TCONS_00046259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046259
Unique NameTCONS_00046259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046259 ID=TCONS_00046259|Name=TCONS_00046259|organism=Clytia hemisphaerica|type=transcript|length=366bp
GTCAtagttataaaaacaaaaaactaaacaatttaacaacaaaaaaagga
aacaaacaaGATGGTTTTGGATTACGACAACAAGTTAATTCTTGCACCAA
TGGTTCGAATCGGGACATTACCAATGAGATTGCTTGCTCTTCGATATGGT
GCTGATATCGTATATTCTGAGgAGATCATTGACCACAAGTTAATTTATTG
TACTCGCGTCGAAAATAaaCTGTTAGGGACGGTAGATTTCGTTGCTTCCG
ATGGTACTATTCTTTTTCGAACGTGCCAGGAAGAAAAGGAAAGAGTCATT
TTTCAAATGGGAACTTGTGATCCTGAACGAGCTTTGAAAGTTGCAAAGAT
GGTGTAAGATCATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_108:473083..474892+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046259 ID=TCONS_00046259|Name=TCONS_00046259|organism=Clytia hemisphaerica|type=transcript|length=1810bp|location=Sequence derived from alignment at scaffold_108:473083..474892+ (Clytia hemisphaerica)
GTCAtagttataaaaacaaaaaactaaacaatttaacaacaaaaaaagga
aacaaacaaGATGGTTTTGGATTACGACAACAAGTTAATTCTTGCACCAA
TGGTTCGAATCGGGACATTACCAATGAGATTGCTTGCTCTTCGATATGGT
GCTGATATCGTATATTCTGAGGTTGATTTTTTGTATCTCTTCATCGATTA
ttgtaattcatgatatgcaccactgcaatttcttttaactcgaacctcta
taacccGAACAAGCTTCATGGCCCCTTctgttaacaatgccttataaacc
ttactccataaaaTTTCTTTGACTTGAACAAATTTTAGATTCTCGTGTGT
TATTGAGACTCCACTGAACTTACCAATTTGAGTAGAACCTGGTAGAACCA
AACCTCTCTAAGGGCCCCCCGAGAAAGTGTTCTCTGTTAAAGTCACGATT
TTATGTTTTCTTCGGACTGGACTTGACCCTTGCGAAAACTATCGTCTCCA
GATCGGCAAAATAAATATGTCCCATGTTTGTATTCTCCATtaattattgt
ttatttttcaggAGATCATTGACCACAAGTTAATTTATTGTACTCGCGTC
GAAAATAGTAAGAAATTGTAATTTTCATTACATTTGTATGTTAAACCCTT
ACCGGAAATTAAATAATCCCGACAAAGAGATGTCATTTGGGAAAAAGGAT
TCcgcaaaaaaacaacataaatcAAACCTTACTCTGCGAAAAAAACAGTC
GCGCAAAGATTTTGATTGTATTGTTATGTAATGTTCCCCAGCCTTATATG
ATTTACACAAAGCCcttcaaaaagttgattttagtttcttttcattttct
agaaCTGTTAGGGACGGTAGATTTCGTTGCTTCCGATGGTACTATTCTTT
TTCGAACGTGCCAGGAAGAAAAGGAAAGAGTCATTTTTCAAATGGTAAGC
ATAAACACGCGTTTAACATGTTACAggggagtctccataactcgaacacg
cacgggaaccacaaatttgttcgagtgtGAGGACGTATTTCGGGTTGTGG
AGTAAggcttataaggcattgttaactttttcgagttacggAGACCTTAA
CTTTATAGAGATTCGAGTTAAAAAGGCAACACTGAATTGAGCGAAATCTG
TGGCTTTTCAtcttttattataagaaaaattccAAGAAGATGGCAGCCag
attttcttaaatttccCTCATACGAAAAGAACATGATTGAGATTATGAAG
TGCGTTTTGTACGCGAAAGAACGGTTATCAATCACGTATTAAAGGTTGAA
TTTGTTCATTCCCTACAATCgtggtcaaaatctattgagaatgtagctta
tttcctcgtttttcgaaatttggagttccggctagaaagtcgcttttggg
ctcaTTGATAGATTTATTCAAGTATTTCAATTCGGTAGGGATTTATAGAC
TTCAAGGCTaaattctgagccctattggaccattcttgaacttttggacc
CTTAGATTCTAAGCTCCTATACCTTAAGTCTAGCgtaaaaactcagagtt
aaaactctatccttccaacctaatttagagcgcctCCAAATCGTTTGTAG
TTATAAGATTTCttaggaatttcccttttttctcaaatattacgaccatg
attgtatgtATCACTGTCACTTAGATTCCAGTAAACCAATCAGAAAATAT
GCCTTTTTAGCAGACTTCTAGATAATGCAAAGTTGCTATTTTTTATCTAC
TAGGGAACTTGTGATCCTGAACGAGCTTTGAAAGTTGCAAAGATGGTGTA
AGATCATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029545XLOC_029545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046259-exon-scaffold_108-1491911889:473083..473253TCONS_00046259-exon-scaffold_108-1491911889:473083..473253Clytia hemisphaericaexon
TCONS_00046259-exon-scaffold_108-1510915933:473083..473253TCONS_00046259-exon-scaffold_108-1510915933:473083..473253Clytia hemisphaericaexon
TCONS_00046259-exon-scaffold_108-1575043694:473083..473253TCONS_00046259-exon-scaffold_108-1575043694:473083..473253Clytia hemisphaericaexon
TCONS_00046259-exon-scaffold_108-1491911889:473644..473689TCONS_00046259-exon-scaffold_108-1491911889:473644..473689Clytia hemisphaericaexon
TCONS_00046259-exon-scaffold_108-1510915933:473644..473689TCONS_00046259-exon-scaffold_108-1510915933:473644..473689Clytia hemisphaericaexon
TCONS_00046259-exon-scaffold_108-1575043694:473644..473689TCONS_00046259-exon-scaffold_108-1575043694:473644..473689Clytia hemisphaericaexon
TCONS_00046259-exon-scaffold_108-1491911889:473935..474026TCONS_00046259-exon-scaffold_108-1491911889:473935..474026Clytia hemisphaericaexon
TCONS_00046259-exon-scaffold_108-1510915933:473935..474026TCONS_00046259-exon-scaffold_108-1510915933:473935..474026Clytia hemisphaericaexon
TCONS_00046259-exon-scaffold_108-1575043694:473935..474026TCONS_00046259-exon-scaffold_108-1575043694:473935..474026Clytia hemisphaericaexon
TCONS_00046259-exon-scaffold_108-1491911889:474836..474892TCONS_00046259-exon-scaffold_108-1491911889:474836..474892Clytia hemisphaericaexon
TCONS_00046259-exon-scaffold_108-1510915933:474836..474892TCONS_00046259-exon-scaffold_108-1510915933:474836..474892Clytia hemisphaericaexon
TCONS_00046259-exon-scaffold_108-1575043694:474836..474892TCONS_00046259-exon-scaffold_108-1575043694:474836..474892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:473083..474892 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.5298	17.4084	69.0817	85.6085	15.2369	15.1709	18.0125	21.4868	21.3274	28.7761	35.7148	24.0795	26.15	29.03	28.101	34.15	24.9366	26.4286	16.815	11.3115	24.4701	21.4203	30.0551	27.3245	25.96	39.625	9.29561	12.2353	18.5601	21.9763
Blast
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BLAST of TCONS_00046259 vs. Swiss-Prot (Human)
Match: DUS2L (tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.813e-41
Identity = 68/100 (68.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:   55 NKMVLDYDNKLILAPMVRIGTLPMRLLALRYGADIVYSEEIIDHKLIYCTRVENKLLGTVDFVASDGTILFRTCQEEKERVIFQMGTCDPERALKVAKMV 354
            N + L Y NKLILAPMVR+GTLPMRLLAL YGADIVY EE+ID K+I C RV N++L TVDFVA D  ++FRTC+ E+ RV+FQMGT D ERAL VA++V
Sbjct:    4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLV 103
The following BLAST results are available for this feature:
BLAST of TCONS_00046259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS2L5.813e-4168.00tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS... [more]
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