TCONS_00045757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045757
Unique NameTCONS_00045757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045757 ID=TCONS_00045757|Name=TCONS_00045757|organism=Clytia hemisphaerica|type=transcript|length=1725bp
TTTTCGTCGTATTGGTAGTTGCAAGTAATAGTCTTTCTTTGTGACCTTTC
TTAATTTCACCCATTATCATAAATTTATTTCCAGACTACCCAAAACAATA
TAAAAACTACAAATATATGAAGTATAAAGATGGATGACATCATTGCTAAT
GTGGACAATATGCGCTTTGATATAGAAGTTGCATTGGAAATGCAGCTGGG
GATTCAACCTCTTCCTTTCCCTGGAATGGACAaatctgCGTCCgcaattt
gtgattttttcatCTCAAACAGATGTACGAGAGGGCAGCTCTGTCCACTG
AGGCATGTCAGGGGAAACCAGGCTATTGTATGTAAACATTGGCTTCGTGG
GCTGTGTAAGAAAGGAGACGACTGTGAATTTCTTCATAAATATGATATGG
AAAAAATGCCTGAGTGCTATTTCTATATCAAATACGGGCAGTGCAGCAAC
AAAGAATGCCCATTTCTCCATTTGAATCCAGAAGATAAAATCAAAGACTG
TCCCTGGTACGATCGAGGCTTTTGTAAACATGgtCCGAATTGTAAGAACC
GACATGTCCGAAGAGTTATGTGTGTCAACTACCTCTGTGGATTTTGTCCG
GAGGGCAAAGAATGCAAATTTTCTCATCCACGCTTCGAGGTACAGATCGT
AGAAGAACGTAAACCTTTCGCTCACATCGTTTGTCATGCATGCGGTGAGC
AAGGTCACAAGTCGACGCATTGTGCAGTTGCTAGGCGACTCAATGCTGAA
GCTGCTATGAGGGGTGAGACTGTTCCCGACGCCCAAAGCACCACTCAACA
AACAGAAGAAACAACCAACCCCACTGAGAACAAAGCGCCTCCTCAACGCG
CCCATCGACCGCCAGCTGGTATGCCGCGGGAACGAATAGAACCGCCCGCT
CCAACGATTGTTCAGGGTGATCCGAACGCTGTTGGTGGAGGCGGAGGGGC
GGCTTTCGTACCTTTTGGAAAACGACCTCTCGAATTTGTCACGTGTTACA
AGtgCCGTGGAAAAGGTCATTACGCAAATCGGTGTCCATTTTCGACCAAT
CAACACCGTCCACCAGCCGGCATTCCAATGTCAATGCAACGATATCCAAT
gcaacatcatcatcatcaaccgCATTTCATTCAACCTAATACACAACCAG
TggtccaacaacaacaacaacaacaggtACCTCAGGTATCTCAGGTACCT
CAACCTCAACAGCAACCTGTATCTTGATGATTCGTCGTTGTTATTTGTCG
GCTTTTTCTTGTCGGTGACGTTATCGGTTTTGGGGGGCTTTTTTCGACAA
ACGACAGAAGCTTTTGTTACTAAATACTTTAGGGTGCTTTGAAAAATTCT
CAGGATCATGTTGATTTTTTGGCAATATAGTGTGTCAAATGTATAATTTT
CATACTTGCCAATCCTAATGATGCATTGGGGTgacaaaataataattttt
ttcaatcccCCTGATAAATCACAACGTCATAGATatctcaaacaaaaact
ttatccAGTTTCAAGgttgtttttgtaaaatttttcatttttgttttgta
tatatttattATGACCCAATATATTGTTTATATACCTCTCAGCCATAAAA
AATGTcatatatttttctttagcCATCTTCCGCCCCcagatttttttttg
agaatcggactccgtcacattcgagggtatAGCATTTTGATTCATTGTAC
AAAGTATCagcaaaattgaatgagc
Run BLAST on NCBI

protein sequence of TCONS_00045757-protein

>TCONS_00045757-protein ID=TCONS_00045757-protein|Name=TCONS_00045757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MDDIIANVDNMRFDIEVALEMQLGIQPLPFPGMDKSASAICDFFISNRCT
RGQLCPLRHVRGNQAIVCKHWLRGLCKKGDDCEFLHKYDMEKMPECYFYI
KYGQCSNKECPFLHLNPEDKIKDCPWYDRGFCKHGPNCKNRHVRRVMCVN
YLCGFCPEGKECKFSHPRFEVQIVEERKPFAHIVCHACGEQGHKSTHCAV
ARRLNAEAAMRGETVPDAQSTTQQTEETTNPTENKAPPQRAHRPPAGMPR
ERIEPPAPTIVQGDPNAVGGGGGAAFVPFGKRPLEFVTCYKCRGKGHYAN
RCPFSTNQHRPPAGIPMSMQRYPMQHHHHQPHFIQPNTQPVVQQQQQQQV
PQVSQVPQPQQQPVS
Run BLAST on NCBI

transcript from alignment at scaffold_100:848192..853865-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045757 ID=TCONS_00045757|Name=TCONS_00045757|organism=Clytia hemisphaerica|type=transcript|length=5674bp|location=Sequence derived from alignment at scaffold_100:848192..853865- (Clytia hemisphaerica)
TTTTCGTCGTATTGGTAGTTGCAAGTAATAGTCTTTCTTTGTGACCTTTC
TTAATTTCACCCATTATCATAAATTTATTTCCAGACTACCCAAAACAATA
TAAAAACTACAAATATATGAAGTATAAAGATGGATGACATCATTGCTAAT
GTGGACAATATGCGCTTTGATATAGAAGTTGCATTGGAAATGCAGCTGGG
GATTCAACCTCTTCCTTTCCCTGGAATGGACAGTAAGTTTTCCGTACCAA
TGTTGAAATGATCTTTACTACTACATTCTTGTGAAGCTCTTCTAAAATCT
AAAATATCAAAACATTGTATTCAATGAAAAGTTATTATTCATATGAACTT
TTGTAACATAAAAACGTTACAGAAAGTCAAATCATCCAAAATTTAGAGAG
TAAACAAGTATATGTGTGCGCATTGACCTCAGGTAGCGAACTACTAAACT
GAGGACTGAAATGAGATTCAAACTCACGACTTTCGCATTACTAGTGCAAC
TGCTCTACTGACTTAGCTACCCATTCCACACTAGAAGCATGTTTGGGAAC
ATCGTCCGATTCTGGACTCGATCACTCCAGTAACCACTTGTAGCGTGAGA
TACCAATGAGATAAACTACAAAAGACTTTATTCGACATTAAAAGCTCACT
ACTTTGAGGTGCTTACTAAACAGGGGATGAAAGAATCGGAGATTGCACTT
CTCTATAATATTCAGAAACAAAGTGAAAGATGAAAATCAGGCAATGTTAT
GAAGCAAAGCAAGAAACTTTCTTTCGACAGCTGATTTTACAAAAAAGTGA
AGCTGTCGATCAGTAATTTACACTATTTACTCAATTTTCTTCAGGTTTCT
TAAGTCTTGAAATGCTGATTTAAATGTATTTCATGCTTTTTTTTATTTTT
TTAGAATCTGCGTCCGCAATTTGTGATTTTTTCATCTCAAACAGATGTAC
GAGAGGGCAGCTCTGTCCACTGAGGCATGTCAGGGGAAACCAGGCTATTG
TATGTAAACATTGGCTTCGTGGGCTGTGTAAGAAAGGAGACGACTGTGAA
TTTCTTCATAAATATGATATGGAAAAAATGCCTGAGTGCTATTTCTATAT
CAAATACGGTAAGACTAAACCTAATAAGATTACATTAAGGGTAGAAAGGT
CATCCTTGAGTTTTACATTTAGATCAATGTCTGCTAATAGCATTCAAACT
TTTTTATTGCAATCTCTATGAAATCATATCTTCAAACATTTTAAAATTAA
TCGTCTCCTCATTTATTTGCATGGAAGGGTGTTTTCAAAGTAAAATCGAA
ACTCGTTTTTCGTACCACTCTACCAGACTAAATGTAAAGAAAATTTTTCA
ATTTTGTCATGTAGGGTCTACACTAGAGATTTGCTTTTGTCCTTGGCACT
AATGTTAAAATCTTTATTCACAGTAAAACACTTCCCTTCTAATTATGCAC
AACTCCAATTCAATCCCACTTTAATTTACAGGGCAGTGCAGCAACAAAGA
ATGCCCATTTCTCCATTTGAATCCAGAAGATAAAATCAAAGACTGTCCCT
GGTACGATCGAGGCTTTTGTAAACATGGTATGTCTGTGTTGTTGTTTCCG
AAGAGGAAATATTTGTTTCATTCTCTTTTATTTATAAAAAGAAGTCAAAA
GTCAAGATAGACTTTTGCTGTTTTTCTTGCTTTTTGTATCTGGTGGAAAC
AGGTGGAAAGCCTGTTTATAAATTACGTCACAAACAGCGTTTGATTTGTC
TTTTAAGATGATTTCTAAGGTCGAGACTTCAAATCACACCTATCACACTG
AAAATATCACTTGCACTTCTTAGAAATCCTTTTGGGAAGGATTAGTCTTG
ATAGCCTTATTCTGAAAACGAGGCAATAGTTGTTCATTGCGTAATTTATG
AAAAGGCTTACTTACTTTTATGGGATAAATTCTCACGGGAATTTAATTTC
GTGGATGGCATTACTGGGAGACAATATTTTCACGATTTTATGCCTTATAC
TGCCAAATCTTGCATGTTGGTTGTTTGCATACGCATTATTAGCGCTTCTT
TGATGCCAGTAAACATTTAAAAAGTAATTTGTTTGACATTTTTTGAGTTT
TTCGTTTGAAAATATTTTGCTGATAAGGTCTTTCTAAATTTATATTTGGA
CTTGAAATTTCTCGGATGACACCGAAATCTGCTAAATTTCATACCATCAA
AGTATTGCGACATGAAAGGAAACCAAGCAGAACTAAATCCCAAAAAAGAC
ATCCATTTTCCTTGAAACGTAAAGAAAAACAAACGTTTGGCTTTTTTAAA
AAGCTATATTTTGTACTAAACTAAGTATATACAACTTTCACCTTGATGTC
TTTTTCGGAGTTACTTTCTTTTTATTTTACCTGATTTGTCAGCTGATAAT
AGCTTCTCATTCATGTATGTGCATACATGATATTTATGACTTGACGCTTT
AAATGGGAACACCCATAAAAGACCGGGTGCTTGCCACTGATTGTGAATTT
AAATAATAAAATCGTCGAAATCGCCCTTCTATTTTGGATACTTCCGTTTA
AAACATTACGTCATGAATATCATGAATTGTGACGTCAACGAGCAATTCAC
TTTTTTTCAGGTCCGAATTGTAAGAACCGACATGTCCGAAGAGTTATGTG
TGTCAACTACCTCTGTGGATTTTGTCCGGAGGGCAAAGAATGCAAATTTT
CTCAGTAAGCAAAACATTTTCATAATCAATTAACTAATTTTTCATAATTC
TTATATGCTTAATTGTTGGGGGGATTATTTTCCCTTTTTTCGATTTTTTA
AACCCCAAAATCACTTTATAATGATCCCACCATTTTATGACTTTTTACCA
AAAACTGTCAAAAACCTGCATTTTCCTAATGAAATTGACTAAAATTTCAT
TTCACTTCTTTCAAAGTTCCACCTCCCCGCTTATTCTACCAGATTCTACC
CCTACAATTAAGCACAGAAGAGTTACATTATAGTGAAATTTGATAATCTA
ATTGTAGTGGCTCAAAAACTAAGAAGACTATCCTAGAAGGCTTGGGTATG
TTGTGCTCATAATTGTTTTAAAAAGGCTGGTCTCCACTTGCGTGCGCTTT
GATCGCACCTTTTGCTTCAATCTTTTTTTGCTTGGAAAAAAGATTACATT
TTACGTTATAAAAATGTAGCGCGCGTTCGAAAAAAAAGTTGAAAACATTT
CAATTTTTTCAACCGTTACGTCAGATCGTGCCAATGAAATTCTTTCATTT
TTCTTTTGACTAATAGCGTGAAAGCTTTGCTTGAAAAAGTGGGATCACAG
CGCGCGCAAGTTGAGACTGGCCTTTAAGTTCTGCTTGAAGAATCCAAGTT
TCCCAAAATCATTTTCAAATCAATTTTGGAAATTAACCACATCTTTGCTT
CATCTTTTAGTCCACGCTTCGAGGTACAGATCGTAGAAGAACGTAAACCT
TTCGCTCACATCGTTTGTCATGCATGCGGTGAGCAAGGTCACAAGTCGAC
GCATTGTGCAGTTGCTAGGCGACTCAATGCTGAAGCTGCTATGAGGGTAA
GAGAACGACTTCTTTGACAAATGATATTCCTGGATATTCCCAAGATGAAT
AGTTATTCGTTCGCTTAAAGTGAGCACTTTTCTTGGCTACCACGTAGAAA
CCACTTTCAAGGGAATAAGTCTAATTACGCTAACATGGTTTCTACATAAT
AGCAAAAGTATAGCCATCTTAGCAGAAAAATAGAGATTTGTAAAATGAAA
CCGTCTCTCAAAATCACAAGAACCTTAGTGTTCCCTTTTAATAATTTTGG
GATTGTAAGAGCTCTGGATGAAAAAGATCTCTTGCGTCAGAGTCGTACCT
ATTGAGTTTGAAGTCTCGGGGCTAGAGAGGAATTTTCAACCATTCTCACG
CAAGAAAAAGTGAAGACTTAAGTTTACCCCGCATTTAGAAATTTTGTTTA
AAAAGCACACGGATCACGTGTTTTGGATGGGGAATAGGTGGCTTCCTTTC
CCATCCAGAAGTTTCTGCTGTTGAAATCAATGGCCATACATCGGTACATT
TCAAGCCTTGTGAGAGTAAAAAGGTGAGTTTTCGTAACTGGTCTCCGTAT
TTCTTTCATTTGAAGGGTGAGACTGTTCCCGACGCCCAAAGCACCACTCA
ACAAACAGAAGAAACAACCAACCCCACTGAGAACAAAGCGCCTCCTCAAC
GCGCCCATCGACCGCCAGCTGGTATGCCGCGGGAACGAATAGAACCGCCC
GCTCCAACGATTGTTCAGGGTGATCCGAACGCTGTTGGTGGAGGCGGAGG
GGCGGCTTTCGTACCTTTTGGAAAACGACCTCTCGAATTTGTCACGTGTT
ACAAGGTGAAATATATTTTCAAGAAAATTGACCTCTTTTTTTAATTGCTA
TTATGTTAAGTTATATGATAAGTGTTTACTTGATAATGTTTGCGACACAT
AGTGTGTAAGAGGATCATGGGTCGAGGTCATACAAAGAAAATGGGTTTTC
ATCAACAAATGAAGGGGCGAGAGTTACTTACTAGGATAAGAAAGTATCAA
CATCAAAACAAAAGGACATAGCTTACATTAGTATTTCTAGTAATTATTCA
CGAATCTTAATTTGTTTCTGTTTTTGTTTTAGTGCCGTGGAAAAGGTCAT
TACGCAAATCGGGTATGTAACCATAACATTTCTTTCTAATAAATATTGCA
CATTTCCTCTCAGTCGGATAAACCAGGCTCGCCTTCATATAACTTGGAAT
GTTCAATAAAGTGGAATTCTCAGAGATCAGCCTTAGCACTACAGTGGAGT
CTCCATAACTTGAAAACGCACGGGGAACACAAATTTGTTCAAAATTAAGG
AGATTTCGAGTTACGTAGTAGAGTTTAATAGGTATTGTTAACTGAAGGAA
CTATTAAACTTGTTCAAATTAAGGAGACATTCGAGTTATAGAGGTTCGAG
TTAAAGTACTATTTTCATATTCTATTTTTAGTGTCCATTTTCGACCAATC
AACACCGTCCACCAGCCGGCATTCCAATGTCAATGCAACGATATCCAATG
CAACATCATCATCATCAACCGCATTTCATTCAACCTAATACACAACCAGT
GGTCCAACAACAACAACAACAACAGGTACCTCAGGTATCTCAGGTACCTC
AACCTCAACAGCAACCTGTATCTTGATGATTCGTCGTTGTTATTTGTCGG
CTTTTTCTTGTCGGTGACGTTATCGGTTTTGGGGGGCTTTTTTCGACAAA
CGACAGAAGCTTTTGTTACTAAATACTTTAGGGTGCTTTGAAAAATTCTC
AGGATCATGTTGATTTTTTGGCAATATAGTGTGTCAAATGTATAATTTTC
ATACTTGCCAATCCTAATGATGCATTGGGGTGACAAAATAATAATTTTTT
TCAATCCCCCTGATAAATCACAACGTCATAGATATCTCAAACAAAAACTT
TATCCAGTTTCAAGGTTGTTTTTGTAAAATTTTTCATTTTTGTTTTGTAT
ATATTTATTATGACCCAATATATTGTTTATATACCTCTCAGCCATAAAAA
ATGTCATATATTTTTCTTTAGCCATCTTCCGCCCCCAGATTTTTTTTTGA
GAATCGGACTCCGTCACATTCGAGGGTATAGCATTTTGATTCATTGTACA
AAGTATCAGCAAAATTGAATGAGC

Coding sequence (CDS) from alignment at scaffold_100:848192..853865-

>TCONS_00045757 ID=TCONS_00045757|Name=TCONS_00045757|organism=Clytia hemisphaerica|type=CDS|length=8784bp|location=Sequence derived from alignment at scaffold_100:848192..853865- (Clytia hemisphaerica)
TGTCCATTTTCGACCAATCAACACCGTCCACCAGCCGGCATTCCAATGTC
AATGCAACGATATCCAATGCAACATCATCATCATCAACCGCATTTCATTC
AACCTAATACACAACCAGTGGTCCAACAACAACAACAACAACAGGTACCT
CAGGTATCTCAGGTACCTCAACCTCAACAGCAACCTGTATCTTGATGCCG
TGGAAAAGGTCATTACGCAAATCGGGGTGAGACTGTTCCCGACGCCCAAA
GCACCACTCAACAAACAGAAGAAACAACCAACCCCACTGAGAACAAAGCG
CCTCCTCAACGCGCCCATCGACCGCCAGCTGGTATGCCGCGGGAACGAAT
AGAACCGCCCGCTCCAACGATTGTTCAGGGTGATCCGAACGCTGTTGGTG
GAGGCGGAGGGGCGGCTTTCGTACCTTTTGGAAAACGACCTCTCGAATTT
GTCACGTGTTACAAGTCCACGCTTCGAGGTACAGATCGTAGAAGAACGTA
AACCTTTCGCTCACATCGTTTGTCATGCATGCGGTGAGCAAGGTCACAAG
TCGACGCATTGTGCAGTTGCTAGGCGACTCAATGCTGAAGCTGCTATGAG
GGTCCGAATTGTAAGAACCGACATGTCCGAAGAGTTATGTGTGTCAACTA
CCTCTGTGGATTTTGTCCGGAGGGCAAAGAATGCAAATTTTCTCAGGCAG
TGCAGCAACAAAGAATGCCCATTTCTCCATTTGAATCCAGAAGATAAAAT
CAAAGACTGTCCCTGGTACGATCGAGGCTTTTGTAAACATGAATCTGCGT
CCGCAATTTGTGATTTTTTCATCTCAAACAGATGTACGAGAGGGCAGCTC
TGTCCACTGAGGCATGTCAGGGGAAACCAGGCTATTGTATGTAAACATTG
GCTTCGTGGGCTGTGTAAGAAAGGAGACGACTGTGAATTTCTTCATAAAT
ATGATATGGAAAAAATGCCTGAGTGCTATTTCTATATCAAATACGATGGA
TGACATCATTGCTAATGTGGACAATATGCGCTTTGATATAGAAGTTGCAT
TGGAAATGCAGCTGGGGATTCAACCTCTTCCTTTCCCTGGAATGGACATG
TCCATTTTCGACCAATCAACACCGTCCACCAGCCGGCATTCCAATGTCAA
TGCAACGATATCCAATGCAACATCATCATCATCAACCGCATTTCATTCAA
CCTAATACACAACCAGTGGTCCAACAACAACAACAACAACAGGTACCTCA
GGTATCTCAGGTACCTCAACCTCAACAGCAACCTGTATCTTGATGCCGTG
GAAAAGGTCATTACGCAAATCGGGGTGAGACTGTTCCCGACGCCCAAAGC
ACCACTCAACAAACAGAAGAAACAACCAACCCCACTGAGAACAAAGCGCC
TCCTCAACGCGCCCATCGACCGCCAGCTGGTATGCCGCGGGAACGAATAG
AACCGCCCGCTCCAACGATTGTTCAGGGTGATCCGAACGCTGTTGGTGGA
GGCGGAGGGGCGGCTTTCGTACCTTTTGGAAAACGACCTCTCGAATTTGT
CACGTGTTACAAGTCCACGCTTCGAGGTACAGATCGTAGAAGAACGTAAA
CCTTTCGCTCACATCGTTTGTCATGCATGCGGTGAGCAAGGTCACAAGTC
GACGCATTGTGCAGTTGCTAGGCGACTCAATGCTGAAGCTGCTATGAGGG
TCCGAATTGTAAGAACCGACATGTCCGAAGAGTTATGTGTGTCAACTACC
TCTGTGGATTTTGTCCGGAGGGCAAAGAATGCAAATTTTCTCAGGCAGTG
CAGCAACAAAGAATGCCCATTTCTCCATTTGAATCCAGAAGATAAAATCA
AAGACTGTCCCTGGTACGATCGAGGCTTTTGTAAACATGAATCTGCGTCC
GCAATTTGTGATTTTTTCATCTCAAACAGATGTACGAGAGGGCAGCTCTG
TCCACTGAGGCATGTCAGGGGAAACCAGGCTATTGTATGTAAACATTGGC
TTCGTGGGCTGTGTAAGAAAGGAGACGACTGTGAATTTCTTCATAAATAT
GATATGGAAAAAATGCCTGAGTGCTATTTCTATATCAAATACGATGGATG
ACATCATTGCTAATGTGGACAATATGCGCTTTGATATAGAAGTTGCATTG
GAAATGCAGCTGGGGATTCAACCTCTTCCTTTCCCTGGAATGGACATGTC
CATTTTCGACCAATCAACACCGTCCACCAGCCGGCATTCCAATGTCAATG
CAACGATATCCAATGCAACATCATCATCATCAACCGCATTTCATTCAACC
TAATACACAACCAGTGGTCCAACAACAACAACAACAACAGGTACCTCAGG
TATCTCAGGTACCTCAACCTCAACAGCAACCTGTATCTTGATGCCGTGGA
AAAGGTCATTACGCAAATCGGGGTGAGACTGTTCCCGACGCCCAAAGCAC
CACTCAACAAACAGAAGAAACAACCAACCCCACTGAGAACAAAGCGCCTC
CTCAACGCGCCCATCGACCGCCAGCTGGTATGCCGCGGGAACGAATAGAA
CCGCCCGCTCCAACGATTGTTCAGGGTGATCCGAACGCTGTTGGTGGAGG
CGGAGGGGCGGCTTTCGTACCTTTTGGAAAACGACCTCTCGAATTTGTCA
CGTGTTACAAGTCCACGCTTCGAGGTACAGATCGTAGAAGAACGTAAACC
TTTCGCTCACATCGTTTGTCATGCATGCGGTGAGCAAGGTCACAAGTCGA
CGCATTGTGCAGTTGCTAGGCGACTCAATGCTGAAGCTGCTATGAGGGTC
CGAATTGTAAGAACCGACATGTCCGAAGAGTTATGTGTGTCAACTACCTC
TGTGGATTTTGTCCGGAGGGCAAAGAATGCAAATTTTCTCAGGCAGTGCA
GCAACAAAGAATGCCCATTTCTCCATTTGAATCCAGAAGATAAAATCAAA
GACTGTCCCTGGTACGATCGAGGCTTTTGTAAACATGAATCTGCGTCCGC
AATTTGTGATTTTTTCATCTCAAACAGATGTACGAGAGGGCAGCTCTGTC
CACTGAGGCATGTCAGGGGAAACCAGGCTATTGTATGTAAACATTGGCTT
CGTGGGCTGTGTAAGAAAGGAGACGACTGTGAATTTCTTCATAAATATGA
TATGGAAAAAATGCCTGAGTGCTATTTCTATATCAAATACGATGGATGAC
ATCATTGCTAATGTGGACAATATGCGCTTTGATATAGAAGTTGCATTGGA
AATGCAGCTGGGGATTCAACCTCTTCCTTTCCCTGGAATGGACATGTCCA
TTTTCGACCAATCAACACCGTCCACCAGCCGGCATTCCAATGTCAATGCA
ACGATATCCAATGCAACATCATCATCATCAACCGCATTTCATTCAACCTA
ATACACAACCAGTGGTCCAACAACAACAACAACAACAGGTACCTCAGGTA
TCTCAGGTACCTCAACCTCAACAGCAACCTGTATCTTGATGCCGTGGAAA
AGGTCATTACGCAAATCGGGGTGAGACTGTTCCCGACGCCCAAAGCACCA
CTCAACAAACAGAAGAAACAACCAACCCCACTGAGAACAAAGCGCCTCCT
CAACGCGCCCATCGACCGCCAGCTGGTATGCCGCGGGAACGAATAGAACC
GCCCGCTCCAACGATTGTTCAGGGTGATCCGAACGCTGTTGGTGGAGGCG
GAGGGGCGGCTTTCGTACCTTTTGGAAAACGACCTCTCGAATTTGTCACG
TGTTACAAGTCCACGCTTCGAGGTACAGATCGTAGAAGAACGTAAACCTT
TCGCTCACATCGTTTGTCATGCATGCGGTGAGCAAGGTCACAAGTCGACG
CATTGTGCAGTTGCTAGGCGACTCAATGCTGAAGCTGCTATGAGGGTCCG
AATTGTAAGAACCGACATGTCCGAAGAGTTATGTGTGTCAACTACCTCTG
TGGATTTTGTCCGGAGGGCAAAGAATGCAAATTTTCTCAGGCAGTGCAGC
AACAAAGAATGCCCATTTCTCCATTTGAATCCAGAAGATAAAATCAAAGA
CTGTCCCTGGTACGATCGAGGCTTTTGTAAACATGAATCTGCGTCCGCAA
TTTGTGATTTTTTCATCTCAAACAGATGTACGAGAGGGCAGCTCTGTCCA
CTGAGGCATGTCAGGGGAAACCAGGCTATTGTATGTAAACATTGGCTTCG
TGGGCTGTGTAAGAAAGGAGACGACTGTGAATTTCTTCATAAATATGATA
TGGAAAAAATGCCTGAGTGCTATTTCTATATCAAATACGATGGATGACAT
CATTGCTAATGTGGACAATATGCGCTTTGATATAGAAGTTGCATTGGAAA
TGCAGCTGGGGATTCAACCTCTTCCTTTCCCTGGAATGGACATGTCCATT
TTCGACCAATCAACACCGTCCACCAGCCGGCATTCCAATGTCAATGCAAC
GATATCCAATGCAACATCATCATCATCAACCGCATTTCATTCAACCTAAT
ACACAACCAGTGGTCCAACAACAACAACAACAACAGGTACCTCAGGTATC
TCAGGTACCTCAACCTCAACAGCAACCTGTATCTTGATGCCGTGGAAAAG
GTCATTACGCAAATCGGGGTGAGACTGTTCCCGACGCCCAAAGCACCACT
CAACAAACAGAAGAAACAACCAACCCCACTGAGAACAAAGCGCCTCCTCA
ACGCGCCCATCGACCGCCAGCTGGTATGCCGCGGGAACGAATAGAACCGC
CCGCTCCAACGATTGTTCAGGGTGATCCGAACGCTGTTGGTGGAGGCGGA
GGGGCGGCTTTCGTACCTTTTGGAAAACGACCTCTCGAATTTGTCACGTG
TTACAAGTCCACGCTTCGAGGTACAGATCGTAGAAGAACGTAAACCTTTC
GCTCACATCGTTTGTCATGCATGCGGTGAGCAAGGTCACAAGTCGACGCA
TTGTGCAGTTGCTAGGCGACTCAATGCTGAAGCTGCTATGAGGGTCCGAA
TTGTAAGAACCGACATGTCCGAAGAGTTATGTGTGTCAACTACCTCTGTG
GATTTTGTCCGGAGGGCAAAGAATGCAAATTTTCTCAGGCAGTGCAGCAA
CAAAGAATGCCCATTTCTCCATTTGAATCCAGAAGATAAAATCAAAGACT
GTCCCTGGTACGATCGAGGCTTTTGTAAACATGAATCTGCGTCCGCAATT
TGTGATTTTTTCATCTCAAACAGATGTACGAGAGGGCAGCTCTGTCCACT
GAGGCATGTCAGGGGAAACCAGGCTATTGTATGTAAACATTGGCTTCGTG
GGCTGTGTAAGAAAGGAGACGACTGTGAATTTCTTCATAAATATGATATG
GAAAAAATGCCTGAGTGCTATTTCTATATCAAATACGATGGATGACATCA
TTGCTAATGTGGACAATATGCGCTTTGATATAGAAGTTGCATTGGAAATG
CAGCTGGGGATTCAACCTCTTCCTTTCCCTGGAATGGACATGTCCATTTT
CGACCAATCAACACCGTCCACCAGCCGGCATTCCAATGTCAATGCAACGA
TATCCAATGCAACATCATCATCATCAACCGCATTTCATTCAACCTAATAC
ACAACCAGTGGTCCAACAACAACAACAACAACAGGTACCTCAGGTATCTC
AGGTACCTCAACCTCAACAGCAACCTGTATCTTGATGCCGTGGAAAAGGT
CATTACGCAAATCGGGGTGAGACTGTTCCCGACGCCCAAAGCACCACTCA
ACAAACAGAAGAAACAACCAACCCCACTGAGAACAAAGCGCCTCCTCAAC
GCGCCCATCGACCGCCAGCTGGTATGCCGCGGGAACGAATAGAACCGCCC
GCTCCAACGATTGTTCAGGGTGATCCGAACGCTGTTGGTGGAGGCGGAGG
GGCGGCTTTCGTACCTTTTGGAAAACGACCTCTCGAATTTGTCACGTGTT
ACAAGTCCACGCTTCGAGGTACAGATCGTAGAAGAACGTAAACCTTTCGC
TCACATCGTTTGTCATGCATGCGGTGAGCAAGGTCACAAGTCGACGCATT
GTGCAGTTGCTAGGCGACTCAATGCTGAAGCTGCTATGAGGGTCCGAATT
GTAAGAACCGACATGTCCGAAGAGTTATGTGTGTCAACTACCTCTGTGGA
TTTTGTCCGGAGGGCAAAGAATGCAAATTTTCTCAGGCAGTGCAGCAACA
AAGAATGCCCATTTCTCCATTTGAATCCAGAAGATAAAATCAAAGACTGT
CCCTGGTACGATCGAGGCTTTTGTAAACATGAATCTGCGTCCGCAATTTG
TGATTTTTTCATCTCAAACAGATGTACGAGAGGGCAGCTCTGTCCACTGA
GGCATGTCAGGGGAAACCAGGCTATTGTATGTAAACATTGGCTTCGTGGG
CTGTGTAAGAAAGGAGACGACTGTGAATTTCTTCATAAATATGATATGGA
AAAAATGCCTGAGTGCTATTTCTATATCAAATACGATGGATGACATCATT
GCTAATGTGGACAATATGCGCTTTGATATAGAAGTTGCATTGGAAATGCA
GCTGGGGATTCAACCTCTTCCTTTCCCTGGAATGGACATGTCCATTTTCG
ACCAATCAACACCGTCCACCAGCCGGCATTCCAATGTCAATGCAACGATA
TCCAATGCAACATCATCATCATCAACCGCATTTCATTCAACCTAATACAC
AACCAGTGGTCCAACAACAACAACAACAACAGGTACCTCAGGTATCTCAG
GTACCTCAACCTCAACAGCAACCTGTATCTTGATGCCGTGGAAAAGGTCA
TTACGCAAATCGGGGTGAGACTGTTCCCGACGCCCAAAGCACCACTCAAC
AAACAGAAGAAACAACCAACCCCACTGAGAACAAAGCGCCTCCTCAACGC
GCCCATCGACCGCCAGCTGGTATGCCGCGGGAACGAATAGAACCGCCCGC
TCCAACGATTGTTCAGGGTGATCCGAACGCTGTTGGTGGAGGCGGAGGGG
CGGCTTTCGTACCTTTTGGAAAACGACCTCTCGAATTTGTCACGTGTTAC
AAGTCCACGCTTCGAGGTACAGATCGTAGAAGAACGTAAACCTTTCGCTC
ACATCGTTTGTCATGCATGCGGTGAGCAAGGTCACAAGTCGACGCATTGT
GCAGTTGCTAGGCGACTCAATGCTGAAGCTGCTATGAGGGTCCGAATTGT
AAGAACCGACATGTCCGAAGAGTTATGTGTGTCAACTACCTCTGTGGATT
TTGTCCGGAGGGCAAAGAATGCAAATTTTCTCAGGCAGTGCAGCAACAAA
GAATGCCCATTTCTCCATTTGAATCCAGAAGATAAAATCAAAGACTGTCC
CTGGTACGATCGAGGCTTTTGTAAACATGAATCTGCGTCCGCAATTTGTG
ATTTTTTCATCTCAAACAGATGTACGAGAGGGCAGCTCTGTCCACTGAGG
CATGTCAGGGGAAACCAGGCTATTGTATGTAAACATTGGCTTCGTGGGCT
GTGTAAGAAAGGAGACGACTGTGAATTTCTTCATAAATATGATATGGAAA
AAATGCCTGAGTGCTATTTCTATATCAAATACGATGGATGACATCATTGC
TAATGTGGACAATATGCGCTTTGATATAGAAGTTGCATTGGAAATGCAGC
TGGGGATTCAACCTCTTCCTTTCCCTGGAATGGACATGTCCATTTTCGAC
CAATCAACACCGTCCACCAGCCGGCATTCCAATGTCAATGCAACGATATC
CAATGCAACATCATCATCATCAACCGCATTTCATTCAACCTAATACACAA
CCAGTGGTCCAACAACAACAACAACAACAGGTACCTCAGGTATCTCAGGT
ACCTCAACCTCAACAGCAACCTGTATCTTGATGCCGTGGAAAAGGTCATT
ACGCAAATCGGGGTGAGACTGTTCCCGACGCCCAAAGCACCACTCAACAA
ACAGAAGAAACAACCAACCCCACTGAGAACAAAGCGCCTCCTCAACGCGC
CCATCGACCGCCAGCTGGTATGCCGCGGGAACGAATAGAACCGCCCGCTC
CAACGATTGTTCAGGGTGATCCGAACGCTGTTGGTGGAGGCGGAGGGGCG
GCTTTCGTACCTTTTGGAAAACGACCTCTCGAATTTGTCACGTGTTACAA
GTCCACGCTTCGAGGTACAGATCGTAGAAGAACGTAAACCTTTCGCTCAC
ATCGTTTGTCATGCATGCGGTGAGCAAGGTCACAAGTCGACGCATTGTGC
AGTTGCTAGGCGACTCAATGCTGAAGCTGCTATGAGGGTCCGAATTGTAA
GAACCGACATGTCCGAAGAGTTATGTGTGTCAACTACCTCTGTGGATTTT
GTCCGGAGGGCAAAGAATGCAAATTTTCTCAGGCAGTGCAGCAACAAAGA
ATGCCCATTTCTCCATTTGAATCCAGAAGATAAAATCAAAGACTGTCCCT
GGTACGATCGAGGCTTTTGTAAACATGAATCTGCGTCCGCAATTTGTGAT
TTTTTCATCTCAAACAGATGTACGAGAGGGCAGCTCTGTCCACTGAGGCA
TGTCAGGGGAAACCAGGCTATTGTATGTAAACATTGGCTTCGTGGGCTGT
GTAAGAAAGGAGACGACTGTGAATTTCTTCATAAATATGATATGGAAAAA
ATGCCTGAGTGCTATTTCTATATCAAATACGATGGATGACATCATTGCTA
ATGTGGACAATATGCGCTTTGATATAGAAGTTGCATTGGAAATGCAGCTG
GGGATTCAACCTCTTCCTTTCCCTGGAATGGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029237XLOC_029237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045757-exon-scaffold_100-1575043694:853634..853865TCONS_00045757-exon-scaffold_100-1575043694:853634..853865Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1575043694:852758..852961TCONS_00045757-exon-scaffold_100-1575043694:852758..852961Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1575043694:852289..852384TCONS_00045757-exon-scaffold_100-1575043694:852289..852384Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1575043694:851162..851255TCONS_00045757-exon-scaffold_100-1575043694:851162..851255Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1575043694:850320..850455TCONS_00045757-exon-scaffold_100-1575043694:850320..850455Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1575043694:849511..849750TCONS_00045757-exon-scaffold_100-1575043694:849511..849750Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1575043694:849204..849233TCONS_00045757-exon-scaffold_100-1575043694:849204..849233Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1575043694:848192..848884TCONS_00045757-exon-scaffold_100-1575043694:848192..848884Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1510915933:853634..853865TCONS_00045757-exon-scaffold_100-1510915933:853634..853865Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1510915933:852758..852961TCONS_00045757-exon-scaffold_100-1510915933:852758..852961Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1510915933:852289..852384TCONS_00045757-exon-scaffold_100-1510915933:852289..852384Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1510915933:851162..851255TCONS_00045757-exon-scaffold_100-1510915933:851162..851255Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1510915933:850320..850455TCONS_00045757-exon-scaffold_100-1510915933:850320..850455Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1510915933:849511..849750TCONS_00045757-exon-scaffold_100-1510915933:849511..849750Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1510915933:849204..849233TCONS_00045757-exon-scaffold_100-1510915933:849204..849233Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1510915933:848192..848884TCONS_00045757-exon-scaffold_100-1510915933:848192..848884Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1491911889:853634..853865TCONS_00045757-exon-scaffold_100-1491911889:853634..853865Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1491911889:852758..852961TCONS_00045757-exon-scaffold_100-1491911889:852758..852961Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1491911889:852289..852384TCONS_00045757-exon-scaffold_100-1491911889:852289..852384Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1491911889:851162..851255TCONS_00045757-exon-scaffold_100-1491911889:851162..851255Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1491911889:850320..850455TCONS_00045757-exon-scaffold_100-1491911889:850320..850455Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1491911889:849511..849750TCONS_00045757-exon-scaffold_100-1491911889:849511..849750Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1491911889:849204..849233TCONS_00045757-exon-scaffold_100-1491911889:849204..849233Clytia hemisphaericaexon
TCONS_00045757-exon-scaffold_100-1491911889:848192..848884TCONS_00045757-exon-scaffold_100-1491911889:848192..848884Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045757-proteinTCONS_00045757-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:848192..853865 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
62.4839	60.6121	21.7277	17.239	28.2455	21.1478	15.9763	17.4637	16.6442	15.4135	15.269	12.4842	9.96101	9.8597	10.7903	11.8078	18.6572	13.4329	4.92566	5.98737	15.1824	14.4357	44.8908	38.3484	13.2162	14.3515	6.86706	4.69175	20.0005	22.7326
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00045757 vs. Swiss-Prot (Human)
Match: CPSF4 (Cleavage and polyadenylation specificity factor subunit 4 OS=Homo sapiens GN=CPSF4 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.017e-92
Identity = 122/171 (71.35%), Postives = 148/171 (86.55%), Query Frame = 1 
Query:  130 MDDIIANVDNMRFDIEVALEMQLGIQPLPFPGMDKSASAICDFFISNRCTRGQLCPLRHVRGNQAIVCKHWLRGLCKKGDDCEFLHKYDMEKMPECYFYIKYGQCSNKECPFLHLNPEDKIKDCPWYDRGFCKHGPNCKNRHVRRVMCVNYLCGFCPEGKECKFSHPRFEV 642
            M +IIA+VD+++FD+E+A+E QLG QPLPFPGMDKS +A+C+FF+   C +G +CP RH+ G + +VCKHWLRGLCKKGD CEFLH+YDM KMPECYFY K+G+CSNKECPFLH++PE KIKDCPWYDRGFCKHGP C++RH RRV+CVNYL GFCPEG  CKF HPRFE+
Sbjct:    1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFEL 171
The following BLAST results are available for this feature:
BLAST of TCONS_00045757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPSF42.017e-9271.35Cleavage and polyadenylation specificity factor su... [more]
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