TCONS_00045775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045775
Unique NameTCONS_00045775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045775 ID=TCONS_00045775|Name=TCONS_00045775|organism=Clytia hemisphaerica|type=transcript|length=316bp
TTTTAATAACGTTacatcaaaaaagaaagattttgtctataaaataaatt
aaaaagtaTCTTATCATAAATATAATATGTTGAATATATATCTGAATTTG
TAAATTACTTAAAATTTAGGGGCGTTGGTTTAGTTTGGGGGTATTTCAGT
AGGTTAGTGACTACTCAGTAATTGCCTTTCTTTGGAGGGTGCAACTAGTA
GGGGGCTGATGCTTTGGctaaagggctacttagactacacaatatattga
cgaacaatattcgacaatatggtttgcggaccgtaatgtacgaagtaaac
aactggtactctatta
Run BLAST on NCBI

transcript from alignment at scaffold_100:128664..128979

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045775 ID=TCONS_00045775|Name=TCONS_00045775|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at scaffold_100:128664..128979 (Clytia hemisphaerica)
taatagagtaccagttgtttacttcgtacattacggtccgcaaaccatat
tgtcgaatattgttcgtcaatatattgtgtagtctaagtagccctttagC
CAAAGCATCAGCCCCCTACTAGTTGCACCCTCCAAAGAAAGGCAATTACT
GAGTAGTCACTAACCTACTGAAATACCCCCAAACTAAACCAACGCCCCTA
AATTTTAAGTAATTTACAAATTCAGATATATATTCAACATATTATATTTA
TGATAAGAtactttttaatttattttatagacaaaatctttcttttttga
tgtAACGTTATTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029253XLOC_029253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045775-exon-scaffold_100-1491911889:128664..128979TCONS_00045775-exon-scaffold_100-1491911889:128664..128979Clytia hemisphaericaexon
TCONS_00045775-exon-scaffold_100-1510915933:128664..128979TCONS_00045775-exon-scaffold_100-1510915933:128664..128979Clytia hemisphaericaexon
TCONS_00045775-exon-scaffold_100-1575043694:128664..128979TCONS_00045775-exon-scaffold_100-1575043694:128664..128979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:128664..128979 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.957371	1.40281	4.57051	7.50289	11.3766	3.58333	5.42743	10.2771	6.66549	7.39554	7.06473	5.40708	13.4722	16.2412	4.63232	4.11417	7.88637	8.06191	13.0905	4.38955	20.3384	20.1739	15.6021	12.1061	0.837048	1.19324	86.1199	142.724	5.64836	6.56777
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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