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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045949 ID=TCONS_00045949|Name=TCONS_00045949|organism=Clytia hemisphaerica|type=transcript|length=7493bpRun BLAST on NCBI protein sequence of TCONS_00045949-protein >TCONS_00045949-protein ID=TCONS_00045949-protein|Name=TCONS_00045949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1694bp DVDKNGACLGKRRVEMTASFCITLLLFSLLGGIHSAITPCPEDWTLLSKSRun BLAST on NCBI transcript from alignment at scaffold_104:277285..299278+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045949 ID=TCONS_00045949|Name=TCONS_00045949|organism=Clytia hemisphaerica|type=transcript|length=21994bp|location=Sequence derived from alignment at scaffold_104:277285..299278+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_104:277285..299278+ >TCONS_00045949 ID=TCONS_00045949|Name=TCONS_00045949|organism=Clytia hemisphaerica|type=CDS|length=61020bp|location=Sequence derived from alignment at scaffold_104:277285..299278+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045949 vs. Swiss-Prot (Human)
Match: ANPRB (Atrial natriuretic peptide receptor 2 OS=Homo sapiens GN=NPR2 PE=1 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 3.018e-49 Identity = 165/641 (25.74%), Postives = 278/641 (43.37%), Query Frame = 1
Query: 3205 IAAGIGTTVCGVFLMLYIVRLIQTQEQNAVAEIEASEKDYTMKWNDLETFEEVDYTSKVVGKQINHKLLYTTYKKGLT-------------FTGQQVFIKCIEKPHFQITLGVKNEIQQLCQLSHNNIEQLLGIIVSQSRVGVVTPNANMGSLYDVLHAKNIWLTWDVRYSMMQDICRGMTYLHDIAKIKHGRLKSTNCLVYKGWQTKVGDIGLKMVXXXXXXXXXXXXXDSFKLKSM-DDSEKDYRSLLWTAPELTCSGATNLDQVIRFTNKADVYSFGIILSEIISRRPP-YSEISVMSIEHIVQAVAHLREPIVSLDQMNPGQETTGKDVLKTAVHGTLLRPKVDSSFFPADESESSILKMLMESCWSESEVERPPFAYALEVLELITPLKGSPLLKRAIL-LERETESLEKYICHDTNQIFKEQDKIADLLARMLPPFLATKFLSGDPMTPTQHNNVTVLIVRVHDLDRMVTLSSPTQLVDIISYLWKTVHVIIKKRKLKINYIKNRGDTLLFGAGFDS-NSNRHAYDVTMLATQLLKTARSLEITNCPAHSVTLQAGIYTGPCTSAVITTSGTANHTLIGEAIDTARILERDALPNCVHASKKTTHYLSN-NEFDIVSRTTYRLRVEKQILRTFWV 5073
+A G G T F+M + + ++ + E E + + ++W +L+ F + K G ++ L ++Y +T F G V IK + K ++T V E++ + + N++ + +G + + +VT GSL D+L +I L W RYS++ D+ +GM +LH+ HG LKS+NC+V + K+ D GL SF+ + DDS Y LWTAPEL + KADVYSFGIIL EI R P Y E +S + IVQ V + + P RP +D + + L +LME CW++ ERP F + G+ +L +L +E+ +LEK + T +E+ K LL ++LP +A + G+ + ++VT+ + + S+P Q+V +++ L+ II + ++ GD + +G N RHA ++ +A LL S I + P + L+ G++TGP + V+ + L G+ ++TA +E + +H S T L F + R ++ K +RT+W+
Sbjct: 459 VALGTGIT----FIMFGVSSFLIFRK--LMLEKELASMLWRIRWEELQ-FGNSERYHKGAGSRLTLSLRGSSYGSLMTAHGKYQIFANTGHFKGNVVAIKHVNKKRIELTRQVLFELKHMRDVQFNHLTRFIGACIDPPNICIVTEYCPRGSLQDILENDSINLDWMFRYSLINDLVKGMAFLHNSIISSHGSLKSSNCVVDSRFVLKITDYGLA----------------SFRSTAEPDDSHALYAKKLWTAPELLSGNPLPTTGM----QKADVYSFGIILQEIALRSGPFYLEGLDLSPKEIVQKVRNGQRPY--------------------------FRPSIDRTQLNEE------LVLLMERCWAQDPAERPDFGQIKGFIRRFNKEGGTSILDNLLLRMEQYANNLEKLVEERTQAYLEEKRKAEALLYQILPHSVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAIIDN--FDVYKVETIGDAYMVVSGLPGRNGQRHAPEIARMALALLDAVSSFRIRHRPHDQLRLRIGVHTGPVCAGVVGLK-MPRYCLFGDTVNTASRMESNGQALKIHVSSTTKDALDELGCFQLELRGDVEMK-GKGKMRTYWL 1036 The following BLAST results are available for this feature:
BLAST of TCONS_00045949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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