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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045782 ID=TCONS_00045782|Name=TCONS_00045782|organism=Clytia hemisphaerica|type=transcript|length=1435bp
TTGGTTTATGAATTTGAGTagttattttcattgaaataaatttcttcttg
tactatattgtaaaaaatattgtaaataatATATCCATAGCTAGTTTGAT
AAACCCTATACCTTTCCAATCGCATttcgaatacaccttttcgaccgtag
tcgcgcggtcaggcgtgtGCCCCTaattaattatccccctaaactcgatc
caacctttttttgacaccttttttcTATCGTCTATAGGTACGAAAGAAAG
ACTgggggacggttttagggtggtaaaacggaaaAAAGAATGCCCGCGTG
GCAATTGACGGCTACAGTCGAAATAAGTTTATCAAGTTTCAATAATGTGT
CGTACACTTTTAAAGATGATTAGAACATACAGTCTCTCCCAAAGATTAAG
ATTGAGATGATTCAATCAAGGACATTTGTACATAAGATTCGTGTTTTTAT
TAcatgattattttttttcaatattctgTATATAATCGCAATAAAGGGCG
AACCAATCATAGAATCGACTATTGTTACCGGCTGTTAATTTTTCTGTTCA
TGCTTCAATTTCTATGCTTGCTTTCAATTTTCTCTAAACTTAAAGGGCTC
TCCATCACATAAATAATTTACTCTATCCCGATTTTGAAGTCTCTGAATTT
AAGGATTGACTTCAAAGTTATTACCTAACCCAGGAAAGTAATAATCCTTC
GACTTTATTCAATTGATCCGCCTTCAGTAAGTTGGACCTACACTTgatga
attattttcaaatagtttttgcACTCAAGCTTCTTCTTTGCGTCAATAAT
CGACTTTGACTTGGGTGTTCCAGTGTAATTCTACTGTTTGATTGGctttt
gaaattattattcCATGTAGATGTTTCTTGTATGTCTTTCATATTATGTT
GGCCATAAGAAGTATTTGAGAAAGTAAAATAACAATCACTTTTAGATGAA
GAAGGGCGTTTCTTTTGGGCGATGGGTGGTGATGACAGGCGGTTATCTTG
TGGTGAATAAGTAGGCGATATAACACGGCGATTTCTGGCTGAACTCACGT
TGGATCTTATTGTTTGTTTATCAGAGTTTGGTGTTCTGATGCGTTCGTGT
GTCCACGACTTTGTATCCAAACGATCAAGCCGTTTATTAATTTGTTGTAG
ATCTCGTTGTAGTTTCAAAGTGTCTGATCTATGATGTTTCAACCATATTT
TCTGTACTTTTTCTAAATGTTTGATTTGAACGCCAGTTTTGAGTTCAAGG
TTTCTATTTTGTTTTCGTAAAGTTGGTGTAAAAAACCAAGGTGAGAATTG
ATCATAATATTTCTGGTAACTCACGTTGAGTTTCTGGTCCGTCATTTTAT
CAAAGATGCTTATATCTTCTCTTATTCTTTTTACTGAAAATAAACATATC
ACGgttaggaaaataaaaaatatcataaagaagCT Run BLAST on NCBI protein sequence of TCONS_00045782-protein >TCONS_00045782-protein ID=TCONS_00045782-protein|Name=TCONS_00045782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
SFFMIFFIFLTVICLFSVKRIREDISIFDKMTDQKLNVSYQKYYDQFSPW
FFTPTLRKQNRNLELKTGVQIKHLEKVQKIWLKHHRSDTLKLQRDLQQIN
KRLDRLDTKSWTHERIRTPNSDKQTIRSNVSSARNRRVISPTYSPQDNRL
SSPPIAQKKRPSSSKSDCYFTFSNTSYGQHNMKDIQETSTWNNNFKSQSN
SRITLEHPSQSRLLTQRRSLSAKTI Run BLAST on NCBI transcript from alignment at scaffold_100:467994..469428 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045782 ID=TCONS_00045782|Name=TCONS_00045782|organism=Clytia hemisphaerica|type=transcript|length=1435bp|location=Sequence derived from alignment at scaffold_100:467994..469428 (Clytia hemisphaerica)
AGcttctttatgatattttttattttcctaacCGTGATATGTTTATTTTC
AGTAAAAAGAATAAGAGAAGATATAAGCATCTTTGATAAAATGACGGACC
AGAAACTCAACGTGAGTTACCAGAAATATTATGATCAATTCTCACCTTGG
TTTTTTACACCAACTTTACGAAAACAAAATAGAAACCTTGAACTCAAAAC
TGGCGTTCAAATCAAACATTTAGAAAAAGTACAGAAAATATGGTTGAAAC
ATCATAGATCAGACACTTTGAAACTACAACGAGATCTACAACAAATTAAT
AAACGGCTTGATCGTTTGGATACAAAGTCGTGGACACACGAACGCATCAG
AACACCAAACTCTGATAAACAAACAATAAGATCCAACGTGAGTTCAGCCA
GAAATCGCCGTGTTATATCGCCTACTTATTCACCACAAGATAACCGCCTG
TCATCACCACCCATCGCCCAAAAGAAACGCCCTTCTTCATCTAAAAGTGA
TTGTTATTTTACTTTCTCAAATACTTCTTATGGCCAACATAATATGAAAG
ACATACAAGAAACATCTACATGgaataataatttcaaaagCCAATCAAAC
AGTAGAATTACACTGGAACACCCAAGTCAAAGTCGATTATTGACGCAAAG
AAGAAGCTTGAGTgcaaaaactatttgaaaataattcatcAAGTGTAGGT
CCAACTTACTGAAGGCGGATCAATTGAATAAAGTCGAAGGATTATTACTT
TCCTGGGTTAGGTAATAACTTTGAAGTCAATCCTTAAATTCAGAGACTTC
AAAATCGGGATAGAGTAAATTATTTATGTGATGGAGAGCCCTTTAAGTTT
AGAGAAAATTGAAAGCAAGCATAGAAATTGAAGCATGAACAGAAAAATTA
ACAGCCGGTAACAATAGTCGATTCTATGATTGGTTCGCCCTTTATTGCGA
TTATATAcagaatattgaaaaaaaataatcatgTAATAAAAACACGAATC
TTATGTACAAATGTCCTTGATTGAATCATCTCAATCTTAATCTTTGGGAG
AGACTGTATGTTCTAATCATCTTTAAAAGTGTACGACACATTATTGAAAC
TTGATAAACTTATTTCGACTGTAGCCGTCAATTGCCACGCGGGCATTCTT
TtttccgttttaccaccctaaaaccgtcccccAGTCTTTCTTTCGTACCT
ATAGACGATAgaaaaaaggtgtcaaaaaaaggttggatcgagtttagggg
gataattaattAGGGGCacacgcctgaccgcgcgactacggtcgaaaagg
tgtattcgaaATGCGATTGGAAAGGTATAGGGTTTATCAAACTAGCTATG
GATATattatttacaatattttttacaatatagtacaagaagaaatttat
ttcaatgaaaataactACTCAAATTCATAAACCAA Coding sequence (CDS) from alignment at scaffold_100:467994..469428 >TCONS_00045782 ID=TCONS_00045782|Name=TCONS_00045782|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_100:467994..469428 (Clytia hemisphaerica)
AGcttctttatgatattttttattttcctaacCGTGATATGTTTATTTTC
AGTAAAAAGAATAAGAGAAGATATAAGCATCTTTGATAAAATGACGGACC
AGAAACTCAACGTGAGTTACCAGAAATATTATGATCAATTCTCACCTTGG
TTTTTTACACCAACTTTACGAAAACAAAATAGAAACCTTGAACTCAAAAC
TGGCGTTCAAATCAAACATTTAGAAAAAGTACAGAAAATATGGTTGAAAC
ATCATAGATCAGACACTTTGAAACTACAACGAGATCTACAACAAATTAAT
AAACGGCTTGATCGTTTGGATACAAAGTCGTGGACACACGAACGCATCAG
AACACCAAACTCTGATAAACAAACAATAAGATCCAACGTGAGTTCAGCCA
GAAATCGCCGTGTTATATCGCCTACTTATTCACCACAAGATAACCGCCTG
TCATCACCACCCATCGCCCAAAAGAAACGCCCTTCTTCATCTAAAAGTGA
TTGTTATTTTACTTTCTCAAATACTTCTTATGGCCAACATAATATGAAAG
ACATACAAGAAACATCTACATGgaataataatttcaaaagCCAATCAAAC
AGTAGAATTACACTGGAACACCCAAGTCAAAGTCGATTATTGACGCAAAG
AAGAAGCTTGAGTgcaaaaactatttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045782-exon-scaffold_100-1491911889:467994..469428 | TCONS_00045782-exon-scaffold_100-1491911889:467994..469428 | Clytia hemisphaerica | exon |
| TCONS_00045782-exon-scaffold_100-1510915933:467994..469428 | TCONS_00045782-exon-scaffold_100-1510915933:467994..469428 | Clytia hemisphaerica | exon |
| TCONS_00045782-exon-scaffold_100-1575043694:467994..469428 | TCONS_00045782-exon-scaffold_100-1575043694:467994..469428 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:467994..469428 . |
Blast
The following BLAST results are available for this feature:
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