
GCCACTCACCCTTAGCAAACCTATTTTCTATGAGTCCTGGTTGAGTTATT
GTTTGAAGTTATTGCACATTTGAATGAATTCATAACATTGAAAGATGAAT
TATGAATCTATGTTATTCATCTACGTCTCTTTTTGTTGTACAGGCCAGAA
GAGTAAGCAAACCAGGATGTGAAGGAAAAATCATTGTCTGTGTTGGATCA
ATTACTGATGACCTAAGATTGACAACTGTACCCAAATTAAAGGTATTCAG
AGGTCTTGTTTTAGTATACAAAACACCTGATGTTTTCACTCAATTATAAG
TATTTCTGGTGCACtaataaattttacaaattttgattgtttttgtttta
ttatttcaaGGTTTGTGCTCTGAGATTCACTGAAGGAGCAAGAACAAGAA
TTACAAAAGCTGGTGGTGAATGCATCACCTTCGATCAATTGGCCCTCAAA
GCTCCAACTGGCAAAGGCACTCTTTTAATCCAAGGCCCAAGAAACTCTCG
TGAATCATGCAGGCATTTTGGACGTGCTCCAGGTGTTCCCCACAGCTCTA
CCAAGTATGTATGCGTTTTAAAACAGGCCATTTTCTCCAGCTCATTTCAA
GTTAAATTTGTCGTTTGTCGGAAAATAAAGAATCTCAGtatatttttttc
atgtttgaaaCTTAAATGAGGTCTCCTGCCCctaatatataatatattaa
TGAGCTCAGGTTCAGGATGGACTTTAAGTGAAAGTTGAAGGCATTTTTTA
AAGCTTCTCATGCTTATTGGAATAATTTAGTGAGATTCATTTTTTTTGTG
GTGATTGAATTTCGTGAAAATAGGTCCCAATAGAAAAGGTTTTTATccaa
gaaaatttttaattaaatttcaaaGAATAGTATGGTAGTAAAATAGCAAA
AGTAgaacaaaattgtgaaaatattatCACACAATAAGAGTCAACCAGAA
AATTTAATCCCATTAAATTAGATAATTTTCTAACTTGGACATCAAGAGTG
AATTCTCTAAACTTGAATGTTAGaacattgaaaagaaatttgtccaaaaa
agggcaaaaacgtaaaaattaaaacctgtgaaatctaattttaacaattt
tttttttcaaccgcAAATATTAGCTTCCGTAGAAATTAGGTCCAATAAGG
TACCCTTTACCTTGTAGGAAGNTTTTTTCAACTGCAAATATTAGCTTCCG
TAGAAATTAGATCCAATAAGGTACCCTTGTAGGAAAAGCTCACAGTACCC
ATGTTGCAGTTTTCATGGTTGGAATGATTGATTCTCTTATTGAAAGCAAT
CATTTCACTTCTGGATTCCAAAATCTTTCCCTACATTTTTGCTTTAATGC
TATTGCCTGATTGTGATGTatagtttgttttgttcttCATGATTTGATTT
GTGTCTCAAGAGCTCCAATTTTATGCTGTATGTACAAAATGATGAGAATT
TTCACGACGGTCTTCATAATTACGATGTTGATAAATGTGAAAACTGATTG
CATTGTAATTTTCTCTTCTGTGACAATTAAAATTTGATTGAGAGCTTAAG
TTTTCACTCAACATAAGAGTATCTATCTGGAGTCGCTTCCAAGATAGCTC
TGCTCGTGTGACAAGGAGCCTAGAACCTTTTCTCATTGAGGTATATTCCA
GTTACAGTGTTGGAGACTAATTCAGCTCATTGTTTTGCTTAATGCTGAAC
TTTTGATGCAGAGTTTGGCATATTCCATAAACTTTTTGTAGATACTATGT
ATCGATTATCATCAAGATAAACCATGCTAAAAACATCTTCAATATAAagt
ttttctcttattttcaaaattattttgtttacgttttcttGATTATTTCA
AGTGATTTCCATATTATGAGAATTTTCACGACGGTCTTCATAAAAACGAG
GTTGACAAATGTGAAAACTgatgaatttcttttgatatacaATTTCTATA
GTTGGggtctttatttttctttctgttcaCCAACATAGAGTATCTATCTG
GAGTCGCTTCCAAGATAGCTCTGCTCGTGTGACAAGGAGCCTAGAACCTT
TGTTCATTGAGGTATATTCCAGTCACAGTGTTGGATATAAATTCAGCTCA
TTGTTTTGTGTCATGCTTAACTTTTGATGCAGAATTTGGCATATTCCATA
AACTTTTTGTAGATACTATGTATCAATTACCATCAAGATAAACCATGCTA
AAAACATTTCATTATAAGGAGGTATTTTGTTTGACATTCTAATTTGGTTG
GCAGTTTTAGAGTGATCTTCCGATGATGAGAATTTTCACGACGGTCTTCA
TAAAAACGAGGTTGACAAATGTGAAAACTGATGGATTTCTTTTGATATAC
ATGTTCTATAGTTGGggtctttattttttttatacaccttaacttgttct
tagcatttttgccgttgaagccttatgttcttgtaaagtttgttcttata
aaaaagtgtaccGACATAGAGTATCTATCTGGAGTCGCTTCCAAGATAGC
TCTGCTCGTGTGACAAGGAGCCTAGAACCTTTCCTCATTGAGGTATATTC
CAGTCACAGTGTTGGATATAAATTCAGCTCATTGTTTTGCTTAATGCTTA
ACATTTGATGCAGAGTTTGGCATATTCCATAAACTTTTTGTAGATACTAT
GTATCAATTACCATTAAGATAAACCatgccaaaaacatttcttGAATAAA
TAATTACATGATTGTTTGATGTTCAGTCCAAATTCGTTACATTTTACCTC
TTTGCTTTCATTTGCATTCTTTGTCGTTGGGCTTCAGAAATGAGGAGAAC
TTCAACTGAAATTAATTTTATGTTGACTAATTATCTCGTTAAACTGATCT
GAAGTCTGTCAATTTTTGAATTATCCCAAAGTCTCTCAAAACTTAAAGTT
GAAACCATTTTTATGATAcaccttttaaaattttgagaagaTGNtgaagc
cttatgttcttgcaaagtttgtttttataaaaagtaccGACATAGAGTAT
CTATCTGGAGTCGCTTCCGAGATAGCTCTGCTCGTGTGACAAGGAGCCTA
GAACCTTTGTTCATTGAGGTATATTCCAGTCACAGTGTTGGATATAAACT
CAGctcatttttttgcttaatGCTCAACTTTTGATGTAGAGTTTGGCATA
TTCCATAAACTTTTTGTAGATACTATGTATCAATTACCATTAAGATAAAC
CatgccaaaaacatttcttGAATGAATAATTACATGATTGTTTGATGTTC
AGTCCAGATTCGTCATATTTTACCTCTTTGCTTTCATTTACATTCTTTGT
CGTTGGGCTTCAGAAATGAGGAGAACTTCAACTGAAACTAATTTTATGTT
GACTAATTATCTCGTTAAACTGATCTGAAGTCTGTCAATTTTTGAATTAT
CCCAAAGTTGAAACCATTTTTATGATAcaccttttaaaattttgagaaga
TGTTATAAAAAATATACGATGCTTGCTTTCAGCTTGTCTTGAAATGAGGA
GAATTTTAACTGAAAATTTATGAAGATTTTATATCTCGTTAAACTGATCA
AGAACAGCtgattattttatttatgttttatatgctttttcttttcttag
ctCTTTTACTTAGAAGAATTATTTTCGTGCTCTAAGTAATCCCGATAAAT
TGtttcccgaaaataatccgaaatcggaattaaaaAACTTAAGGTTCAGT
TCAAGTTAACCTTTGCATAATACAAAGCCGTTTTCTATTAATTTTATTAC
TTCGTTTCAATTCTTGTTCAAATTCCTTCTGAATCTAAACATGATCAATT
TATCTTTTCAGGCCATTTGTTCGAGCAAAGGGACGCAAATTCGAAAAGGC
CCGTGGTCGTCGTGCAAGTCGTGGTTACAAAGTGTAAAATTCTTGGctgt
aataaaaatgatggttaTCACAAtcaatgtttcttttctttccttATTAA
TATTCTTGCGATCTTTGACATCGAATTATGTCCATTTCTAGCTGAAATCT
GCTTTTCGGAGGTCCTCTAattaagggcagaaagtttgagaccgaaaagt
cgcgaaatttcgcggatttaagtttcgggtttttttcttttttaagaaaa
tt

Coding sequence (CDS) from alignment at scaffold_100:132065..140166+

>TCONS_00045645 ID=TCONS_00045645|Name=TCONS_00045645|organism=Clytia hemisphaerica|type=CDS|length=3402bp|location=Sequence derived from alignment at scaffold_100:132065..140166+ (Clytia hemisphaerica)
ATGGGTATTGACTTGGACCATCGCAAAGACAAGAAGAAAAGCCGAAAGGC
TCCAGTCTCCCAGGACCCCTACATTCGCCTTTTGGTGAAATTGTACCGCT
TTCTTGCTCGAAGAACTAACTCAAAGTTCAATGAAGTTATCTTAAAGAGA
TTGTTTATGAGCCGTATCAACAGACCACCACTCTCCATTGCTCGCATTGC
CAGAAGAGTAAGCAAACCAGGATGTGAAGGAAAAATCATTGTCTGTGTTG
GATCAATTACTGATGACCTAAGATTGACAACTGTACCCAAATTAAAGGTT
TGTGCTCTGAGATTCACTGAAGGAGCAAGAACAAGAATTACAAAAGCTGG
TGGTGAATGCATCACCTTCGATCAATTGGCCCTCAAAGCTCCAACTGGCA
AAGGCACTCTTTTAATCCAAGGCCCAAGAAACTCTCGTGAATCATGCAGG
CATTTTGGACGTGCTCCAGGTGTTCCCCACAGCTCTACCAAGCCATTTGT
TCGAGCAAAGGGACGCAAATTCGAAAAGGCCCGTGGTCGTCGTGCAAGTC
GTGGTTACAAAGTGTAAATGGGTATTGACTTGGACCATCGCAAAGACAAG
AAGAAAAGCCGAAAGGCTCCAGTCTCCCAGGACCCCTACATTCGCCTTTT
GGTGAAATTGTACCGCTTTCTTGCTCGAAGAACTAACTCAAAGTTCAATG
AAGTTATCTTAAAGAGATTGTTTATGAGCCGTATCAACAGACCACCACTC
TCCATTGCTCGCATTGCCAGAAGAGTAAGCAAACCAGGATGTGAAGGAAA
AATCATTGTCTGTGTTGGATCAATTACTGATGACCTAAGATTGACAACTG
TACCCAAATTAAAGGTTTGTGCTCTGAGATTCACTGAAGGAGCAAGAACA
AGAATTACAAAAGCTGGTGGTGAATGCATCACCTTCGATCAATTGGCCCT
CAAAGCTCCAACTGGCAAAGGCACTCTTTTAATCCAAGGCCCAAGAAACT
CTCGTGAATCATGCAGGCATTTTGGACGTGCTCCAGGTGTTCCCCACAGC
TCTACCAAGCCATTTGTTCGAGCAAAGGGACGCAAATTCGAAAAGGCCCG
TGGTCGTCGTGCAAGTCGTGGTTACAAAGTGTAAATGGGTATTGACTTGG
ACCATCGCAAAGACAAGAAGAAAAGCCGAAAGGCTCCAGTCTCCCAGGAC
CCCTACATTCGCCTTTTGGTGAAATTGTACCGCTTTCTTGCTCGAAGAAC
TAACTCAAAGTTCAATGAAGTTATCTTAAAGAGATTGTTTATGAGCCGTA
TCAACAGACCACCACTCTCCATTGCTCGCATTGCCAGAAGAGTAAGCAAA
CCAGGATGTGAAGGAAAAATCATTGTCTGTGTTGGATCAATTACTGATGA
CCTAAGATTGACAACTGTACCCAAATTAAAGGTTTGTGCTCTGAGATTCA
CTGAAGGAGCAAGAACAAGAATTACAAAAGCTGGTGGTGAATGCATCACC
TTCGATCAATTGGCCCTCAAAGCTCCAACTGGCAAAGGCACTCTTTTAAT
CCAAGGCCCAAGAAACTCTCGTGAATCATGCAGGCATTTTGGACGTGCTC
CAGGTGTTCCCCACAGCTCTACCAAGCCATTTGTTCGAGCAAAGGGACGC
AAATTCGAAAAGGCCCGTGGTCGTCGTGCAAGTCGTGGTTACAAAGTGTA
AATGGGTATTGACTTGGACCATCGCAAAGACAAGAAGAAAAGCCGAAAGG
CTCCAGTCTCCCAGGACCCCTACATTCGCCTTTTGGTGAAATTGTACCGC
TTTCTTGCTCGAAGAACTAACTCAAAGTTCAATGAAGTTATCTTAAAGAG
ATTGTTTATGAGCCGTATCAACAGACCACCACTCTCCATTGCTCGCATTG
CCAGAAGAGTAAGCAAACCAGGATGTGAAGGAAAAATCATTGTCTGTGTT
GGATCAATTACTGATGACCTAAGATTGACAACTGTACCCAAATTAAAGGT
TTGTGCTCTGAGATTCACTGAAGGAGCAAGAACAAGAATTACAAAAGCTG
GTGGTGAATGCATCACCTTCGATCAATTGGCCCTCAAAGCTCCAACTGGC
AAAGGCACTCTTTTAATCCAAGGCCCAAGAAACTCTCGTGAATCATGCAG
GCATTTTGGACGTGCTCCAGGTGTTCCCCACAGCTCTACCAAGCCATTTG
TTCGAGCAAAGGGACGCAAATTCGAAAAGGCCCGTGGTCGTCGTGCAAGT
CGTGGTTACAAAGTGTAAATGGGTATTGACTTGGACCATCGCAAAGACAA
GAAGAAAAGCCGAAAGGCTCCAGTCTCCCAGGACCCCTACATTCGCCTTT
TGGTGAAATTGTACCGCTTTCTTGCTCGAAGAACTAACTCAAAGTTCAAT
GAAGTTATCTTAAAGAGATTGTTTATGAGCCGTATCAACAGACCACCACT
CTCCATTGCTCGCATTGCCAGAAGAGTAAGCAAACCAGGATGTGAAGGAA
AAATCATTGTCTGTGTTGGATCAATTACTGATGACCTAAGATTGACAACT
GTACCCAAATTAAAGGTTTGTGCTCTGAGATTCACTGAAGGAGCAAGAAC
AAGAATTACAAAAGCTGGTGGTGAATGCATCACCTTCGATCAATTGGCCC
TCAAAGCTCCAACTGGCAAAGGCACTCTTTTAATCCAAGGCCCAAGAAAC
TCTCGTGAATCATGCAGGCATTTTGGACGTGCTCCAGGTGTTCCCCACAG
CTCTACCAAGCCATTTGTTCGAGCAAAGGGACGCAAATTCGAAAAGGCCC
GTGGTCGTCGTGCAAGTCGTGGTTACAAAGTGTAAATGGGTATTGACTTG
GACCATCGCAAAGACAAGAAGAAAAGCCGAAAGGCTCCAGTCTCCCAGGA
CCCCTACATTCGCCTTTTGGTGAAATTGTACCGCTTTCTTGCTCGAAGAA
CTAACTCAAAGTTCAATGAAGTTATCTTAAAGAGATTGTTTATGAGCCGT
ATCAACAGACCACCACTCTCCATTGCTCGCATTGCCAGAAGAGTAAGCAA
ACCAGGATGTGAAGGAAAAATCATTGTCTGTGTTGGATCAATTACTGATG
ACCTAAGATTGACAACTGTACCCAAATTAAAGGTTTGTGCTCTGAGATTC
ACTGAAGGAGCAAGAACAAGAATTACAAAAGCTGGTGGTGAATGCATCAC
CTTCGATCAATTGGCCCTCAAAGCTCCAACTGGCAAAGGCACTCTTTTAA
TCCAAGGCCCAAGAAACTCTCGTGAATCATGCAGGCATTTTGGACGTGCT
CCAGGTGTTCCCCACAGCTCTACCAAGCCATTTGTTCGAGCAAAGGGACG
CAAATTCGAAAAGGCCCGTGGTCGTCGTGCAAGTCGTGGTTACAAAGTGT
AA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029187	XLOC_029187	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00045645-protein	TCONS_00045645-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_100	supercontig	scaffold_100:132065..140166 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1898.66	1890.2	1913.39	1937.8	1739.71	1420.63	2049.96	2108.82	3169.15	2917.33	3290.75	3863.83	4497.61	4727.53	4093.24	3863.56	4404.24	4455.1	2379.53	2561.71	3923.55	4089.59	3118	2964.59	2676.93	3033.76	3840.75	4014.69	2532.83	2628.57

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR021131	Ribosomal_L18e/L15P
IPR021132	Ribosomal_L18e_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Blast

[Close]

BLAST of TCONS_00045645 vs. Swiss-Prot (Human)
Match: RL18 (60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 2.973e-80
Identity = 128/187 (68.45%), Postives = 153/187 (81.82%), Query Frame = 3

Query:  129 MGIDLDHRKDKKKSRKAPVSQDPYIRLLVKLYRFLARRTNSKFNEVILKRLFMSRINRPPLSIARIARRVSKPGCEGKIIVCVGSITDDLRLTTVPKLKVCALRFTEGARTRITKAGGECITFDQLALKAPTGKGTLLIQGPRNSRESCRHFGRAPGVPHSSTKPFVRAKGRKFEKARGRRASRGYK 689
            MG+D+ H KD+K  RK P SQD Y+RLLVKLYRFLARRTNS FN+V+LKRLFMSR NRPPLS++R+ R++  PG E K  V VG+ITDD+R+  VPKLKVCALR T  AR+RI +AGG+ +TFDQLAL +P G GT+L+ GPR  RE  RHFG+APG PHS TKP+VR+KGRKFE+ARGRRASRGYK
Sbjct:    1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187

The following BLAST results are available for this feature:

BLAST of TCONS_00045645 vs. Swiss-Prot (Human)

BLAST of TCONS_00045645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RL18	2.973e-80	68.45	60S ribosomal protein L18 OS=Homo sapiens GN=RPL18...	[more]

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TCONS_00045645 (transcript) - C. hemisphaerica