TCONS_00045706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045706
Unique NameTCONS_00045706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045706 ID=TCONS_00045706|Name=TCONS_00045706|organism=Clytia hemisphaerica|type=transcript|length=691bp
TTCGGATATGGCAGTGACCTTGAACTACGTCAAGATTACCTAGAACCTaa
TTTTGTGATTCCAAGCAATTGTACGACGGAATTATCATCAGCAGGATTGG
ATTTCGTGATGGAATTGTTTTATAAATATGATCGAGACGAAGATGATGCT
TTGTCTTCCGACGAACTCAAGGACATGTTATGGTTGTGTCCTGATGAGGC
TGTCAACGATTTTACTTCCACTTACACCAATGATGAAGGATGGTGCACTG
CTGAAGGCTTTGTTGCTTATTGGATaTTGCAGACGTATCTCGACTACAAA
TGGGCGTGTAGGATGCTGGCCAACTTTGGTTTTATTCATGGTGACCTTGA
CAATCAATTAACTGGATTGAGAGttaCACGTGCTAAAGATATCGATATGC
AGAAACGTAAAACGACCAGGAGTGTCTTTCTAGTTTACGTTGTCGGTAAA
CGTAACTGCGGGAAGACGGCGTTCTTACAAAGCTTCGTAGATCGTTACGT
TGGAAGCTACCAAAAAGACCAGCCCTTATCCAAACACGTCATTAATGCGG
TGCAGTTACGGAAACAAGAAGTTTATCTTATCGTGAGTGGGCCAGTCTTT
TTATTTTACGACTTGTTTTGATGTACGGGCTTTCTATTTGCAACTTACGT
TGACGTTTTATGCAGTAGTgtggtgggtcgactaaaattcg
Run BLAST on NCBI

transcript from alignment at scaffold_100:811925..815031+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045706 ID=TCONS_00045706|Name=TCONS_00045706|organism=Clytia hemisphaerica|type=transcript|length=3107bp|location=Sequence derived from alignment at scaffold_100:811925..815031+ (Clytia hemisphaerica)
TTCGGATATGGCAGTGACCTTGAACTACGTCAAGATTACCTAGAACCTaa
gtaatttatttttgaactcgatacagtggagtctctataactctcATCAT
TCTTTTTCGTTCTCTGGTCCCTTCAAGTAACAATGTCTACAAACCATTTC
TATAACTCGAGATTTCCTTAACTCGtaaaatttgtgttccccgtgcatGT
TCGAGTTACAGAGGCTCTATatgtattttgattttgttcagTCTGTTCTC
GAAGCTCACACGGTACAGAAATCAGAGTTTGACGGGTAGTAGGAGAGTTC
TTTTTAGTAAAGGGTTTTGCGAGCTTAATTTATGGAACTTAATCTTAGGt
gaaatgatttttataaaaactaccTTGTAGTTTGTGGCAAATAAAAGCAA
CAAGAACCGTTATAAACCTATTTTACGAAACCCTCGTCAGCACATGTTTA
TTAAGAAATGTCTACGGAGAAATCTCTTATGAGtttatgaatgaatgaat
gaatgaatgaaaatttattttttcagtaattttcTAAGTTTTCtaagtaa
tttttttaagtaACTACACAATGGAATTTATCATCGGCTGGGTCTAAATG
AATGAATTAATGCATTAttcaatgaatgaatgaaaatttcgcTTTCTTTC
TTAGTTTTGTGATTCCAAGCAATTGTACGACGGAATTATCATCAGCAGGA
TTGGATTTCGTGATGGAATTGTTTTATAAATATGATCGAGACGAAGATGA
TGCTTTGTCTTCCGACGAACTCAAGGTATCCAAATCACTGacttttatat
atccctggaccaagctatatccgccatctttgatcgaatttttttttgaa
ttggtacccgtaaaggaGCCATTGTAGCAGATTGTAGTGTTAAAATCTTG
TTTAActacaaacggcgctacatcccACAAATGTACAAGCGAAGtggatc
tagcgctctcgatgcgggtaccactttcaaaaaaacttcgatcaaaatgt
tttgcttggccgggattgagaaacttggtcaaGGATATTTAAAGGTCAGT
GATCTAAATACTTTATCTATTCTTTAATTTTGGGCTGTTCTATTaaaaat
ccatacaggggggggggtggaaaagaatcaaaaaagtcaaaaaagaatac
tttaaaatgtgtggataccacctgaaaaatggcaaaattttcaaaaagac
cCTTGGAAAGATTCTTTTCCTGCCTTTTAAGTGaaggtggacgaactaaa
atcagtctggAACCCCCTGGAATAATGAGAAATTCTCCTTTAGACCCCTT
GAGATAACTCAACCGCATTGttggcctcgttttcaaatgaaattattACT
TCAAACGACATTTACACATGTAATATGTTTTCCTAAAAATCCGTCCGTTT
TCAATTTTAATACAAAGCCGGAAACACTTGCAAACATTGATTATGTCTAA
CGACGTTGAAGTATCGTAGCAACCAGTATTTGAGAACGACCTTTGCaatt
attttatgaattttaagaaGAATGTACCGAAATTTATTCAACTGTCTTCT
TTAATCATTTATAGGACATGTTATGGTTGTGTCCTGATGAGGCTGTCAAC
GATTTTACTTCCACTTACACCAATGATGAAGGATGGTGCACTGCTGAAGG
CTTTGTTGCTTATTGGATGTAAGCAGCACTGATCTGTAAACTATTTGACT
GGAGCGGGCTACCCATTTAGTATAGGGAGTGTGTCCAGGTTTAGAACTGA
CTTGTCcaccatcttgttttcaattctcgTCGTCAACAgcgcgattcgaa
tgttttgaaatttgaacgttcgaaaatctaaggtgaaataaaaaacaata
tgGTGGCCTAGCCGACTTCAAAACTGGCCACACTTACATGGGAAATCTGT
TTGGAGTTGGCCTATCTAGTATGTAAAAGGATATGATGTCTGTGGATAAA
AGTGTTGTCTGATGACGTCACCAGTGTTAAAAGGACATAAAGTGGTTacg
aaatttgaaaaacaactgtatggagaaaaaaaagagtcaaaaaaccaaaa
aatcaaaacatattgTTTGCTTTGACACGTGATTATGATTGTTTCGTATT
ATAACACGTGgctcgcgcaatgtttacattttgctCCCATCCCTTCAAAT
ACTAAGTTTAGGGAGCGGTGTTTATGCAGCGGTTGTATGAAGGAAGTAAG
CATTTTCGGTCTTGTCAATTTAGGTATTGTAGTTGTTATTAGGCGTTGAA
AGCTTTATAAGGTAAGTGCTATTTTGTTTCTCACaatattgacaaacttt
ttgtatttagaTTGCAGACGTATCTCGACTACAAATGGGCGTGTAGGATG
CTGGCCAACTTTGGTTTTATTCATGGTGACCTTGACAATCAATTAACTGG
ATTGAGAGGTAATTTTGAAGAACATGTACAATTGAAAACGATGTCGATTA
ATGCAAAAGTTCGACTAGCAATCTGGAATCAATCAAACCAGTTTCAGGAT
TATTGGACTGGTGTATTTTTGATAGAATCCTTGATATGACTAACTTCCTT
TTAACGATAACACCCTCGATCTTTTCTTTCTGGCGTCATTTGACGGGATA
CAGGCGATAAATACAGGGTTTTTATACGGGTCTTACGGGTAGGAAAagat
gacgtaatcttgataATTAAGATGGAAATAATTTACTGGtccattctttc
ttttttagttaCACGTGCTAAAGATATCGATATGCAGAAACGTAAAACGA
CCNTGGAAATAATTTCCTGGtccattctttcttttttagttaCACGTGCT
AAAGATATCGATATGCAGAAACGTAAAACGACCAGGAGTGTCTTTCTAGT
TTACGTTGTCGGTAAACGTAACTGCGGGAAGACGGCGTTCTTACAAAGCT
TCGTAGATCGTTACGTTGGAAGCTACCAAAAAGACCAGCCCTTATCCAAA
CACGTCATTAATGCGGTGCAGTTACGGAAACAAGAAGTTTATCTTATCGT
GAGTGGGCCAGTCTTTTTATTTTACGACTTGTTTTGATGTACGGGCTTTC
TATTTGCAACTTACGTTGACGTTTTATGCAGTAGTgtggtgggtcgacta
aaattcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029210XLOC_029210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045706-exon-scaffold_100-1491911889:811925..811974TCONS_00045706-exon-scaffold_100-1491911889:811925..811974Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1510915933:811925..811974TCONS_00045706-exon-scaffold_100-1510915933:811925..811974Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1575043694:811925..811974TCONS_00045706-exon-scaffold_100-1575043694:811925..811974Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1491911889:812579..812699TCONS_00045706-exon-scaffold_100-1491911889:812579..812699Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1510915933:812579..812699TCONS_00045706-exon-scaffold_100-1510915933:812579..812699Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1575043694:812579..812699TCONS_00045706-exon-scaffold_100-1575043694:812579..812699Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1491911889:813489..813592TCONS_00045706-exon-scaffold_100-1491911889:813489..813592Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1510915933:813489..813592TCONS_00045706-exon-scaffold_100-1510915933:813489..813592Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1575043694:813489..813592TCONS_00045706-exon-scaffold_100-1575043694:813489..813592Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1491911889:814235..814332TCONS_00045706-exon-scaffold_100-1491911889:814235..814332Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1510915933:814235..814332TCONS_00045706-exon-scaffold_100-1510915933:814235..814332Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1575043694:814235..814332TCONS_00045706-exon-scaffold_100-1575043694:814235..814332Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1491911889:814714..815031TCONS_00045706-exon-scaffold_100-1491911889:814714..815031Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1510915933:814714..815031TCONS_00045706-exon-scaffold_100-1510915933:814714..815031Clytia hemisphaericaexon
TCONS_00045706-exon-scaffold_100-1575043694:814714..815031TCONS_00045706-exon-scaffold_100-1575043694:814714..815031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:811925..815031 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.60076	0.335801	0.00035798	1.1305	3.70176	4.18675	0.000113394	3.63983	0.0080816	0.635792	0	0.0180611	1.21754e-05	0.0310546	1.63894e-08	0.00750654	0.0104768	0.00126669	10.3691	0	0.0685221	7.94257	2.82117	3.83771	0.00415387	1.03404	0.52114	1.36051	10.3394	1.971
Blast
[Close]
BLAST of TCONS_00045706 vs. Swiss-Prot (Human)
Match: MIRO1 (Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT1 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 8.550e-36
Identity = 80/202 (39.60%), Postives = 117/202 (57.92%), Query Frame = 1 
Query:    1 FGYGSDLELRQDYLEPNFVIPSNCTTELSSAGLDFVMELFYKYDRDEDDALSSDELKDMLWLCP----DEAVNDFTSTYTNDEGWCTAEGFVAYWILQTYLDYKWACRMLANFGF-IHGDLDNQLTGLRVTRAKDIDMQKRKTTRSVFLVYVVGKRNCGKTAFLQSFVDRYVGSYQK--DQPLSKHVINAVQLRKQEVYLIV 585
            FGY  DL+L  +YL P   IP +CTTEL+     F+   F K+D D D ALS DELKD+  + P       VN+  +  TN+ GW T +GF++ W L TYLD +     L   G+ I  + ++Q + + VTR K ID+QK++T R+VF   V+G +NCGK+  LQ+ + R +   +K  +   S + IN V +  QE YL++
Sbjct:  274 FGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWGPDVNN--TVCTNERGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLL 473
The following BLAST results are available for this feature:
BLAST of TCONS_00045706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIRO18.550e-3639.60Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT... [more]
back to top