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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046219 ID=TCONS_00046219|Name=TCONS_00046219|organism=Clytia hemisphaerica|type=transcript|length=1439bp
TATATAAACAATATTCAAAAGCCTGCCTATACCTTAGCTTTTAGATTTCT
CATTGATTTCCTATTACAATAACGATAGCTTGCTTTTATTTAGGTCTTTT
TAATAAAGATTAAatacaaaataataaattatgGCTGACAATTTTCGTAT
GCTTTATTATGATACTCTTGGGTTAAAAAATGTTGACCAAAAGAAGACAT
TGGAACTGTTGTTAAGTGAAAACCCTTTGAGCACAGATaagttgaaacat
ttttctcaTAAATTCACATTACCAGCAATCTATCGTTCACTTGTTTGGAA
AGTTCAACTTGGTATATCCCCAACATGTAAAGAATCAAGCGAGTTTGTGA
ATACACAAAGACAAGGTCATTATGAAGATTTGAAGCAAGCTTTAATAACA
ATGCAAATGTTAAATGACCATGGGGAAACAAACAGGAGTAACTTGAACCC
AAGAGACATTGTTTTGATGTATTTATTAGATTTTGGGCAGCTTAGTGTTT
TACatggaaatattttaaaacGTGATGGTCACAAAGTATTTGTGTTAGAA
TCAATAAGTCAAGCTGTATGTGGAGTTGTATCTGATGAATGTGATTGCTT
TTGGATTACAAAACATTTATATAATCGACAAGAACAGCTTTATGAAAGTT
TTAGTAAACTTCCACAATATGTGAAATACTATTCACAATTAGAAGATCAA
CGATTATTTGAACACTTGTGCGAAATTCAGTTGTTCAAAGTGCTCCCGTA
TGACCGTTggtttcaaacatattttgcaTCTGTTTTTGCAGATTGCTTGG
AGTATTTAGAAAGAATTCTTGATAAAATAGTGGCAGGATCATGTAACATT
TTACTTTTTGTATGCGTAGCTTTGTTATTaacattttccttgaaattaAA
GCAGGTGCGTTCATCTGAAGAAGCTTTAAAAATGATAAGCCACCTGCAAG
AAGAAGCTGGTTTAGCGGTAGTTGACAAGACAATGGAACTGTGGGAACAA
CATCGCAATTCTCTGTGTGCAGAAATTGGTTGTCATAATCATGACCATTA
AAACTACAAAATCTCTTCTTGCTTGATAACCTTTGATAAGGAAAAAACAT
TATTCTAATGTTAATCTGACGTCATGAAGGTGCAAAATATTGAGCATAAA
ACTTAATATGGGCATTCATGTCTGGTAGAAGGAAGAAAAGAACACTTAGG
CATCCCtaggatttcaaaaaaatttagttttgtAGCTTTACAATTTTTAC
TGTCTCAAACATTTAAGGAACTGGTTTTAGGTTCATAATctttaaattga
aattcaagGACCGCTTTGAAATACcaatattattttttatcaaaattcag
tttttaTTATTagattgtgaaaaattattttcattatttaaatTTAATTA
TAAATACTTCATTGACATTTCCATTTTATTTCATCAAAC Run BLAST on NCBI protein sequence of TCONS_00046219-protein >TCONS_00046219-protein ID=TCONS_00046219-protein|Name=TCONS_00046219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MADNFRMLYYDTLGLKNVDQKKTLELLLSENPLSTDKLKHFSHKFTLPAI
YRSLVWKVQLGISPTCKESSEFVNTQRQGHYEDLKQALITMQMLNDHGET
NRSNLNPRDIVLMYLLDFGQLSVLHGNILKRDGHKVFVLESISQAVCGVV
SDECDCFWITKHLYNRQEQLYESFSKLPQYVKYYSQLEDQRLFEHLCEIQ
LFKVLPYDRWFQTYFASVFADCLEYLERILDKIVAGSCNILLFVCVALLL
TFSLKLKQVRSSEEALKMISHLQEEAGLAVVDKTMELWEQHRNSLCAEIG
CHNHDH Run BLAST on NCBI transcript from alignment at scaffold_106:235241..236679 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046219 ID=TCONS_00046219|Name=TCONS_00046219|organism=Clytia hemisphaerica|type=transcript|length=1439bp|location=Sequence derived from alignment at scaffold_106:235241..236679 (Clytia hemisphaerica)
GTTTGATGAAATAAAATGGAAATGTCAATGAAGTATTTATAATTAAattt
aaataatgaaaataatttttcacaatctAATAAtaaaaactgaattttga
taaaaaataatattgGTATTTCAAAGCGGTCcttgaatttcaatttaaag
ATTATGAACCTAAAACCAGTTCCTTAAATGTTTGAGACAGTAAAAATTGT
AAAGCTacaaaactaaatttttttgaaatcctaGGGATGCCTAAGTGTTC
TTTTCTTCCTTCTACCAGACATGAATGCCCATATTAAGTTTTATGCTCAA
TATTTTGCACCTTCATGACGTCAGATTAACATTAGAATAATGTTTTTTCC
TTATCAAAGGTTATCAAGCAAGAAGAGATTTTGTAGTTTTAATGGTCATG
ATTATGACAACCAATTTCTGCACACAGAGAATTGCGATGTTGTTCCCACA
GTTCCATTGTCTTGTCAACTACCGCTAAACCAGCTTCTTCTTGCAGGTGG
CTTATCATTTTTAAAGCTTCTTCAGATGAACGCACCTGCTTtaatttcaa
ggaaaatgttAATAACAAAGCTACGCATACAAAAAGTAAAATGTTACATG
ATCCTGCCACTATTTTATCAAGAATTCTTTCTAAATACTCCAAGCAATCT
GCAAAAACAGAtgcaaaatatgtttgaaaccAACGGTCATACGGGAGCAC
TTTGAACAACTGAATTTCGCACAAGTGTTCAAATAATCGTTGATCTTCTA
ATTGTGAATAGTATTTCACATATTGTGGAAGTTTACTAAAACTTTCATAA
AGCTGTTCTTGTCGATTATATAAATGTTTTGTAATCCAAAAGCAATCACA
TTCATCAGATACAACTCCACATACAGCTTGACTTATTGATTCTAACACAA
ATACTTTGTGACCATCACgttttaaaatatttccatGTAAAACACTAAGC
TGCCCAAAATCTAATAAATACATCAAAACAATGTCTCTTGGGTTCAAGTT
ACTCCTGTTTGTTTCCCCATGGTCATTTAACATTTGCATTGTTATTAAAG
CTTGCTTCAAATCTTCATAATGACCTTGTCTTTGTGTATTCACAAACTCG
CTTGATTCTTTACATGTTGGGGATATACCAAGTTGAACTTTCCAAACAAG
TGAACGATAGATTGCTGGTAATGTGAATTTAtgagaaaaatgtttcaact
tATCTGTGCTCAAAGGGTTTTCACTTAACAACAGTTCCAATGTCTTCTTT
TGGTCAACATTTTTTAACCCAAGAGTATCATAATAAAGCATACGAAAATT
GTCAGCcataatttattattttgtatTTAATCTTTATTAAAAAGACCTAA
ATAAAAGCAAGCTATCGTTATTGTAATAGGAAATCAATGAGAAATCTAAA
AGCTAAGGTATAGGCAGGCTTTTGAATATTGTTTATATA Coding sequence (CDS) from alignment at scaffold_106:235241..236679 >TCONS_00046219 ID=TCONS_00046219|Name=TCONS_00046219|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at scaffold_106:235241..236679 (Clytia hemisphaerica)
TTAATGGTCATGATTATGACAACCAATTTCTGCACACAGAGAATTGCGAT
GTTGTTCCCACAGTTCCATTGTCTTGTCAACTACCGCTAAACCAGCTTCT
TCTTGCAGGTGGCTTATCATTTTTAAAGCTTCTTCAGATGAACGCACCTG
CTTtaatttcaaggaaaatgttAATAACAAAGCTACGCATACAAAAAGTA
AAATGTTACATGATCCTGCCACTATTTTATCAAGAATTCTTTCTAAATAC
TCCAAGCAATCTGCAAAAACAGAtgcaaaatatgtttgaaaccAACGGTC
ATACGGGAGCACTTTGAACAACTGAATTTCGCACAAGTGTTCAAATAATC
GTTGATCTTCTAATTGTGAATAGTATTTCACATATTGTGGAAGTTTACTA
AAACTTTCATAAAGCTGTTCTTGTCGATTATATAAATGTTTTGTAATCCA
AAAGCAATCACATTCATCAGATACAACTCCACATACAGCTTGACTTATTG
ATTCTAACACAAATACTTTGTGACCATCACgttttaaaatatttccatGT
AAAACACTAAGCTGCCCAAAATCTAATAAATACATCAAAACAATGTCTCT
TGGGTTCAAGTTACTCCTGTTTGTTTCCCCATGGTCATTTAACATTTGCA
TTGTTATTAAAGCTTGCTTCAAATCTTCATAATGACCTTGTCTTTGTGTA
TTCACAAACTCGCTTGATTCTTTACATGTTGGGGATATACCAAGTTGAAC
TTTCCAAACAAGTGAACGATAGATTGCTGGTAATGTGAATTTAtgagaaa
aatgtttcaacttATCTGTGCTCAAAGGGTTTTCACTTAACAACAGTTCC
AATGTCTTCTTTTGGTCAACATTTTTTAACCCAAGAGTATCATAATAAAG
CATACGAAAATTGTCAGCcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046219-exon-scaffold_106-1491911889:235241..236679 | TCONS_00046219-exon-scaffold_106-1491911889:235241..236679 | Clytia hemisphaerica | exon |
| TCONS_00046219-exon-scaffold_106-1510915933:235241..236679 | TCONS_00046219-exon-scaffold_106-1510915933:235241..236679 | Clytia hemisphaerica | exon |
| TCONS_00046219-exon-scaffold_106-1575043694:235241..236679 | TCONS_00046219-exon-scaffold_106-1575043694:235241..236679 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:235241..236679 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000195 | Rab-GTPase-TBC_dom |
Blast
BLAST of TCONS_00046219 vs. Swiss-Prot (Human)
Match: TBCD7 (TBC1 domain family member 7 OS=Homo sapiens GN=TBC1D7 PE=1 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.202e-55 Identity = 108/289 (37.37%), Postives = 167/289 (57.79%), Query Frame = 2
Query: 140 NFRMLYYDTLGLKNVDQKKTLELLLSENPLSTDKLKHFSHKFTLPAIYRSLVWKVQLGISPTCKESSEFVNTQRQGHYEDLKQALITMQMLNDHGETNRSNLNPRDIVLMYLLDFGQLSVLHGNILKRDGHKVFVLESISQAVCGVVSDECDCFWITKHLYNRQEQLY-ESFSKLPQYVKYYSQLEDQRLFEHLCEIQLFKVLPYDRWFQTYFASVFADCLEYLERILDKIVAGSCNILLFVCVALLLTFSLKLKQVRSSEEALKMISHLQEEAGLAVVDKTMELWEQH 1003
NFR +YY+ +G + V++KK+LE+LL ++ L T+KL FS +F LP++YR+LVWKV LGI P ES V R+ Y D+ AL ++ ++D L MY L+ G+L L+ D V +I++A+ +V D DC+WIT+ N+ Y +S +LP+ + Y LED RL HL LPYD WF+ FA + L+R+ DK+V+GSC IL+FV V +LLTF +K+ + S+E+ K + ++ +++ A+V K ++LW +H
Sbjct: 8 NFRSVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLR------MYQLESGKLPRSPSFPLEPDDE---VFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPE--SSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKH 285
The following BLAST results are available for this feature:
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