TCONS_00046273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046273
Unique NameTCONS_00046273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length982

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046273 ID=TCONS_00046273|Name=TCONS_00046273|organism=Clytia hemisphaerica|type=transcript|length=982bp
CTAAAacaactttcactttcgttctCCGCCGACCGACCATTTCGGTCGGT
TCCATATTGTAAAGGTACAACCACTAACAACTCAAATGCAAGAACTTCTC
ACTGCTTGATACGacTACCAAAGATGCCTTCAGTCAAAGATTTGATCAAG
ATTTTGACCAAAATGAAGAATGTGAAGAAAGCAATGTCCAATGCACCTTA
TGTTGGAATCAAGCCTGGCTTATATGGTGATGGTGATAAACTTCTTGGAG
TCTCAATGCCTGATATACGAAAGtcaatcaaagattttcaagtGGATTTG
TCATTGAAAGACGTGCAGGTACTTTTAGATTCTGAATTTCATGAAATTAG
AATGTCTGGTGTTCTCATCTTGGTGCATCAGTACAAAAAGTGTTCTACAG
CCAAGggaaagaaaaaactatatgaattttatattttgaacgTTGGTAAA
AAGAAGATTAATAATTGGGATTTTATTGATATTTCTGCTCCGCACTTATC
TGGCGATTATTTGTTTGGACAGCGTGTTGATCATGGTAGGAACGTCTTGT
TGGAGTTTGCAAACTCACAAAATTTATGGCTTCGAAGAGTAGCAGTGATT
TCGACTTTTTATCATATCAGgcaaaatgaatttgatttgaCTGTTGAATT
AGGGAAGTGTTTGCTTCAGGATGAGCATCATTTAATTCATAAAGCTGTTG
GTTGGATGCTTCGTGAGGTTGGCAAAAGAGATGAATCTGTTCTCATTAAT
TTCCTTGATGATTATCACCAGGATATGCCACGAATTATGCTCAGTTACTC
AATGGAAAAACTAACACAAAAACAGCGAAAACAtttcttagcaaaaaagt
gATAGTagcaaaatttggtttttaaaggctttttaatgACATTTAAACAT
TTTACTTGATACATATAATTCTACATATTTAACAAAAGTTACTGTCAAAA
AAGATAATCCTTTTTTTTCATACGTCCCAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_108:141842..147785-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046273 ID=TCONS_00046273|Name=TCONS_00046273|organism=Clytia hemisphaerica|type=transcript|length=5944bp|location=Sequence derived from alignment at scaffold_108:141842..147785- (Clytia hemisphaerica)
CTAAAACAACTTTCACTTTCGTTCTCCGCCGACCGACCATTTCGGTCGGT
TCCATATTGTAAAGGTACAACCACTAACAACTCAAATGCAAGAACTTCTC
ACTGCTTGATACGGTATTTTTTTAATACTCCCTTTTTCTGTTTTCTTTCA
TTAGCTAGATTTCTTGTTTTCTCTGCAATAACTTATTTTTTAGTTTTTAG
AACCCATTTTATATATATGTATTGACAGATTGATGCTGCTTTATATAGTC
CTTTTTTCAAAGAGGACGTCCTGTTAGATACCGTGAGAGGTCCTAAAGCC
GACAGCCCAGCCTAATTCCGACCCCCCAAATAACTGTTATGAAAAAAAAT
TCTATGTTTACAAACATTCCCTCTCCAAGTTGAACGATAAACTATTGTAG
AACTCTTGAAACAAAACATCTAACAAGATAGCTGTAATGTCAAGATGTCA
ATTAATGTAAATTAAAAAGTGCGAGTTGTAAAAATAATTACCTTTTATTC
TGGATCAGTTGCTCATGTTTAAAACGATAACAGTTTTGTAATAAAAGTGA
CTTGTGCGGGAAAAATACGAAACAACTTGGACTGGTTTCCATCAAGAAAC
AAACAGACTAAATTGTAAAAATGGTGTGAAGTTGAAAAAAGGGCGGATGC
GGTAGCACTAATTTGAATAACAAACATCGAATCAATGAGGCGGCAACTAT
CAACACCCTCTTTACCACCTATAAGTCCGGATGTTTATTTACGGAAGGCC
CGCAATCGGACATCTCTTCATTTAAGTGTACTCTTTCACGACATATATTA
TCTTTACTAGAATAGGAGCAAGGTGTCATGTAATACATAATACTTGTAAT
ATACCGTGAGAAAGGGTAACTTGCATCATTGGAGGCTAACATGCATAGCA
CTCAAATGAAAGACTTGTCTGGTCATTAAAATACAAAGTTAAATCAAAAC
AAAAATGGTAGAGTAGAGCTTCCAGCGGAGCTGCATAGTTGTATTTTAAT
GACCAGACAGGTCATTCATTTGAGGGCTATGCATGTTAGCCTCCACTGAT
GCAAGTTACCCTTTCTCACGGTACGTCGTCTATTTGTATTCTTATCATAT
AATATATAATATAATGTAATATACGTCGTCTATATGTATCCTTACACAAA
GTCCTATCCCCGCAGTCAAGCCAAGTGCCAGTGTAAAGTAATAGAAACCA
GGCTTGATTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNATCAAATCTCTCAGTTTAGTTGACACTTTGGTATCTTCG
TTGCGTCACAGCGAAAGGTTTGTTTTTATTTTAGTTTGTATCTTTGAAAG
ACCCCATCGGCTTTATGCTGGGCTGTCGGCTTTAGGACCTCTCACGGTAA
TTATGTAGTCCAGCCATAAAAACAATGATAGAGCCATGCATAATTACTTT
ATCATGCATATTGTAATAACATAGCTGTCAACTCTCCCGCATTGAGCGGG
AGACTCCCGCATGTCAACGATTTCTCCCGTGTGAAGAAAATTCTGCCAAA
TCTCCCGCATTTTTGGGATTTTCTCCCGCATCTCCCGCATTATCAAAAAT
TTTCCGATTTTGGAAAAACCAAACGGCGAAATTTCTGGATTTTGAAAGAT
CGGAACGAAAAATTCCCCGATTTCCCGAAAAAAAATTCCAATAAAATCGG
ATTTTACGAGAAAATTTCCCCGATTTCCCGATTTTCCGATTTTGAAAAAT
CGGATTATCGAGGAAAATTTTTCCGACATGGAGCTCTCCCGCATTTTTGT
GAGGCGAAGTTGACAGCTATGTAATAATTATGCATGGTTTTATCATTGTT
TTTCTGCTGGACTACATAATTATTCAACAGGGTGGCCTCTTTGAAAAAAG
GTCTATTACGACCCTGGACACCGCTGTACATTGCGCGGTGGAGTCCGGTG
GGCATCCGGTGGGTGTACGTTGGTATTTTAGGTTAGATCGAAATCACCGT
ACAACACCACCGTACAGAATCCCACCGTACACGGAATTGCCACCGTACGA
TTGTCCGGTGGGAATTCAGAAACCTGATCGGCTTCCTACCGTACAATGTA
CGGTGGCATTTTTCGTGTACGGTGGGACAGGTACGGTGGTAAAAATAGGT
TAGGCTCCGCCCACCGTACACCCACCAGACGCCCACCGGACTCCACCGCG
CAATGTACGGCGGTGTCCAGGGTCGTTTTATATTACAGTCAGGGAAATCC
CTCAATTGCGGTATACTGCAATTGCGGTAGTTTTCATTCGTGTTTAGCCT
ACAAAGGCTTATAACGACTACATACAGTGCTGGTCGACAAAGATAAACAA
ACATCGACTATAAAAATTCGTACGAGAAGAAAGCTTTTCTTTATTAGGTG
CCGTGGTATAGTGGTAGTCGACCTTGGCTTCTGTGCAGGAGGCCAGGGTT
CGATTCCCACTCACGGCAGTTCACTTGGCAAGTGAACATTCCTTCGCCCG
GGTCAACCCATGCCATGTGAGGGGAATTGGGTAGTCAGTTCAAGGTGCTG
ATGGGACGCTCATTAGTAAGCGTCTATAGTTGCGAGAATAGGCCTCTAAA
GCTTCCTGCAACTCAACCAAATAGAAATAGAAAATAGAAATTAAAAGAAT
CTGATCTACGGAAAAAATATTTTGTCTGTGCGTTAAAAAGATATGATCAA
TTATGTACAAAAATTGCCTGCTTTTTCCTTGAATCTTGAATTCTGACTCT
TGAATGTACTGCAATTGCGGTATATGAAAATTGTAAAATTGATGTTTATA
CTGCAATTGCAGTAAAAATTTACTACCGCAATTGAGGGATTTCCCTGACT
GTATTAGCCTATATTAGAATTAAGATATCATCCACTAGGATGCAAGTGAA
ATTTTTCAATCTGCAGACCTAGATGGGGGTTTGGTTATTGTCAGTTAGGG
TTAGGGTTGGAGCTATTGAGAGTCGCAATAAAGGCTGAAGGCCTTCTTAC
CGCTCCGTTAGGGCTGGGAGCTTTTTTAATGAAGGTTTGTAAATTACACG
CTATAAGTATTTGTGAATGAAAGCTTTCTGCCATATCTCGTCGACGCAAG
CAGTCAGGCATTGGTTGCTTGCATTTGGTGAGCCGGGGGGTGGTCGGAGA
CCAATTTTACCGGTGCGGGCAAATTTCAGAAAAATACCCAGAAAACAGTT
AGGCTGGGCTTAAAAAATTGTTGGTTTGCTGTCACCAGACCCTGGATTTT
GGAGGTGGGTCGGTTTTTCTTTTTATTTTGGCAATTTATGAAATTTTCGT
CCATGGAAGGGTTAACAGTTTGTTAACATTTAAGTAATTTTGAATAGAAA
TCAGAAGTGCTAGCAGGGAATTTACAATTCTTATGCTTGAGACAAACGAG
ATAGGTACGAGATTTGTTTTTTTATTGTTTGAAATTTTTGAAGGAAAAAA
AATCTCCTTAAAATAAAATCTTTTGGGTCGACAGGTTTTGAGGTATGGTC
AGTCGGGTGACGGCAATCCAACAATTTTTCAAGTCCAGCCTTTGAAACAC
TTAAGAAAGTCAGAAAATCAGGGCTTGTCCCCCCCCCACTCAAAATGGCT
CGCCGGAGCCCATGAATCTGCATCCTCTCTTCCCGCTGTCTCTATTGTAA
AAAATTGTTTGCTCAAGGGTACAAAGATTTTCTTTAATTAGTTGGTCGAC
ATCAATGATCTTTGACATTAATGATCTTTGAAATTTGCAGCAGAGACAAC
TTCTGTCACATCCAAAATCATTGTCATAAGGATGAAATCTTACTTGTGTT
TTACTGCCTAAATTTTCTACTTGGTAAGACCTTTTGCTTGACCTAACTTA
AACTAGGACTACAATCAGAAGACATTCCCAGTTCCAATCTAATAATAAAG
ATAATTTGCAAGGCCTAAGGTATGAGCAAAAAACAACTGTTATACCAGAT
ACTGCATCTTTTGATTGGTTTTATTCATAAAAAGTTTTATTTGTATCATT
TGATTATAATAGGACAGTTTATTTCCAATTTATGATTTCTTTTTATTTAT
TGAAGTTTATAATGTTTATAATGTTGATGGCATTGATATCAAACCAATCG
TTGTACTTTGTTATTGTCAGACTCTGAAGATAAAAATCTGAGGGGGGACT
CCTTTATTTATTTATACTGGTAATTTCTGTTCGATTTAACGGGGGAGTTA
GCTTTAAGGGCAAAATTTTAAGGGGGGACTGAAAAAGTAGGCAGAAACAA
TGGAATATCTGCCCTTTTTGACAGTGATTATTAGAACAGATCCTACAATT
TCCAAGGCACTAATCCTATACTCGGAACAGGTCGAATTACAGAACAAATC
GTGTTTCTACAGCCAAAGTATAGATAAAACTAATAGAACAGACGGATGGA
AAAATCATCCATGTTATGATGGTTTATAGTTTTATAAGGACATCATCCCA
TCTAACACAAATAAATAAAAATATATGATTGATGAAAAAAAGTAAGAGAA
GGGTATAATGGATGGATAGAATGAAAATCATAAAAGCTTTGACGAATCAA
CATTTCTGAAGGGGGTAATAAGATAGACTGTGTGNAAAGTATAGATAAAA
CTAATAGAACAGACGGATGGAAAAATCATCCATGTTATGATGGTTTATAG
TTTTATAAGGACATCATCCCATCTAACACAAATAAATAAAAATATATGAT
AGATGAAAAAAAGTAAGAGAAGGGTATAATGGATGGATAGAATGAAAATC
ATAAAAGCTTTGACAAATCAACATTTCTGAAGGGGGTAATAAGATTGTGT
ATTATTACTTTTGTTTTGTTTTCAGACTACCAAAGATGCCTTCAGTCAAA
GATTTGATCAAGATTTTGACCAAAATGAAGAATGTGAAGAAAGCAATGTC
CAATGCACCTTATGTTGGAATCAAGCCTGGCTTATATGGTGATGGTGATA
AACTTCTTGGAGTCTCAATGCCTGATATACGAAAGTCAATCAAAGATTTT
CAAGTGGATTTGTCATTGAAAGACGTGCAGGTACTTTTAGATTCTGAATT
TCATGAAATTAGAATGTCTGGTGTTCTCATCTTGGTGCATCAGTACAAAA
AGTGTTCTACAGCCAAGGGAAAGAAAAAACTATATGAATTTTATATTTTG
AACGTTGGTAAAAAGAAGATTAATAATTGGGATTTTATTGATATTTCTGC
TCCGCACTTATCTGGCGATTATTTGTTTGGACAGCGTGTTGATCATGGTA
GGAACGTCTTGTTGGAGTTTGCAAACTCACAAAATTTATGGCTTCGAAGA
GTAGCAGTGATTTCGACTTTTTATCATATCAGGCAAAATGAATTTGATTT
GACTGTTGAATTAGGGAAGTGTTTGCTTCAGGATGAGCATCATTTAATTC
ATAAAGCTGTTGGTTGGATGCTTCGTGAGGTTGGCAAAAGAGATGAATCT
GTTCTCATTAATTTCCTTGATGATTATCACCAGGATATGCCACGAATTAT
GCTCAGTTACTCAATGGAAAAACTAACACAAAAACAGCGAAAACATTTCT
TAGCAAAAAAGTGATAGTAGCAAAATTTGGTTTTTAAAGGCTTTTTAATG
ACATTTAAACATTTTACTTGATACATATAATTCTACATATTTAACAAAAG
TTACTGTCAAAAAAGATAATCCTTTTTTTTCATACGTCCCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029550XLOC_029550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046273-exon-scaffold_108-1575043694:147673..147785TCONS_00046273-exon-scaffold_108-1575043694:147673..147785Clytia hemisphaericaexon
TCONS_00046273-exon-scaffold_108-1575043694:141842..142710TCONS_00046273-exon-scaffold_108-1575043694:141842..142710Clytia hemisphaericaexon
TCONS_00046273-exon-scaffold_108-1510915933:147673..147785TCONS_00046273-exon-scaffold_108-1510915933:147673..147785Clytia hemisphaericaexon
TCONS_00046273-exon-scaffold_108-1510915933:141842..142710TCONS_00046273-exon-scaffold_108-1510915933:141842..142710Clytia hemisphaericaexon
TCONS_00046273-exon-scaffold_108-1491911889:147673..147785TCONS_00046273-exon-scaffold_108-1491911889:147673..147785Clytia hemisphaericaexon
TCONS_00046273-exon-scaffold_108-1491911889:141842..142710TCONS_00046273-exon-scaffold_108-1491911889:141842..142710Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:141842..147785 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.12683	3.41623	2.17168	2.11045	13.6592	10.2024	8.97873	9.38374	7.13756	6.77864	7.35208	12.8076	5.8449	6.75448	6.0738	7.34274	3.44997	6.94206	3.37871	3.63753	8.47734	6.34431	5.49432	5.00343	4.61023	5.2375	3.67513	5.91381	1.94367	2.80815
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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