TCONS_00046021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046021
Unique NameTCONS_00046021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046021 ID=TCONS_00046021|Name=TCONS_00046021|organism=Clytia hemisphaerica|type=transcript|length=674bp
TGCAAACGTGGTtgataaagacacgaacgtggttgataaagacacgaacg
tggttgataaagacacgaacgtggttgataaagacacgaacgtGGTTGAT
AAAGACACGAACGAGGTCGAGAAGAACGCAAACGTGGTTGATAAAGACAC
GAACGAGGTCGAGAAGAACTCAAACGTGGTtgataaagacacgaacgtgg
ttaataaagacacgaacgtggttgataaagacacgaacgtGGTTGATAAA
GACACGAACGAGACGGAGAAAGACGAAGAGGACGTTCATTTTGACATATC
GGAAAAGGACACATCTGATGCAGAGAGTATAATATTTCAGCCTCTGAAAG
ACACTCCAAAAGAGACAACAATTCCAACAACAACGCAAGTATCAGATGTT
ACAATCGAAGATACTGATGAGGAGAACAGTAGAGATGATCCCTCTATTGA
AAAAGAAGACGATGATGCTCTTGCTGATAATGCTAAATGTTTCGCTAATT
TGAGACGTTCTGTACGTACTATCAGAAGGAAAGATTATCAGGGGATGGAT
TCCGAAGAAAGTCCTTTGGGAGATTTGAATGATCCTGACTTCTTACTAGA
CTTCGACGACGAACCAGAAGAGATTGCTGATCCTGACGCTGCCTTGGAAA
AGGCTATTGCAAAGATGAATGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_105:46822..50124-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046021 ID=TCONS_00046021|Name=TCONS_00046021|organism=Clytia hemisphaerica|type=transcript|length=3303bp|location=Sequence derived from alignment at scaffold_105:46822..50124- (Clytia hemisphaerica)
TGCAAACGTGGTTGATAAAGACACGAACGTGGTTGATAAAGACACGAACG
TGGTTGATAAAGACACGAACGTGGTTGATAAAGACACGAACGTGGTTGAT
AAAGACACGAACGAGGTCGAGAAGAACGCAAACGTGGTTGATAAAGACAC
GAACGAGGTCGAGAAGAACTCAAACGTGGTTGATAAAGACACGAACGTGG
TTAATAAAGACACGAACGTGGTTGATAAAGACACGAACGTGGTTGATAAA
GACACGAACGAGGTCGAGAAGAACGCAAACGTGGTTGATAAAGACACGAA
CGTGGTTGAGAAGAACGCAAACGTGGTTGATAAAGACACGAACGAGGTCG
AGAAGAACGCAAACGTGGTTGATAAAGACACGAACGTGGTTGATAAAGAC
ACGAACGTGGTTGATAAAGACACGAACGAGGTCGAGAAGAACACGAACGA
GGTCGAGAAGAACACGAACGAGGTCGAGGTAAAGAAGAACGAACGAGGTG
GAAAATGGCGCGAACCAGATGAATAATAATGTGAAAGAGATGTGTAAAGA
CGCTGGCGAGATGGAGAAAGGTGCAAACGAGATGAAAAAAAACACATACA
TGGCCGAGAAGAACACGAACGAGACGGAGAAAGACGAAGAGGACGTTCAT
TTTGACATATCGGAAAAGGTGAATTAGTCAAACTATTTGACTGTCATTGA
TGACTTTGGGCTTTGATAACTTTGAATTTTTGACTTTTCGTAGGTTAGAA
TTCCAACACTGAACAGCAAAATTAAATGACACGAAAATTTCTATTTAGTC
CTTAATGTTAGTCCTAAATTCTAAGCAGTAAAAAAATTATCATCGTAGGA
CACATCTGATGCAGAGAGTATAATATTTCAGCCTCTGAAAGACACTCCAA
AAGAGGTATGTCACAAATTTTCTAATTAGACGTCTAAACTCGCATTTTGT
TAATATTATTGCTATAATTGAATTTCAGTAACGTCATGTTAACTTTCGTG
TTATTTTTTGTTCCTGCAGTGTTCAAAGAGTGGGTCAGGGTAGACATGAC
GTGACTGTCCAAAAGTTCAGTCATTATTATTCCATGGATTTGGTACTTAA
AGTTCCATGCCGTACTCATAGACGACGCTTAATGATATTCAATTTACAAA
ATTCTTGTGTAGTACCGTATGACTCAAAAAAGAAGGTAAAAGCTTGAATG
TGCAGTACACTCAGTATAATGTTAATTTGCCGGAAAATTGTTTTTCATCG
TAAAAAGGAAGGGTATCAATTTCAAGCATTTCGGTCAGCTTCGGCGACTA
TCTCAGTTCGTTTGTTCAACAAGTTTGTATCAAGGGGTAAAAATAATTTT
TACATAGTTATTTAAATTGATTTGAATTTAGACAACAATTCCAACAACAA
CGCAAGTATCAGATGTTACAATCGAAGATACTGATGAGGAGAACAGTAGA
GATGATCCCTCTATTGAAAAAGAAGACGATGATGCTCTTGCTGATAATGG
TACAGCGATAAACAGTACTAACTCGACTCTAGATAGCTCAGAAGAACCCC
AGCCTTGAAACTGAAATGCAACCAAAAGTACCTGAGAATGATGAAACATC
TTGACATTCTTTTGAAAAGCCTTTTTAACCTGAACCCAAAATTGGGATTT
CTCATAGAAATGTGTCGTGAATTTGCTAATAATCCTATCAACTTTTCTTT
CTCTTCGTGAAAATGTCGTGAGATTAAAACAGAACCTTTTGGTAACATAT
ACTTGAAATCTTGAAATTTACTTTCAATATTCAATATTTCAGCTAAATGT
TTCGCTAATTTGAGACGTTCTGTACGTACTATCAGAAGGAAAGATTATCA
GGGGATGGATTCCGAAGAAAGTCCTTTGGGAGATTTGAATGATCCTGACT
TCTTACTAGGTACATTTCTACATTTTCCTTTTCTATTACCGAAGTTCTCA
GTCTCCTTCAAGCTTGAAATTATGATCGATTCTCCCTTAAAAGTGCCAAA
CGCGTCATTTTCCAATTGTCTTTTACAATGTAGGAGGTTTAGCATCAAAA
AACTGCAAATTATCCTCAAGCTGTGAAATTTTGCACAATTTATTTTCATT
GAATTTGGAAAATTTTGACCGGGAGATTCAAAATAAAAGAAAAAAGGTCG
TTTATGAGCCTTGGCAACTAATCCAATGGTTCCCATAGTTACCATGAAAA
CAAGAGAGGGTTTTAACAGATTTAAAAATCTGATTAAACCATCGAAAATA
ACACAAAATTCTGATGACTTATATATTGTACATTTCTTGATGATTTTCCA
ACTTAATTAACTCCTTAAGGGAAGAAATTTTCGCGGAACAAAATTTCGCG
GTTTTTCGGCAAAATTTCTTCCCTTAAGGTAGTCTATAAGGGTTAAAAAT
TTGTTGGTGACAGGTTGAAATTTCCAAATTCAATGAAGATAACTTGTTTT
AATTTTTGGCCCGACAGTGTCATTTTGCGCCAGACGCGAAGCGGGGGGCG
CAAATAACATTCAAAGCTGACCTTCTTCAGCTCTTGTACCACTTTTTTCT
TCGATGATTAATTCCTCAAAAATAATCAGTTTCTTTTCACTTTTTGGCAC
TCGAAAGGGTTTTTGTTACGAACTTTTTGTTGATACTAACTTTTTTCCAA
TACCAACTTTTTTTATCGATACCAGTTTTTTTTAACGAGGCGCAGAACTT
GAGTTAAAAAACTTGGAAAACTTTGAGTTAACAATTTTCGCCTTAGCTAA
ATTATGATGTCTTTATGTGCAAATTATGACGCCACTCCATTATTAAATTC
TAAAGGCTTTTTTGTAAGATTGATAGAATATAATGCTAATAAGAATATCA
GATTGAAAATTTAAGGGGAACTTCTTAAGAATACCGTGAGGGTGATATTG
AAATTGACATATAATAACTTTCCGTAATTCTTCTCTATAATTCGAAGAAA
ATATTTGATCTCTTGAAGATCGAATTAGAGAAAGTCGACTCTGGCTAATT
CAATAAACCTTTTTGTGAAAACAAGTCGAGTTAGAGTCCCCCCATCTAAC
AAAAGTGTGATTTTTTTATCAAATCCTTTTGCTACTACTAGCTTTAATTC
TTACGCATTTAAGACTTTAATATAAAAGAATCTCTCTCTCTTTCTCTCTT
TCTGTTAAATTAAATCCGCCCTAAAACAAAATCGTTCAAGGTAGCTTCAG
TAAAAACATACAACATATCTTTCCGCAGACTTCGACGACGAACCAGAAGA
GATTGCTGATCCTGACGCTGCCTTGGAAAAGGCTATTGCAAAGATGAATG
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029409XLOC_029409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046021-exon-scaffold_105-1575043694:49863..50124TCONS_00046021-exon-scaffold_105-1575043694:49863..50124Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1575043694:49457..49501TCONS_00046021-exon-scaffold_105-1575043694:49457..49501Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1575043694:49220..49276TCONS_00046021-exon-scaffold_105-1575043694:49220..49276Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1575043694:48626..48743TCONS_00046021-exon-scaffold_105-1575043694:48626..48743Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1575043694:48216..48332TCONS_00046021-exon-scaffold_105-1575043694:48216..48332Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1575043694:46822..46896TCONS_00046021-exon-scaffold_105-1575043694:46822..46896Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1510915933:49863..50124TCONS_00046021-exon-scaffold_105-1510915933:49863..50124Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1510915933:49457..49501TCONS_00046021-exon-scaffold_105-1510915933:49457..49501Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1510915933:49220..49276TCONS_00046021-exon-scaffold_105-1510915933:49220..49276Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1510915933:48626..48743TCONS_00046021-exon-scaffold_105-1510915933:48626..48743Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1510915933:48216..48332TCONS_00046021-exon-scaffold_105-1510915933:48216..48332Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1510915933:46822..46896TCONS_00046021-exon-scaffold_105-1510915933:46822..46896Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1491911889:49863..50124TCONS_00046021-exon-scaffold_105-1491911889:49863..50124Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1491911889:49457..49501TCONS_00046021-exon-scaffold_105-1491911889:49457..49501Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1491911889:49220..49276TCONS_00046021-exon-scaffold_105-1491911889:49220..49276Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1491911889:48626..48743TCONS_00046021-exon-scaffold_105-1491911889:48626..48743Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1491911889:48216..48332TCONS_00046021-exon-scaffold_105-1491911889:48216..48332Clytia hemisphaericaexon
TCONS_00046021-exon-scaffold_105-1491911889:46822..46896TCONS_00046021-exon-scaffold_105-1491911889:46822..46896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:46822..50124 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.23586	0.496058	0.198731	0	0	0	0	0	0	1.47017	6.02031e-07	0	0.567176	0	0.561517	0.0218142	0.510658	0.887639	0	0	0.420584	0	0.310519	0	0	0	0.0106769	0.258803	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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