TCONS_00045768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045768
Unique NameTCONS_00045768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045768 ID=TCONS_00045768|Name=TCONS_00045768|organism=Clytia hemisphaerica|type=transcript|length=642bp
AGCTATATCATTTTGCATAGCAGAGAAAATGACTTTTTCCTCTGATtaag
atgttttgaaaaattttggatcagtgattttttatttctaatcGTTTTTA
ACCAATAAGTGACcgctttttcgatattttcgatATACCAATATGGCATC
CTTGATATTTATGGCATTCTTGCGCATTGCCTAACTGTCTCCCTGATCTT
CTTCTGGATTTCACTGCTTACAGGGCTGGTTCCCCTACCATTCTCTTGTA
TCTGTATATGCCCCATGGTGAATTTATCTTGTTGGTGGCCTTCCAGATTG
GCTGCTGATCGTAGTTAGTAGCATTTGTTAGTTTAAGGGATGCAGCCAAT
CTTCTTTAGCAATAGAAAGATATAAAATACAATGTTACTGTCAAAGTCCT
CAAGGCTTAATAAAATGCTTGTCCTGGTAACAGCTTGTTCAGAATATATC
AAGGGTTCTTtacaaattgtttgaaaagggGTCCAAAATTAGCAATTCCA
GCCTCTCAAATTTGAAAACCCTTTTTCATACCATACCAGTGGGCAACGTC
ATTTGACCAGATAATTTTGCCCCCTCAGTTTGCCCTCAAGGAGAACAAAA
GTATTGAAGCCCAAAGTTTGATACTTTTGTACATAGTTCGtc
Run BLAST on NCBI

transcript from alignment at scaffold_100:63856..64497

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045768 ID=TCONS_00045768|Name=TCONS_00045768|organism=Clytia hemisphaerica|type=transcript|length=642bp|location=Sequence derived from alignment at scaffold_100:63856..64497 (Clytia hemisphaerica)
gaCGAACTATGTACAAAAGTATCAAACTTTGGGCTTCAATACTTTTGTTC
TCCTTGAGGGCAAACTGAGGGGGCAAAATTATCTGGTCAAATGACGTTGC
CCACTGGTATGGTATGAAAAAGGGTTTTCAAATTTGAGAGGCTGGAATTG
CTAATTTTGGACcccttttcaaacaatttgtaAAGAACCCTTGATATATT
CTGAACAAGCTGTTACCAGGACAAGCATTTTATTAAGCCTTGAGGACTTT
GACAGTAACATTGTATTTTATATCTTTCTATTGCTAAAGAAGATTGGCTG
CATCCCTTAAACTAACAAATGCTACTAACTACGATCAGCAGCCAATCTGG
AAGGCCACCAACAAGATAAATTCACCATGGGGCATATACAGATACAAGAG
AATGGTAGGGGAACCAGCCCTGTAAGCAGTGAAATCCAGAAGAAGATCAG
GGAGACAGTTAGGCAATGCGCAAGAATGCCATAAATATCAAGGATGCCAT
ATTGGTATatcgaaaatatcgaaaaagcgGTCACTTATTGGTTAAAAACg
attagaaataaaaaatcactgatccaaaatttttcaaaacatcttaATCA
GAGGAAAAAGTCATTTTCTCTGCTATGCAAAATGATATAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029246XLOC_029246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045768-exon-scaffold_100-1491911889:63856..64497TCONS_00045768-exon-scaffold_100-1491911889:63856..64497Clytia hemisphaericaexon
TCONS_00045768-exon-scaffold_100-1510915933:63856..64497TCONS_00045768-exon-scaffold_100-1510915933:63856..64497Clytia hemisphaericaexon
TCONS_00045768-exon-scaffold_100-1575043694:63856..64497TCONS_00045768-exon-scaffold_100-1575043694:63856..64497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:63856..64497 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.491608	0.239698	0.927707	0.363047	0.331481	0	0.21068	0.197236	0.207134	0.342093	0.249033	0.545681	0.817383	0.509316	0.186101	0.299572	0.676589	0.504351	0.0870984	0.455711	0.712972	0.811447	0	0	0.351879	0.235533	0.112349	0.71941	0.181882	0.277964
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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