TCONS_00046086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046086
Unique NameTCONS_00046086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046086 ID=TCONS_00046086|Name=TCONS_00046086|organism=Clytia hemisphaerica|type=transcript|length=430bp
TTACAGAGGAAGAACGACATGACTTTGTGATTAAGCTGTTTGATGTTGCT
ACATCACCTTCAAAAGTTCGTTATTTTAATGCTGTACTTGATGATGGGAA
TTCGGAACATCCTATTGTTTGTTACAAACCAGAACTTCATGCGAAATTCC
AATCTGCTAAGCTCAAAGATCATCCAATCAAGGTCTCCAACTTTACAGAG
ATGCACGATGAATACCGTAATGCTGTTACATATAAACTTGGTCACAGTGC
TTGTGTTGAATTGTCTACTAAAGACTTGTCTTTTAATCAAGTTAAGCCAA
AAGTACAGGCTGTAAATGCGTTCACCAAACTGCAAGAAATCAATGAGAAA
CCAGAAGAAAGTGTCGTTAATGTACAATGCCACGTCAGTGTTGTTTGTGA
AGCTCAAGAGATTGACACACGCTTTGGACG
Run BLAST on NCBI

protein sequence of TCONS_00046086-protein

>TCONS_00046086-protein ID=TCONS_00046086-protein|Name=TCONS_00046086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
TEEERHDFVIKLFDVATSPSKVRYFNAVLDDGNSEHPIVCYKPELHAKFQ
SAKLKDHPIKVSNFTEMHDEYRNAVTYKLGHSACVELSTKDLSFNQVKPK
VQAVNAFTKLQEINEKPEESVVNVQCHVSVVCEAQEIDTRFG
Run BLAST on NCBI

transcript from alignment at scaffold_105:812030..812545-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046086 ID=TCONS_00046086|Name=TCONS_00046086|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at scaffold_105:812030..812545- (Clytia hemisphaerica)
TTACAGAGGAAGAACGACATGACTTTGTGATTAAGCTGTTTGATGTTGCT
ACATCACCTTCAAAAGTTCGTTATTTTAATGCTGTACTTGATGATGGGAA
TTCGGAACATCCTATTGTTTGTTACAAACCAGAACTTCATGCGAAATTCC
AATCTGCTAAGCTCAAAGATCATCCAATCAAGGTCTCCAACTTTACAGAG
ATGCACGATGAATACCGTAATGCTGTTACATATAAACTTGGTCACAGTGC
TTGTGTTGAATTGTCTACTAAAGACTTGTCTTTTAATCAAGTTAAGCCAA
AAGTACAGGCTGTAAATGCGTTCACCAAACTGCAAGAAATCAATGAGAAA
CCAGAAGAAAGTGTCGTTAATGTACAATGCCACGTCAGTGTTGTTTGTGA
AGCTCAAGAGGTTTGTTTCTTTAATCTTCTATATTAAATACCCTACTATG
CAGTTCCGGTCCTCATTTCATTAGATTGCTGTCCTCATTTCATTAGATTG
ACACACGCTTTGGACG

Coding sequence (CDS) from alignment at scaffold_105:812030..812545-

>TCONS_00046086 ID=TCONS_00046086|Name=TCONS_00046086|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_105:812030..812545- (Clytia hemisphaerica)
ATTGACACACGCTTTGGAACAGAGGAAGAACGACATGACTTTGTGATTAA
GCTGTTTGATGTTGCTACATCACCTTCAAAAGTTCGTTATTTTAATGCTG
TACTTGATGATGGGAATTCGGAACATCCTATTGTTTGTTACAAACCAGAA
CTTCATGCGAAATTCCAATCTGCTAAGCTCAAAGATCATCCAATCAAGGT
CTCCAACTTTACAGAGATGCACGATGAATACCGTAATGCTGTTACATATA
AACTTGGTCACAGTGCTTGTGTTGAATTGTCTACTAAAGACTTGTCTTTT
AATCAAGTTAAGCCAAAAGTACAGGCTGTAAATGCGTTCACCAAACTGCA
AGAAATCAATGAGAAACCAGAAGAAAGTGTCGTTAATGTACAATGCCACG
TCAGTGTTGTTTGTGAAGCTCAAGAGATTGACACACGCTTTGGAACAGAG
GAAGAACGACATGACTTTGTGATTAAGCTGTTTGATGTTGCTACATCACC
TTCAAAAGTTCGTTATTTTAATGCTGTACTTGATGATGGGAATTCGGAAC
ATCCTATTGTTTGTTACAAACCAGAACTTCATGCGAAATTCCAATCTGCT
AAGCTCAAAGATCATCCAATCAAGGTCTCCAACTTTACAGAGATGCACGA
TGAATACCGTAATGCTGTTACATATAAACTTGGTCACAGTGCTTGTGTTG
AATTGTCTACTAAAGACTTGTCTTTTAATCAAGTTAAGCCAAAAGTACAG
GCTGTAAATGCGTTCACCAAACTGCAAGAAATCAATGAGAAACCAGAAGA
AAGTGTCGTTAATGTACAATGCCACGTCAGTGTTGTTTGTGAAGCTCAAG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029430XLOC_029430Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046086-proteinTCONS_00046086-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046086-exon-scaffold_105-1575043694:812136..812545TCONS_00046086-exon-scaffold_105-1575043694:812136..812545Clytia hemisphaericaexon
TCONS_00046086-exon-scaffold_105-1575043694:812030..812049TCONS_00046086-exon-scaffold_105-1575043694:812030..812049Clytia hemisphaericaexon
TCONS_00046086-exon-scaffold_105-1510915933:812136..812545TCONS_00046086-exon-scaffold_105-1510915933:812136..812545Clytia hemisphaericaexon
TCONS_00046086-exon-scaffold_105-1510915933:812030..812049TCONS_00046086-exon-scaffold_105-1510915933:812030..812049Clytia hemisphaericaexon
TCONS_00046086-exon-scaffold_105-1491911889:812136..812545TCONS_00046086-exon-scaffold_105-1491911889:812136..812545Clytia hemisphaericaexon
TCONS_00046086-exon-scaffold_105-1491911889:812030..812049TCONS_00046086-exon-scaffold_105-1491911889:812030..812049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:812030..812545 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.181763	0	0	0	0.20639	0.19322	0.405834	0.167563	0	0.320742	0.533827	1.21965	1.6408	0.489121	0.120511	0.24704	0.51195	0.357146	0	0	0.184064	0	0	0.153824	0	0	0.178179	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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