TCONS_00045713 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045713
Unique NameTCONS_00045713
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045713 ID=TCONS_00045713|Name=TCONS_00045713|organism=Clytia hemisphaerica|type=transcript|length=1498bp
caaaaaattttcgtgATGGTGTGTGACAAACATGCTTTTAATAATAGCAT
ACAGTGGAaactagctgggagacccggcTACAATGTCCGTGTGGTTTTGA
GATCGATGTTTTGATGGGTTGATCACACAAACATTTCCTTTCCTTCGAAA
ATTTCCACAAATCACTTCTCTCCACCAACTCGAAAAGgtCTATCGTTCGT
TGTTGCTTTCCAAAGTCCGAAATCCGTTTCACGTCCCTCGCCGTTAGTGG
TGCTCGCATTTTGTACACGACCTCCTTCTCGTTTCTCGTACACGACGTTA
TTCGTTCCTCGTACACGATATTATTCGTTTTTCGTACACGACGTTATTCG
TTTTTCGTGGACAACATGCTTCCTTGTCGTTTGTGACGATACTTAATTCG
CAGACACTGTCGTTATTTGTCTTCGTTGCTCGTTACCCTTGGAGTCTTTT
TCAACAGTAGCAGTTTAACTTGCTTGTCCATTGATTGGAGTAAAGACCAG
TTTGGAGTTTCATTTAGTGTAATGGTTTTCAGATTCAGTTGTCATTCGTG
GTTATCACAGTATCATGTTTTCACATACAATGCATTTTGAAACAGTGGAC
TTTCTTCACAGTGATCCTGGCAAAAAGTAAACCGTTTACTGGAATCACGC
GATGCGTGTCGTTTATTCCGGCTAAGTAGAACTTTCAATAGATACCTTAA
CCaaggaaactaattttggcgagaaataaattttgagaattttgctAGTT
TTGCCTAATGTGTTTCCAGATATAATTGACAGttgaaacaagaatgcctg
taacttttgatataatttcgaaactttttctgtttgttttagagaatcaa
aagtgctatatttgaatgtatttttggttgaaaaattcgtgatttttagc
ggttaaatttgtgattgaaaaaattgagctttttatcTACTTaagctata
acgttcatttttacaccagtggtagttcaaccttaggttaagaaggttgt
caaatttAAAGGCAAATGGAAAAGTCCTTAGGAAGAtaatgggacccgaa
ataccccttgctaGCACTTTTTTTCTGTGAAAcatcaaatctccaaattt
ttaattttacttctcgccaaaatttctcaTTGATTCAGAACTTAATTTGT
TGGGCATTTCggaattgaaaaagatttaaaaagtcagcatttattttgga
ttttgatgaaCCTGCAATCAGCTGGACAAGGACCTGAAATAATTCTGGCA
TCAAGTGATTTAcgaaaattttatatttattttcacgaagaaaaaacaag
agttcataaaaacgaaaaaatacatttttttatttttagaaaaaatttga
atattattattaCAGAATATAAATTTTACATGTATAAATAGAGTAACTTT
GTATTTATTGCAGTTTCAACCTAAGAAATATTCAAGAAGTCCGATTGAAC
TTTTAGCGATCCATGCTAACTTTGGGAACGAATTTGTCTGGGTATGTG
Run BLAST on NCBI

transcript from alignment at scaffold_100:31396..34262-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045713 ID=TCONS_00045713|Name=TCONS_00045713|organism=Clytia hemisphaerica|type=transcript|length=2867bp|location=Sequence derived from alignment at scaffold_100:31396..34262- (Clytia hemisphaerica)
CAAAAAATTTTCGTGATGGTGTGTGACAAACATGCTTTTAATAATAGCAT
ACAGTGGAAACTAGCTGGGAGACCCGGCTACAATGTCCGTGTGGTTTTGA
GGTATAGCATTTAGTTCGAGCAGAAAATATCAGAGTTTTGACATAGTACT
CACTGATTAGCTATGGGATGGATTTTGAAGTATAATTTTTGATTTGAGAG
TATGGTCTCCAGACTAAGTGGAAACCGACTTTTATAACATACAGTAGAAA
CATACAGTCATTACAATAGAGAAAAGTATAAAACAATAAGATGAAAAAAT
ATTTACGACTTCATGAAAAATGATCAATTTAGTACAATGTACGAAACTAT
TGTAGTGTTTTTTTAACAGACTGGTTGTTCTATTAGATAACCATGCATTG
GGTTTTTTTTACAGATCGATGTTTTGATGGGTTGATCACACAAACATTTC
CTTTCCTTCGAAAATTTCCACAAATCACTTCTCTCCACCAACTCGAAAAG
GTAAAAGAATTTGATTACTTTTTTCAAGGCACTTCCTCTAAAATCTCAGA
CATCGGGCTGGTTAGTGACGTGGTGGTATACCCTTAAAACTTTTAAATCC
TGGTGAATAAGGGGGGGGGGGGGCGGTATTAGAATCTCAGATTGTACTAA
AATGATTTTGGAGAATTCTTTGCATAACCCCACTATTGAAAAGTACTTTT
TTAGTACTCTTAGGTTCCAAATAAACGGGCCCCCCCGCTTGTTAATTTTT
CGAAAATTTTCCAACCCCCCCGGACCTTATTAGGACACCTCCGTTTATTA
ATCTCTAAGAATATTTTCAGATCTCAAAGAGAAGGCCCCTTATTTTGCTC
TAAATAGCCTGATTTTAAGCTATTTTTACCGTATTTTTGGGTTTCAGAAG
TACAATTTCCAACCCCCCCGGCAATTAGGTCCCCCCCGTTTATTAAAATC
TAGAAAATTTTCCAACCCCCCCGTTTATTCGAACCCCCCCGTTTATTTGG
AACCTAAGAGTACCAATGTACTAAAATTTTTATGATGAGTTTGTTTCAAT
CTTATTCAGTTCTTAATAAATCTATGATAAATCACGTGGTTGGATTTTTA
AATCAAAATGTAGATACTCTAACTATGTATGATTTGGCAATGTTCTTCCG
TTGATTTGATATTAGTGAACATTTCGAAGTACACTTTTTTATAAGAACAA
TTTTATAACAACAACGAGGCTCAAAATTCCCAAAAGATAAGAACATTTTA
AGAAAAATGGCGAGCCCGAATCTACTCAATTTCAAGTAATTTAGGGGACA
AAGTAGTAAAATTGGGTATAACATTTATAATTTATAATAATTTCTCAATT
ACATCCAATAATAAATAAAAATAGTATAAGAACAATTTGAGGCTCAAAAT
AACAAAAAAAATAAGAACAGCCTAGCCTCAGCAAAATTAACTGGTTCTTA
TGAAAAAAGTGTGAATGGTTCGATTTCGAATCAGGTGTGCTTGATAACAA
TATTATTTGGTGAAAACAAAGTCTGAAATTTCCTTATCTTATGTTTTTGT
TTTCAGGTCTATCGTTCGTTGTTGCTTTCCAAAGTCCGAAATCCGTTTCA
CGTCCCTCGCCGTTAGTGGTGCTCGCATTTTGTACACGACCTCCTTCTCG
TTTCTCGTACACGACGTTATTCGTTCCTCGTACACGATATTATTCGTTTT
TCGTACACGACGTTATTCGTTTTTCGTGGACAACATGCTTCCTTGTCGTT
TGTGACGATACTTAATTCGCAGACACTGTCGTTATTTGTCTTCGTTGCTC
GTTACCCTTGGAGTCTTTTTCAACAGTAGCAGTTTAACTTGCTTGTCCAT
TGATTGGAGTAAAGACCAGTTTGGAGTTTCATTTAGTGTAATGGTTTTCA
GATTCAGTTGTCATTCGTGGTTATCACAGTATCATGTTTTCACATACAAT
GCATTTTGAAACAGTGGACTTTCTTCACAGTGATCCTGGCAAAAAGTAAA
CCGTTTACTGGAATCACGCGATGCGTGTCGTTTATTCCGGCTAAGTAGAA
CTTTCAATAGATACCTTAACCAAGGAAACTAATTTTGGCGAGAAATAAAT
TTTGAGAATTTTGCTAGTTTTGCCTAATGTGTTTCCAGATATAATTGACA
GTTGAAACAAGAATGCCTGTAACTTTTGATATAATTTCGAAACTTTTTCT
GTTTGTTTTAGAGAATCAAAAGTGCTATATTTGAATGTATTTTTGGTTGA
AAAATTCGTGATTTTTAGCGGTTAAATTTGTGATTGAAAAAATTGAGCTT
TTTATCTACTTAAGCTATAACGTTCATTTTTACACCAGTGGTAGTTCAAC
CTTAGGTTAAGAAGGTTGTCAAATTTAAAGGCAAATGGAAAAGTCCTTAG
GAAGATAATGGGACCCGAAATACCCCTTGCTAGCACTTTTTTTCTGTGAA
ACATCAAATCTCCAAATTTTTAATTTTACTTCTCGCCAAAATTTCTCATT
GATTCAGAACTTAATTTGTTGGGCATTTCGGAATTGAAAAAGATTTAAAA
AGTCAGCATTTATTTTGGATTTTGATGAACCTGCAATCAGCTGGACAAGG
ACCTGAAATAATTCTGGCATCAAGTGATTTACGAAAATTTTATATTTATT
TTCACGAAGAAAAAACAAGAGTTCATAAAAACGAAAAAATACATTTTTTT
ATTTTTAGAAAAAATTTGAATATTATTATTACAGAATATAAATTTTACAT
GTATAAATAGAGTAACTTTGTATTTATTGCAGTTTCAACCTAAGAAATAT
TCAAGAAGTCCGATTGAACTTTTAGCGATCCATGCTAACTTTGGGAACGA
ATTTGTCTGGGTATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029217XLOC_029217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045713-exon-scaffold_100-1575043694:34162..34262TCONS_00045713-exon-scaffold_100-1575043694:34162..34262Clytia hemisphaericaexon
TCONS_00045713-exon-scaffold_100-1575043694:33763..33848TCONS_00045713-exon-scaffold_100-1575043694:33763..33848Clytia hemisphaericaexon
TCONS_00045713-exon-scaffold_100-1575043694:31396..32706TCONS_00045713-exon-scaffold_100-1575043694:31396..32706Clytia hemisphaericaexon
TCONS_00045713-exon-scaffold_100-1510915933:34162..34262TCONS_00045713-exon-scaffold_100-1510915933:34162..34262Clytia hemisphaericaexon
TCONS_00045713-exon-scaffold_100-1510915933:33763..33848TCONS_00045713-exon-scaffold_100-1510915933:33763..33848Clytia hemisphaericaexon
TCONS_00045713-exon-scaffold_100-1510915933:31396..32706TCONS_00045713-exon-scaffold_100-1510915933:31396..32706Clytia hemisphaericaexon
TCONS_00045713-exon-scaffold_100-1491911889:34162..34262TCONS_00045713-exon-scaffold_100-1491911889:34162..34262Clytia hemisphaericaexon
TCONS_00045713-exon-scaffold_100-1491911889:33763..33848TCONS_00045713-exon-scaffold_100-1491911889:33763..33848Clytia hemisphaericaexon
TCONS_00045713-exon-scaffold_100-1491911889:31396..32706TCONS_00045713-exon-scaffold_100-1491911889:31396..32706Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:31396..34262 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.566128	0.246105	0.1128	0.31931	0.455101	0.296742	0.480415	0.460965	0.198831	0.000878196	0	0.232305	1.54711	0.599284	0	0	0	0	4.86394	2.00312	0	0.177932	0.307099	0	0	1.13581	0.00238821	0.6658	0.0639954	0.064129
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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