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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045808 ID=TCONS_00045808|Name=TCONS_00045808|organism=Clytia hemisphaerica|type=transcript|length=2317bpRun BLAST on NCBI protein sequence of TCONS_00045808-protein >TCONS_00045808-protein ID=TCONS_00045808-protein|Name=TCONS_00045808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=722bp MAGKKKSLKKRFVCFNPLNRKKAKRKLDEEEKKEDEQAELLAQNPDPEAQRun BLAST on NCBI transcript from alignment at scaffold_101:163055..178395+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045808 ID=TCONS_00045808|Name=TCONS_00045808|organism=Clytia hemisphaerica|type=transcript|length=15341bp|location=Sequence derived from alignment at scaffold_101:163055..178395+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_101:163055..178395+ >TCONS_00045808 ID=TCONS_00045808|Name=TCONS_00045808|organism=Clytia hemisphaerica|type=CDS|length=28158bp|location=Sequence derived from alignment at scaffold_101:163055..178395+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045808 vs. Swiss-Prot (Human)
Match: DLG1 (Disks large homolog 1 OS=Homo sapiens GN=DLG1 PE=1 SV=2) HSP 1 Score: 526.939 bits (1356), Expect = 1.111e-173 Identity = 330/619 (53.31%), Postives = 420/619 (67.85%), Query Frame = 2
Query: 356 EVTLQKXXXXXXXXXXXXKDAPHIDNDPSIYITKIIQDGAAQRDGRIQVGDIILKVNDVSTVDVNHSVAVKALKDAGEDVKLVIKRVVSQEENLI-IHLHKGDPGLGFTIAGGTDSEHVPEDDGIFVTMIIPGGAAHTDGQLQIRDKITQVNDTPLKNTTHENAVLVLKSTGEDVILHVTRRKDVPVEQQSVAMVTTNVVVNDPDSPPSSVTDAEPEPK----IPVEVEDGEDGLPEEKAPDVSSSELAAHTVDESEADESSEPRTVILLRGPSGLGFNIVGGEDGEGIFISFILAGGPADLSGQVKRGDQILYVNEVXXXXXXXXXXXXXXXXXXTEVTLKLQHKPQEYNRFEQKIHQLRDRMMNSTGGGS---LKTSAKRTLYVRTLFEYDKTKDSGLPSHGLSFKFGDILHVTNASDDEWWQAVRLNEDGESGEMGVIPSKXXXXXXXXXXQKTVKFKQAMIEEXXXXXXXXXXXXXXXXXXFNFAKLRPFKGQ----QNNKGEGEGDPSASDGD-QLQKTEDMILSYESVCQEELKYTRPVIILGPLKDRLNDDLIQEFPNEFGSCVPHTTREPREHEVSGRDYHFVDSREKMEQDIANHLFIEAGQYNENLYGT 2173
E+TL++G +GLGFS+AGG D PHI +D SI+ITKII GAA +DGR++V D IL+VN+V DV HS AV+ALK+AG V+L +KR E ++ I L KG GLGF+IAGG ++H+P D+ I+VT II GGAAH DG+LQI DK+ VN+ L+ THE AV LK+T + V L V + T++ +ND +PP +T++ +P P P +P VS + L + + EPR V+L RG +GLGFNIVGGEDGEGIFISFILAGGPADLSG++++GD+I+ VN V+L A+HE+AAAALK AG VT+ Q++P+EY+RFE KIH LR++MMNS+ L+TS KR+LYVR LF+YDKTKDSGLPS GL+FKFGDILHV NASDDEWWQA ++ DGES E+GVIPSKRRVE++ERAR KTVKF +K R KG+ +KG +ASD + + E+ +LSYE V Q+E+ YTRPVIILGP+KDR+NDDLI EFP++FGSCVPHTTR R++EV GRDYHFV SRE+ME+DI H FIEAGQYN +LYGT
Sbjct: 224 EITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAGSIVRLYVKRRKPVSEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK--------------PTSMYMNDGYAPPD-ITNSSSQPVDNHVSPSSFLGQTPASPARYSP-VSKAVLGDDEI-------TREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEYSRFEAKIHDLREQMMNSSISSGSGSLRTSQKRSLYVRALFDYDKTKDSGLPSQGLNFKFGDILHVINASDDEWWQARQVTPDGESDEVGVIPSKRRVEKKERARLKTVKFN---------------------------SKTRD-KGEIPDDMGSKGLKHVTSNASDSESSYRGQEEYVLSYEPVNQQEVNYTRPVIILGPMKDRINDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGT 791 The following BLAST results are available for this feature:
BLAST of TCONS_00045808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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