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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045939 ID=TCONS_00045939|Name=TCONS_00045939|organism=Clytia hemisphaerica|type=transcript|length=1038bp
TGGACCCTGGGCTTGTCCCCCATTTCGATGTTTATTGTGGCCTCTCTGAA
AGCAAAGATATATTGTCATATATTAGGATGGATTTGCTAATGTTTGGGGG
ACAACATTCATTCTCTCTAAAAAgaccttctttttcttcaaaacacGAAC
TTGATCGGTGTATCGTCAATACGATTACTAGCCTCTTTTGGTCATCAACA
ACTTCTAACCAAAAACATTTTCGACCATTGGAAACACAAGCATTAAGATG
AAAGCCGTCCAATCAAAGTTAACTTCAATGAGAGCTAAATTGAAAGAATC
GGAGGATGCAGTTGACGTAGCAGCAGGCGAGCTTAACCAAATCATACAAA
AAGCCGAACAAATGGAAAACAAAAGAGCTGAACTTTCAACCCAATTCTTT
GAAATAGAGGATAGATTTGAAGAAGGGAAATCAGTGTTAACTGGACTCAT
GGTTAACATAGAAGAAGGCGAAAAAACCTTCGAGGAAACGATGAAAGCTT
ATAAGATTATGGAAAACAGAGTTCAAAAAGGTGCTAACAAAATAGAAGGA
TTGGAACGAGAATTAGAGATAGTGAAAGAGtcaatcaaagaaaacaaagt
aGAGCATGAAGAGAGCTTGAAAACAATAAACATGCTTGAGGAAACTTTGA
ATAATGCCGAAGAACGCAGCAATGCTGCCGATACCAGAGTCAAAGATCTC
GAAAAAGGAAACACTCTACTCAGCAGCAGTCGTAAAAAAGCATGGTAACC
AATTTATAAATGAACGAGTTCCAACTGCTTACAGACCAATGATCGGTCAA
GTTCGCTAGTTGATGAAAAAGAATGTCtttctcttaaaaaaaaatggaaa
ttttcacTCAAACATTGACTTGTTCATCTTAATACACGACACGCCATCCC
TCTTGACATAAAGAGAACCTGGAATAGATCTTTATTTCTTCTTGATCTTT
ACTACAGTGgattctctataactcgaacataACATAGCACGAAcgggaaa
cacaaatttgttcgagttagaAATTTTTTAGTTATGGA Run BLAST on NCBI protein sequence of TCONS_00045939-protein >TCONS_00045939-protein ID=TCONS_00045939-protein|Name=TCONS_00045939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MKAVQSKLTSMRAKLKESEDAVDVAAGELNQIIQKAEQMENKRAELSTQF
FEIEDRFEEGKSVLTGLMVNIEEGEKTFEETMKAYKIMENRVQKGANKIE
GLERELEIVKESIKENKVEHEESLKTINMLEETLNNAEERSNAADTRVKD
LEKGNTLLSSSRKKAW Run BLAST on NCBI transcript from alignment at scaffold_104:130420..131527+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045939 ID=TCONS_00045939|Name=TCONS_00045939|organism=Clytia hemisphaerica|type=transcript|length=1108bp|location=Sequence derived from alignment at scaffold_104:130420..131527+ (Clytia hemisphaerica)
TGGACCCTGGGCTTGTCCCCCATTTCGATGTTTATTGTGGCCTCTCTGAA
AGCAAAGATATATTGTCATATATTAGGATGGATTTGCTAATGTTTGGGGG
ACAACATTCATTCTCTCTAAAAAgaccttctttttcttcaaaacacGAAC
TTGATCGGTGTATCGTCAATACGATTACTAGCCTCTTTTGGTCATCAACA
ACTTCTAACCAAAAACATTTTCGACCATTGGAAACACAAGCATTAAGATG
AAAGCCGTCCAATCAAAGTTAACTTCAATGAGAGCTAAATTGAAAGAATC
GGAGGATGCAGTTGACGTAGCAGCAGGCGAGCTTAACCAAATCATACAAA
AAGCCGAACAAATGGAAAACAAAAGAGCTGAACTTTCAACCCAATTCTTT
GAAATAGAGGATAGATTTGAAGAAGGGAAATCAGTGTTAACTGGACTCAT
GGTTAACATAGAAGAAGGCGAAAAAACCTTCGAGGAAACGATGAAAGCTT
ATAAGATTATGGAAAACAGAGTTCAAAAAGGTGCTAACAAAATAGAAGGA
TTGGAACGAGAATTAGAGATAGTGAAAGAGtcaatcaaagaaaacaaagt
aGAGCATGAAGAGAGCTTGAAAACAATAAACATGCTTGAGGAAACATTGA
ATAATGCCGAAGAACGAAGCAGGGCTGCCGATACCAGAGTCAAAGNTAAA
CATGCTTGAGGAAACTTTGAATAATGCCGAAGAACGCAGCAATGCTGCCG
ATACCAGAGTCAAAGATCTCGAAAAAGGAAACACTCTACTCAGCAGCAGT
CGTAAAAAAGCATGGTAACCAATTTATAAATGAACGAGTTCCAACTGCTT
ACAGACCAATGATCGGTCAAGTTCGCTAGTTGATGAAAAAGAATGTCttt
ctcttaaaaaaaaatggaaattttcacTCAAACATTGACTTGTTCATCTT
AATACACGACACGCCATCCCTCTTGACATAAAGAGAACCTGGAATAGATC
TTTATTTCTTCTTGATCTTTACTACAGTGgattctctataactcgaacat
aACATAGCACGAAcgggaaacacaaatttgttcgagttagaAATTTTTTA
GTTATGGA Coding sequence (CDS) from alignment at scaffold_104:130420..131527+ >TCONS_00045939 ID=TCONS_00045939|Name=TCONS_00045939|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_104:130420..131527+ (Clytia hemisphaerica)
ATGAAAGCCGTCCAATCAAAGTTAACTTCAATGAGAGCTAAATTGAAAGA
ATCGGAGGATGCAGTTGACGTAGCAGCAGGCGAGCTTAACCAAATCATAC
AAAAAGCCGAACAAATGGAAAACAAAAGAGCTGAACTTTCAACCCAATTC
TTTGAAATAGAGGATAGATTTGAAGAAGGGAAATCAGTGTTAACTGGACT
CATGGTTAACATAGAAGAAGGCGAAAAAACCTTCGAGGAAACGATGAAAG
CTTATAAGATTATGGAAAACAGAGTTCAAAAAGGTGCTAACAAAATAGAA
GGATTGGAACGAGAATTAGAGATAGTGAAAGAGtcaatcaaagaaaacaa
agtaGAGCATGAAGAGAGCTTGAAAACAATAAACATGCTTGAGGAAACTT
TGAATAATGCCGAAGAACGCAGCAATGCTGCCGATACCAGAGTCAAAGAT
CTCGAAAAAGGAAACACTCTACTCAGCAGCAGTCGTAAAAAAGCATGGTA
AATGAAAGCCGTCCAATCAAAGTTAACTTCAATGAGAGCTAAATTGAAAG
AATCGGAGGATGCAGTTGACGTAGCAGCAGGCGAGCTTAACCAAATCATA
CAAAAAGCCGAACAAATGGAAAACAAAAGAGCTGAACTTTCAACCCAATT
CTTTGAAATAGAGGATAGATTTGAAGAAGGGAAATCAGTGTTAACTGGAC
TCATGGTTAACATAGAAGAAGGCGAAAAAACCTTCGAGGAAACGATGAAA
GCTTATAAGATTATGGAAAACAGAGTTCAAAAAGGTGCTAACAAAATAGA
AGGATTGGAACGAGAATTAGAGATAGTGAAAGAGtcaatcaaagaaaaca
aagtaGAGCATGAAGAGAGCTTGAAAACAATAAACATGCTTGAGGAAACT
TTGAATAATGCCGAAGAACGCAGCAATGCTGCCGATACCAGAGTCAAAGA
TCTCGAAAAAGGAAACACTCTACTCAGCAGCAGTCGTAAAAAAGCATGGT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045939-exon-scaffold_104-1491911889:130420..131050 | TCONS_00045939-exon-scaffold_104-1491911889:130420..131050 | Clytia hemisphaerica | exon |
| TCONS_00045939-exon-scaffold_104-1510915933:130420..131050 | TCONS_00045939-exon-scaffold_104-1510915933:130420..131050 | Clytia hemisphaerica | exon |
| TCONS_00045939-exon-scaffold_104-1575043694:130420..131050 | TCONS_00045939-exon-scaffold_104-1575043694:130420..131050 | Clytia hemisphaerica | exon |
| TCONS_00045939-exon-scaffold_104-1491911889:131121..131527 | TCONS_00045939-exon-scaffold_104-1491911889:131121..131527 | Clytia hemisphaerica | exon |
| TCONS_00045939-exon-scaffold_104-1510915933:131121..131527 | TCONS_00045939-exon-scaffold_104-1510915933:131121..131527 | Clytia hemisphaerica | exon |
| TCONS_00045939-exon-scaffold_104-1575043694:131121..131527 | TCONS_00045939-exon-scaffold_104-1575043694:131121..131527 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_104 | supercontig | scaffold_104:130420..131527 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000533 | Tropomyosin |
Blast
The following BLAST results are available for this feature:
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