TCONS_00046281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046281
Unique NameTCONS_00046281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046281 ID=TCONS_00046281|Name=TCONS_00046281|organism=Clytia hemisphaerica|type=transcript|length=3297bp
GGAAGAATAAATTAGAATTTGAcctaaacaaaaaagaaaactgaaaaaat
aacagaaacattacatcatcaaaacaaagatggcagatacaGTTACAGAG
GAGTCTGGACAAGAGTCTTGTTGGTCGTCATCTGATGAGAGATCATCTGG
TAATGAATATTCAGTCAAAATGAAGAATGAAAAACTTCCCGAAGACGAAG
CACTGAAGGAGCTGTAtcggaaaaagaagaagaaaaagaaacataaacga
AAACACAAGAAGAAGAAAGATCGGACTGCTGATTCCTCAGATGAAGAAGA
TCAGAAAGAAGGTGAAggtaaaaagaacaaagaagaaaagaagaaagcaA
ATGGCGTCATTAAAAGCAATCAATTGTTGTTGAAAGTAGACGCCATCTTG
GAGAGTGCACTGTCAGCAGtcgaagagaaaaacaacatcaaGAAAGATTC
TAGTATTAAAGACACAAAGAAAACTGTTGTCGAGGATGTTAAGAAAAATT
CCAACAAAGACAATAAACGAACTTCGAAGACCCGATCAAGGTCGAAAGAT
CGAGGTGAATCGAAGAAACATTCTCGTTCAAAGTCGAGAGAGAAAAGAAA
GCGTTCGAGATCTAGAGATCGAAAAAGAAGTCGTTCAAGGTCCAGAGATC
GTAAAAGAAGTCGTTCAAGGTCTAAAGATCGAAAAAGGAGCCGTTCTAGG
TCTAAAGATCGAAAAAGAAGTCGTTCTCGGTCCAGAGATCGAAAGAGAAG
TCGGTCCAGATCCAGGGACCGCAGAAGAAGTCGTTCGAGGTCCAGAGACC
GCAGGCGATCACGGTCTAGGGAGCGGCGCAGTCGAAGATCTCGATCAAGA
TCAAAAGATCGGCGTCGAAGGTCGAGGTCACGATCAAGGTCCAAGGATCG
TCGACGTCGCTCCAGATCAAGGTCCAGAGACCGTAGACATAGATCAACCT
CTAGAGATCGCCGTCATCGTTCACGATCTAAAAGTCGAAATAGAGAAACT
GTAGACACTAAACAAGACATCGAGGGTCCAGTACCATCGAAATGGGACGT
TAAAGAAACTGAAGCAATGAGAATAGTTAATGCAGAAACTGACAATGTAT
TTCAAAAAGTATCAGCACTCCGTAGATCCGGAATTGAAATCAAGTACGGG
AACACAGTACCGGGTAAAGATGCACGGGATATTCTTAACGCAAAAGCTAA
ATCATCATCCACCTCTAAGAAAGAACGCTCAGATCCATATGGGAAATGGG
AATCAGTGCCCGATGGTGGAAACCGTGATTTGAATAAATTCACAAAACTG
TGTTTAGAAATTTCAGCCAAAGATAGCAAATACGATAGCCATCTTGCTGA
TAGTAGGCGGAGTAGTGACGATGATGAAGCTGAGATCCACCATCCATTCA
TATCGAAGCCAGCACCCATGATGTTCCCATCTTCCTCAGGAGGGTACAGT
GGAAGTAGTAGAAGCAGGATTGCTATGAATCCCGCACAAGCTATCATGGC
AGGTTCAATGAATTCCATCACAGCCAACCCAGCGGACATCATCACTGGCC
CGTTAGAGAAACATTTCCCTGTTTCTGCGGGTAATGACCATCGTGAAAAG
GAGAACGCGAAGGGAGAAGAAGCTGACCTTCCTGTCTATGAAGAAGTTGA
CGAAGGACCCACAAAGGTAAGTGAAACAATCAGAAATCAATTGCTGCTTG
GAAACTGTCTTTGTGATCCTTGAAGGCTTATTATaatagtggggtcgttt
agcataatttacggggaaaaaaataagatctagctgaaactttctctata
ggatggttatgcctcaagaaaaaattccctaaaatcccactggtggaaca
tcctttttttgggacatttcttttttccccaggcaaaaccctaagggcga
aatttttttcaaacgtatttccagacaatatcatgtataccattcgaaag
ctctcgaaaaactatatagaagacttttaaacgggtatagccgatttcat
tacctactaactcaagataattcacgcagaagatgctatttatggtcaat
tttagaccaaaaatgtttttttcctacaaacagcctgtatttttgtaaca
cgaccacactataaGGCTCAACGCCCAATTTGTCACTAAATTTTTGATCA
AATCTTTTTAATGGGGAGCAGAGCAGCTGAGAGTTTGTTGTCTATTCCTT
GACTTCGGCCTCTACTGACAAGGCTGATTTCCCTTAAATCAGAGTTCTTT
GAAAGAGGTTTCGATTATGATATCATTTGGTATCCAGTCTATTTGGTATA
CTTTGGTATACAATCTACGTACTTTCTAGTTTCGAATCCGAACCGAGGCT
TACtttacaaagtttttgaaaagtgatttcCTTGCTGTTCCTTTTTCCAG
CCAATCAACGTAAGCGCTGTAATCGGGCGGCGTATGGGCGCCCAACAACG
TTTGAACGCTAATCCGAACGATCAGTTAGCGCGTTCGGTTTTAGAAGAAT
GTGATTTGAAACTTAAAGGATGGACTGAGAAGAATCGAAAACCGGGCAAA
TTTACCGGTGAACGAGGCGTGCTGATGAACAAGAAAGAGATTGCAGGTGC
CGTAGAAACCTGGGTCCGAAAGGATTTCTTTCACAATTTGATGCCAGTAT
GTGGAGGTGTTGGTATGCGAATGTTGAAAAATATGGGTTGGAAACAAGGA
ACTGCTCTTGGCAAAAATCGCGAAGGATATGTGGCACCGGTTACTTTTGA
CGTCAAAGTTGGTCGCAGTGGATTAGCTTCTCAAGAGGAACAACCTCAAA
GAGGGCGTGGCTTGTATGGAAATAACTCCTTTCAACGGAGCAATTTACCG
AAGAAAAAACTTGCACCTGTCAATAATATAGGAGgcaAACACCCGGTATC
GGTATTAGCAGAGAATTGTTCTAAAAGAAAGATGGGGATGCCAGAATACG
AATGTGTGTTCGAAGGTGGTTCATCACACAATAAGACTTTCCTCATCAAA
TGCACCATACAAAATGTAGACTATCAACCTTCAGTCGCATCTCCAAACAA
AAAACACGCCAAAGCTCAGGCTGCAATGACTGCTCTTAAAATCCTGGGTT
TTGATCAATAATAGGCTTTCTACCACATAATTGTCGCGAAGAATTGATAC
ACACCTTAAAGCTTAAACTGTTATAAATGCTTTCAATACACTCGATGTTT
GTCAATTAAAGGCTTATGTAGCCCACACTAGAGAAGAAACACATTCCAAA
ATACagatacagtggagtctctataattcgaacctctataactcgaa
Run BLAST on NCBI

transcript from alignment at scaffold_108:275181..289737-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046281 ID=TCONS_00046281|Name=TCONS_00046281|organism=Clytia hemisphaerica|type=transcript|length=14557bp|location=Sequence derived from alignment at scaffold_108:275181..289737- (Clytia hemisphaerica)
GGAAGAATAAATTAGAATTTGACCTAAACAAAAAAGAAAACTGAAAAAAT
AACAGAAACATTACATCATCAAAACAAAGATGGCAGATACAGTTACAGAG
GAGTCTGGACAAGAGTCTTGTTGGTCGTCATCTGATGAGAGATCATCTGG
TAATGAATATTCAGTCAAAATGAAGAATGAAAAACTTCCCGAAGACGAAG
CACTGAAGGAGCTGTATCGGAAAAAGAAGAAGAAAAAGAAACATAAACGA
AAACACAAGAAGAAGAAAGATCGGACTGCTGGTATGATGAATATTTTGTC
CCCTTTCATTTTCAAAGTTTGAATCTCAGACCTCTATAGATGTACTTCTA
CAAGAAACTTATTCATTTCCCTAATTTTCAGATTTTTATTCCAATCTTAA
TCTCCATAACTCGAACACGCACGGATAACGCAGATTTGTTTGAGTTACTG
ACTAAGGTTTATAAGGCGTTGTTAGCTGGAGGGACCATAAAACTCGTTCG
ATTTATGGAGACATTCGAGTTATAGAGGTTCGAGTTAAAGTGACTCCACT
ATACTGTTAAATTATAAAAACATAAGAATAATTCAGATGCTGCAGGCCAG
TCTCACTAGAAAATCTACAAAATAAGTAGATGTATAAATTTTCTTAATTC
TGCGGACGTCTGTAGAATTACGGCACTCTTTAATATCGACATATAATGTA
GAATATAGAATTCAACTGATTTTGTAGATATTCTAGAACGATTTCACTTT
GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAGCTCCAAACCC
CTGACCCAAGAACTTTTGTAGTGACGAGTAAACAGTCTAACTGACGAGTT
AGGCTAACTGTCTAGATCGCTATTTATCCGGTATTATTCTGTAGAAATTT
TAAATTTACACCATCTACGTATTCTGTAGAATTATGTGTGATAATGTGTT
GGATGCTGATAAAAAGCATGTAACCGCACCCGTATGCGGTACCCAATAAC
TGAAATTTGGTGTTACTGTTCAAAACTTCATGCTTTTATCACCATCTGAA
GTATTTTTGGTGCTAGGAGACCTCATTGATACACAAAAACGCTTTCATTC
CACTGTTTTTGAAATTTTGATTTTCTTTGTAGATTCCTCAGATGAAGAAG
ATCAGAAAGAAGGTGAAGGTAAAAAGAACAAAGAAGAAAAGAAGAAAGCA
AATGGCGTCATTAAAAGCAATCAATTGTTGTTGAAAGTAGACGCCATCTT
GGAGAGTGCACTGTCAGCAGTCGAAGAGAAAAACAACATCAAGAAAGATT
CTAGTATTAAAGACACAAAGAAAACTGTTGTCGAGGATGTTAAGAAAAAT
TCCAACAAAGACAATAAACGAACTTCGAAGACCCGATCAAGGTCGAAAGA
TCGAGGTGAATCGAAGAAACATTCTCGTTCAAAGTCGAGAGAGAAAAGAA
AGCGTTCGAGATCTAGAGATCGAAAAAGAAGTCGTTCAAGGTCCAGAGAT
CGTAAAAGAAGTCGTTCAAGGTCTAAAGATCGAAAAAGGAGCCGTTCTAG
GTCTAAAGATCGAAAAAGAAGTCGTTCTCGGTCCAGAGATCGAAAGAGAA
GTCGGTCCAGATCCAGGGACCGCAGAAGAAGTCGTTCGAGGTCCAGAGAC
CGCAGGCGATCACGGTCTAGGGAGCGGCGCAGTCGAAGATCTCGATCAAG
ATCAAAAGATCGGCGTCGAAGGTCGAGGTCACGATCAAGGTCCAAGGATC
GTCGACGTCGCTCCAGATCAAGGTCCAGAGACCGTAGACATAGATCAACC
TCTAGAGATCGCCGTCATCGTTCACGATCTAAAAGTCGAAATAGAGAAAC
TGTAGACACTAAACAAGACATCGAGGGTCCAGTACCATCGAAATGGGACG
TTAAAGAAACTGAAGCAATGAGAATAGTTAATGCAGAAACTGACAATGTA
TTTCAAAAAGTATCAGCACTCCGTAGATCCGGAATTGAAATCAAGTACGG
GAACACAGTACCGGGTAAAGATGCACGGGATATTCTTAACGCAAAAGCTA
AATCATCATCCACCTCTAAGAAAGAACGCTCAGATCCATATGGGAAATGG
GAATCAGTGCCCGATGGTGGAAACCGTGATTTGAATAAATTCACAAAACT
GTGTTTAGAAATTTCAGCCAAAGATAGCAAATACGATAGCCATCTTGCTG
ATAGTAGGCGGAGTAGTGACGATGATGAAGCTGAGATCCACCATCCATTC
ATATCGAAGCCAGCACCCATGATGTTCCCATCTTCCTCAGGAGGGTACAG
TGGAAGTAGTAGAAGCAGGATTGCTATGGTATGCCTATCTTTAGTTTTAT
TGTTTCTTGAGTTTGAACCTTCTATTCAACTCGGTACTCTTTGGCAGCTA
CTTGTATGAGTGATCTTATTTGCTTAAAAATTGATGTTTTAGAACTAGGT
TTTTTATGTTTGGTTAAGTATCGTCGTTTCCACCATTATGGAAGCAAACG
TTCTATTTGCGTCAGGGCAGGGGAGGGCACCACGTTGTGGTACTAGACCA
GTGCCGAAAAGTTGTACTTTTCTTATTTTTTGAAATTTACCTAAGACTAC
CACCACTTAGTACCCTGGTACTAAGTTGAACTTACCCCTTAAAATAGGTA
TACCACCCCTTAGTACCCGGTACAATCTTGATATGACCATTGAGAAATTT
TACTATCGACCCCCCCCCCCCCCCCTCCCCCCCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTAGTAAAATCTCAGACATATATGAGT
AGTAAAAGGATTTTTGCGAATTTTTACATACCACCACCCAGACTCTTGGA
AGAGGTATTTTACTACCCTGGTAGCAAAAGTTTTTGGGACAATTTGTCAT
GGAGACAGTCTTTTCGGACTTATTTTACAAAAAAAGCTAAAAAATTATTA
TTTCTGCGACACATTTTTCACTTAGTGCAAAATCTAATGTTTTGCCCTTA
GAATTGAAATCTTTTTTATATATTAACAAAAAATTTCGAGAATTTTTTGT
TTGCAGCAAACAACTTTCCAACGGAAAATTTTTTCAAATTATAAACATTT
TCAGCTTTTTTCAGAAAAATAGCTAAAATTTGCTAATTTTACCAGTTTTA
ACTACCCAGGTTGGAAAAATATTTAAAAATTTAACACATAGATACCACCC
ATTTTAGTATTTAACTACCCTGGGTAGTAAATTGTTTTTTAGATTTTTCG
TCACACCCCCCCTGCCGTTAAGTACCCTGTATTAAGTTGATTTTCCCCCT
CAAAATAGGTATACCACCCTTTCATTTTTAGTAATGGTACTTTCTGGTAC
ACCTCCTTTAAATTTTCTAAAAAGCTTCCTTTTTATGAAGAAGTGGTGGT
TTCCCCCTCATTTTGGTCATAAATCGCTTATAAAATAACACTTCTACATC
AAATAACTCCCATTCAGTACAGAAATCAGCCATGCTTGCTTAAAAGTCTT
CTATATAGTTTTTCAAGAGCTTTCAGATTCTATAATTGGTTTTGGCCTAA
AATGAGTTTGAAATCTCCATAAAAAATGAGCTCTTGGGCTTTACCCTAGG
TTTAAATAAATGGGTCCAGAAATAAGGGCTACCCTTAAGTCTTTTATTGG
GTTGCCCTTCTAATATCAATCCACAGGGTATTAGGCATGTCTGGTCCAAA
TTTGGTGCTTTGTTCCAAATTTGCACGATTTTTACACTAATCAGGCCTAC
TTTGATAACACCCAGGGGAAAACAAAAAACAAAAGTTTAATAAACAATAA
ACGTAATAAACATCCTAATGAAATGGTAAGAAATAAATATAGACTGCCTA
CAATAAGATTTTTTTTGTGATTTTTCAGGATTTTGAGTACCAGATACTAA
CTTGATGCCTCATATTTGGTATTGAGACCACCATTTAGTCCGCCTTGATA
CAAAGTTGCAAAAATGTTTTTTTCAATAAGGACCACCACTTAGTACCATG
TACTAAGTTGTTTTTTACTTATCTTATCAGACCACCACCCGGCACTGGCC
CCCACAACTTAGTACCAACCCCCCCCCCTGTCAGGGATCGCTTCTACAGC
CTCGAACGTATGCTTCCAAAATGAATTACAATATTTAGACAAACATGAAA
AACCTATTTAGATGGAAATGAATGGGAATTTTCGCATGAAAATAGATACG
CTCTACAATTAGCTGTCACAGGTGAACCTGTATCCGCTGTAATTTGTATT
TATTTTATCATGGTATTCACGAGTTCTCTATATCCCTGCCTATCTTTTCA
GTTGTGATACTGACCGAACACATGAGTTTTTAATTCTTAATGAACCGGTC
GAAATGACGTTTGTTTGAGAGCAAAAATACTTGCGTTATGGCGTTCTTCA
TTTTTGACTCTAGTCTACTAGGAGTAACTACGTGAAAATGCTTCTATAAT
TAAGACGGTTAAGAGCAGCGGCTTTCTTTTATCACCACCTTCACACGATA
CGGTTCCGTTTCGTTCCTACATGAAAAGTAGTCATTCTATTGGTTGAATT
TAATTGTTACTTCACTTCTCACCAATAGAATGACTTCATTTCGTTTCGGG
GCGAAACGGTACCGTAACCTGCGAATATGGTATAAAACTAATGAATTTCC
GTAAATTGTAGGTATCACAGGACTCGTGAACATCATGAATGTATATTTTA
TTTTTAGGTTGAAGACAACACAATGATTATTGAGCAGTTCTCCATCAAGC
CTTCTTGTCGCAGTAGCGCTCTCAGCACTCTAGAAGGAGCAAAATTTCAT
ATCATTTCAATTTTTAAGAACAAACCAGAAATCTGTGGAAAGTGTTTACC
ATACACCTATCAATCTAAGATTTGCTTCGAGTTTACTTGGATTGAATGAA
ATTTTTCAACCCTGATGAGCTCAAATCAGATCCCCTTTTAAACAGCCACT
CCGTGTATAGATATCTCTTAGATTGGCTTGAATATTTTTATGAAATTTTG
CTCCATCAAAGATGATTGGCAAACATAGAGTGCTGAAAACGCTACTGCCT
CTTATATATATATAAAGAACTTTCCCGATTTCTGTTTTTTGTGGAATAAT
TCACAGTTCCAAATATGTGTTTTTCTCGCTTTTTCAAGAAATCTGGAAAG
TTCTTTTCATTCCTGATACTCCAGGATATTCTTAAGCTTGATTCTTTCCG
TGGCATAATCTTTTAGCATATATGATAGAAGTCATAACATGATTGTGTCA
TAGAGCAAAATCAAACTTAAGCATATCATGGATGGAATTAAAGTCCATTC
GTTTTAAGTGTGCACTGATTCTTATTTTGCTTAGCATTTTTCAAACAATG
CTTTAAAAAACACTGTTTTTTGCTGCTTTTATTTTCAATTAACTTAAAAT
GTAAAAAATATCACACATAATCTACCTCCATACCAAAAAAAAAGTTTCTA
ACGTCAAAAAAAAAGAATTTAATTATTTTCCTCATGTCCTCATTCAAATA
ATCTCAACAAACATTATAGTACTCTGAATTATCTTTTCAACCGTATATAA
TTTGTTGGAATTGAAACATTAGTTGAAAGGTGGTAAGAAAATTAGAATTG
GTGCACACTTAAAGCAAATGGAGTTCAAAGACTTGATGGTGAACTGTTTC
AAAATAACTTTTATTTCATACAGCAGAGGGGGTTCAAAAAGATTTTAAAC
ATCCCTCCGTGGACACCCTGTGAAGTGGTTTTGACCTATAAACTTTAGCA
AGATCTAGAGTTACTTTTAAAATCTTTTGCATTTGGTTGCTCCCAGTTTT
TTTTTCCCAAAAGAGGCTTTTCTGGTTTTTATACAGGTTTTTATACAGGT
TTTTAAGGGTTTCCCAAACCTAATGAAAATCCGCCATTATGGAAGCCGAC
GTTCGAATTTGTAGAGACGACTCCTTGCGCAAATAAAACGTTTGCTTCCA
TAGTGGCAAAAGGGGCCTGGAATTCCCGAGTTATTTTTTCTGAGTTACTT
TGCATTTGACGTCATAATTTCAGTTTTACGACGTCATTATGACGTCAGAA
AAATGAAAAAAATGAAAAATGATAACTTGAGTTTTTTTTGCGGCTTTTAA
CTTTTCGAATTATTTGGTAATTATTTACTCGATAAAAACTCTAACAAAAA
TAAAATTATGGTGTCACATGGAAAATAACTCGGTAAAAATAACTTGGAAA
TTCCAGGCCCCATGGCAAAAGTTACGTAACTTGGCCAACTTGAAAATCCT
TTATTCGTGATATTCATGACGTAATGTTTTCTACGGAAACACTCCGGTTT
TTGTCATCAGTGGAAATTTTGATAAAGGGAAAAATTGTTTAAATTTTGCC
AGTACTGGCAAATGATGACCATTACGTCATGAATATCTTAAATAACAAGA
AGTGAATGTGTGGTGAAGGATTGCTCCAAACCCTTTACTACACACTCTAT
TAACTTTCTCATTGGGCGCTTCCAGAAAAAAATTGAATATGGGGGGTGGA
GGATATAACATTTTTTGGAAATCCTCCCCCCCCCCCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCACCCCCCCAT
GTACAAACATTTTCTGGAAGAGCCTATCATTGCATTTTACTCACTTGTTC
ATGGGTTCAACATTTTCAAAATGACGACAGGTAACTTTTATGGAGCCATC
GATTTTATTTGACATTTCCTTTATTGAACGGGCTAAAATCGATGGCTCTA
AGGTAATTGGTATTAAATTATTTTCTCTCTGTTAACCAGCTTTATTATCA
GTAATCTTTCAGTGTTTCTGCGATTCGATCATGATGAAATTTTAGGTTAT
ACCAGTATATATTCTGCCATCATATTCAAGCAGTGTGAATGAGTCCAAAT
ATTATGATGATTTGGCTCGAGTCTGGGTTAGTTGAAGCCTGCGTATTTCT
TTAGATAATACTACAGTTGAGCCTCTCTATTTCGATTTGAAAGGGAAATT
TAATTTTCATCGAATAAGGAAGTGTATTGAATAGTAGAACGTCGTTTATG
AGAGTTTCTTGTTTGCAGTGACTTACAATATTATCGAATAATGGAGCGTA
TCGAATGGGAGAACGTCGAATTATAGAGCTTCAACTGTACTTTTCTCATT
CTTAACTTTACCGTTTTAATTTATATTTTAGAATCCCGCACAAGCTATCA
TGGCAGGTTCAATGAATTCCATCACAGCCAACCCAGCGGACATCATCACT
GGCCCGTTAGAGAAACATTTCCCTGTTTCTGCGGGTAATGACCATCGTGA
AAAGGAGAACGCGAAGGGAGAAGAAGCTGACCTTCCTGTCTATGAAGAAG
TTGACGAAGGACCCACAAAGGTAAGTGAAACAATCAGAAATCAATTGCTG
CTTGGAAACTGTCTTTGTGATCCTTGAAGGCTTATTATAATAGTGGGGTC
GTTTAGCATAATTTACGGGGAAAAAAATAAGATCTAGCTGAAACTTTCTC
TATAGGATGGTTATGCCTCAAGAAAAAATTCCCTAAAATCCCACTGGTGG
AACATCCTTTTTTTGGGACATTTCTTTTTTCCCCAGGCAAAACCCTAAGG
GCGAAATTTTTTTCAAACGTATTTCCAGACAATATCATGTATACCATTCG
AAAGCTCTCGAAAAACTATATAGAAGACTTTTAAACGGGTATAGCCGATT
TCATTACCTACTAACTCAAGATAATTCACGCAGAAGATGCTATTTATGGT
CAATTTTAGACCAAAAATGTTTTTTTCCTACAAACAGCCTGTATTTTTGT
AACACGACCACACTATAAGGCTCAACGCCCAATTTGTCACTAAATTTTTG
ATCAAATCTTTTTAATGGGGAGCAGAGCAGCTGAGAGTTTGTTGTCTATT
CCTTGACTTCGGCCTCTACTGACAAGGCTGATTTCCCTTAAATCAGAGTT
CTTTGAAAGAGGTTTCGATTATGATATCATTTGGTATCCAGTCTATTTGG
TATACTTTGGTATACAATCTACGTACTTTCTAGTTTCGAATCCGAACCGA
GGCTTACTTTACAAAGTTTTTGAAAAGTGATTTCCTTGCTGTTCCTTTTT
CCAGCCAATCAACGTAAGCGCTGTAATCGGGCGGCGTATGGGCGCCCAAC
AACGTTTGAACGCTAATCCGAACGATCAGTTAGCGCGTTCGGTTTTAGAA
GAATGTGATTTGAAACTTAAAGGATGGACTGAGAAGAATCGAAAACCGGG
CAAATTTACCGGTGAACGAGGCGTGCTGATGAACAAGAAAGAGATTGCAG
GTGCCGTAGAAACCTGGGTCCGAAAGGTAATTGAATACGTTTTGTTATAT
GTCATTTTTTATAAGTGGACTCTCGTTATAGATCATGATATTCATTATGT
CATGTTTTAGAAACAATCCCGGTTTTTGCCAGTAGTGGCAAATTTAAACT
ATAGAAAAGTTGTTGCCACTACTGGTAAAAAACGGGGTGTTTCCGTAAAA
AACATTATTACGTCACGAATATTATGAAAACTTTTTCTGTGCTTTTGATT
CTTTTGTACAATTTATACTAATTGTCATTACCGGCAAGAAAATACCTTAT
CAAATACTTTCTACCATTCAAATCTCTCTGTAACTCAAATAAATTAAATT
TTCTGTTCGAGTTTGAATTAGTATTTCAGAAAGTCGTCGTATGTTATCTT
AACTTATTCTGCTCTTGTAACCATCATATGGGCCCCCCCCAGCGGTTTGC
GTGATTGCGTGAATGGGCATTTTTGGTTGCGTGAATGCGTGAAAATTGAA
AAAAAATGCGTGAATGCGTGAATTAAAAAAACTTGCGTGAACGTGAAAAT
GTACTTTTCGATTGCGTGAATGCGTGAATCTTGGCTATTTTGTGCGTGAA
TACGTGAATTTTCCCTTTTTTCCACCAATTATGTGCAGTTTTCCCAATTT
TCCAATGTTTCCCCAATTTTTCACAAAATACTTTCCGATTTCTGAAAAAT
CGGGTTATTGCGTGAAACTCGAGGAAAATTTGCGTGAATGCGTGAATTTC
GAATAAAAATTGCGTGATTGCGTGAATTGAGGGTCCGCTGGGGGGGCCTC
ATCATACTTTGATAGAATCATGTAGGTTTAGGAAATGTATGTTTTTTGCT
AGAATATTCGCTACAAAATTTAACCAAAATTTACTTTGAACAGGATTTCT
TTCACAATTTGATGCCAGTATGTGGAGGTGTTGGTATGCGAATGTTGAAA
AATATGGGTTGGAAACAAGGAACTGCTCTTGGCAAAAATCGCGAAGGTAT
TTTTCTTATGCATTTATTGTGCTGTCTACTGTACCTACTGGGTTACCCAC
CTACCTACCAGACCTACCAGTTTTTCAACATAAATTTTGATTTGACTACC
CTATTTGACTTTCTGCCTCAATTCTTTCTCAAAAATCCTTCCTATCTTTT
GTAACTCAAGGTGTTTTCCGTGCCAATGAGTGAATGGCTATACAAAGTTA
GTCGCGAACGGTTATGTATTCAGTGGCGAGCAGCCTTATCTAGTGTGCCG
GGCAACTCTAGATGGACTTCATTGACCCGTGCATATTCCACATGGCCCTG
GCAGCCAATTATGAAAACTAAATTATTTAAAAATATTCGTATTGGTTCCC
TGAATGTTGGAACCATGAGAGGTAGAGCTGGTGAAATTATCGAGACTGTG
TCACGCCGTAGGGTTTCAGTCTGCGCTATTCAAGAATCACGATGGAAAGG
CCAATCAGCTAGAATGATAAGCGGTAAAAACTGCAAATATAAGTTCCTTT
GGTGTGGTGATGAAACTGGTTTTGGTGATGTGGGTCATCTCGTGGAGGAG
GACCTTGTTGAGAATGTGATATCTGTCGAACGCATAAACAGCAGAATCAT
GTACATTCGCATCATGATCGAAAAATCCATTATCCGTATCTTTAGTGTTT
ATGCGCCTCAAACTGGTCTACCTGAGTTACAAAAAGAAAAGTTTTACAAC
GATCTTCTTACTCAGACAGCCCTAACACCGGAAGAGGAATTTCTTCTAAT
CTGCGGTGATCTTAATGGTCATGTGGGTAAAGAAACAGCAGGTTTCGACA
ATGTTCACGGTGGAAATGGTTTTGGTGACAGAAATGCTGACGGTATCAGA
CTTCTTGACTTCTGTTTAGCTGCTAATCTTGCTATCACTAACACATTCTT
TTCTAAATCAGACAATAAATTGGTCACCTACCAGTCTGGTGCCACAAAGT
CACAAATCGACTTCATCTTAATTCCGAGAAATCACCTAAAAACAGTCCGC
AATGTAACTGTAATTAATGGTGAAGAATGCACTCCACAACATAAGTTGAT
TGTTGGTGACATTATTCTGAATGCAGGTAAGGTGACTCTCAAAGCCTTTC
CCAGACGCAGACGCGTATGGAAACTAAAAGAGCCTGCTATATGTGAGGAT
TTCTGTGCAAGTGTTAATGCGAAATTGCAAAATGCTGTTGCTTCTAATGA
TATTGATGAATCCTGGAAAAATTTGAAAAACTCTATTCTTGAATCCTTTG
ATACTTCCTGCGGTTGGTCAAAACCACATCAAAGACGCAGGGAAACTTGG
TGGTGGAATGAAAGGGTTGATACTGCTGTTAAGGAGAAAAGAAGACTTTG
GAAGATCTGGAAACGTGGTGGTCAGAAAGAGCCATATCTGGCTGCTAAAC
GCAGGGCAAAATCTGAAGTTTACCAGGCTAAAAAAGATGCTTCAGTTGAA
AGGTTTCGTAATTTGAATGAGAAAGATAAGCTTAACCATGTCTTCCAGCT
TGCTAGAAAAATGAAGTCTGAGAATCAAGACATTGTTGGTGAAAAGTGTA
TTCGTAACAAAGAAGGGGATATTGTATATGATGATGCTTCAAAGTTAGAG
GCCTGGAAACAACATTATGATGGTCTCCTGAACTCTGAATTTGCCTGGGA
TGAATCTGCTCTTCCAAACGCAGATCCCATTATGGGTCCCTCAATTGAGA
TAACTGAGGCAATGGTACTCAAAGCCATTAATCAGATGAAATCTGGCAAA
TCCGCTGGGCCAAGTGGCATAGTTTCTGAAATGCTTAAGGTCTCGCGCGA
TAGTGTTGTCCCGAAACTCACAACCCTTATAAATTTGATTATTCGAGAAG
GTAAGGTACCTGATGAATGGAACGAATCGTACATCATTAGTTCGTATAAG
GGAAAAGGTGACTCCCTTGATTGTGGTAATTATCGCGGTCTCAAGTTGTT
AGAAGTACTGCAGAAGGTACTGGAGCGCATCTTGGAAAGTCAGGTCANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAATCTTAATCGACTCCATGCAGTTTGGTTTTATG
CCTGGTCGTGGAACAACAGATGCCATATTCATCTTACGACAACTTCAAGA
AAAATATCTTGGAAAAAGAAGGACATATTTTTTGCCTTTGTTGACCTTGA
AAAAGCCTTCGACCGTATACCACGGAAAGTGCTGTGGTGGGCCATGCGAA
CTCTTGGTGTTTCCGAATGGATTGTAAAAACGGTTCAGGCTATGTACAAT
TCTCCAAGATCTCGTGTTCGCATCAATGGTAAATTCAGCGACGAGTTTGA
TGTAAACGTTGGTGTGCATCAAGGCTCAGTCCTGAGTCCTTTGCTATTTA
TAATTGTCATGGAAGCTCTCTCTCGGTCATTTCGTACCGGTTGTCCTTGG
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGTAAAAACTACATT
CATAAACGATGCTCGGGCATAAAAGGGCGTTTAAGGGAAGATTTTAACTA
TGTTTGTCCTGCTTGTCTAAATCCTGTTGTTGTACCTCCCTCCCCTGTGT
TTTCCATAGACGGTTCAGATCTTGAGGTAGTACCCACATTCTGCTACCTA
GGTGATATGATTGGGGACAATGGAGGCTGTTTTGATGCAATTACCTCAAG
GGTGAAGTCTGCTTGGAGAAAGACTTGGTATTCCATGTATTAAAGACTTA
GTTTCCCAAGGTAGACTTCGTTGGTTCGGTCATGTGCAGCGTATGCACGA
CGACTGTTGGCAAAAAAAGATGCTCACTCATGTAGTGCAAGGGAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAT
CGCATTGCATGGCGTACGGCCATCAAGAGAGGAAGGCGTCCAACCCCAGC
TGCTGGGAACAATGGACGATAAACCGTGCAGTAAGTAAGTAAGTAAGTAC
CCAAGGCTATAGAAAGTGACAATTTAAGATTTTCGACTCATTTCGGATGA
CGGATTGAATCTAGTCATTTTTAAGTTTGTTTTTTTTTTGCCTGGTACAC
AATTTTCGAAATCAAGCGGAAAATGTGTAAATATATAACTATGTAGGAAA
TTAGTGGCTTTGAATCCTACATAGGAGATTCACTTTGTATACTCCTTGGC
TTTTCAGTTGACTCTTTTTAATTCGATGTTCAAAAGACCAAAAATATTAT
TCGAATTAGGGAAAGATTCTAATTACAGCGAGTAGTTTTAACGGCTTTCC
AGCTGAGGGAACCAATATTTTAGAATCAAAAAGAGATTGGAATAATAGAG
GTTCCTGTTAGAAAGAATTTAGTGTACCTCATCAGTTGGTTTGATCATTT
TTTAAACTGCTCTACCCGTTTACACACTCTTCAGGATATGTGGCACCGGT
TACTTTTGACGTCAAAGTTGGTCGCAGTGGATTAGCTTCTCAAGAGGAAC
AACCTCAAAGAGGGCGTGGCTTGTATGGAAATAACTCCTTTCAACGGAGC
AATTTACCGAAGAAAAAACTTGCACCTGTCAATAATATAGGAGGTAATAA
TTTATGAAATGTTATTTAATTCCATTATCAGTTATATGAAAATGCGATAG
CTAGAATGCAGAAACAGAACCTAGCACATCGTGTACCCAAAACAGATAAT
TCCGATAACTTTTTTTCTCAATGGGGATAAAAATTCCTATTGAAATCTCA
ATGGGGATATAAATTTTATTGTTATTGTTTCAAGGTTAAACAATCCAGGC
AGGATGGTTTTGAAATTTATTTTATTTTTTTTTTATTTTTTTAGGCAAAC
ACCCGGTATCGGTATTAGCAGAGAATTGTTCTAAAAGAAAGATGGGGATG
CCAGAATACGAATGTGTGTTCGAAGGTGGTTCATCACACAATAAGACTTT
CCTCATCAAATGCACCATACAAAATGTAGACTATCAACCTTCAGTCGCAT
CTCCAAACAAAAAACACGCCAAAGCTCAGGCTGCAATGACTGCTCTTAAA
ATCCTGGGTTTTGATCAATAATAGGCTTTCTACCACATAATTGTCGCGAA
GAATTGATACACACCTTAAAGCTTAAACTGTTATAAATGCTTTCAATACA
CTCGATGTTTGTCAATTAAAGGCTTATGTAGCCCACACTAGAGAAGAAAC
ACATTCCAAAATACAGATACAGTGGAGTCTCTATAATTCGAACCTCTATA
ACTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029552XLOC_029552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046281-exon-scaffold_108-1575043694:289457..289737TCONS_00046281-exon-scaffold_108-1575043694:289457..289737Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1575043694:287260..288455TCONS_00046281-exon-scaffold_108-1575043694:287260..288455Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1575043694:280912..282056TCONS_00046281-exon-scaffold_108-1575043694:280912..282056Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1575043694:279942..280044TCONS_00046281-exon-scaffold_108-1575043694:279942..280044Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1575043694:275845..276003TCONS_00046281-exon-scaffold_108-1575043694:275845..276003Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1575043694:275181..275593TCONS_00046281-exon-scaffold_108-1575043694:275181..275593Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1510915933:289457..289737TCONS_00046281-exon-scaffold_108-1510915933:289457..289737Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1510915933:287260..288455TCONS_00046281-exon-scaffold_108-1510915933:287260..288455Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1510915933:280912..282056TCONS_00046281-exon-scaffold_108-1510915933:280912..282056Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1510915933:279942..280044TCONS_00046281-exon-scaffold_108-1510915933:279942..280044Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1510915933:275845..276003TCONS_00046281-exon-scaffold_108-1510915933:275845..276003Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1510915933:275181..275593TCONS_00046281-exon-scaffold_108-1510915933:275181..275593Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1491911889:289457..289737TCONS_00046281-exon-scaffold_108-1491911889:289457..289737Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1491911889:287260..288455TCONS_00046281-exon-scaffold_108-1491911889:287260..288455Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1491911889:280912..282056TCONS_00046281-exon-scaffold_108-1491911889:280912..282056Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1491911889:279942..280044TCONS_00046281-exon-scaffold_108-1491911889:279942..280044Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1491911889:275845..276003TCONS_00046281-exon-scaffold_108-1491911889:275845..276003Clytia hemisphaericaexon
TCONS_00046281-exon-scaffold_108-1491911889:275181..275593TCONS_00046281-exon-scaffold_108-1491911889:275181..275593Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:275181..289737 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.608893	0.576559	2.25069	2.21723	0.896444	1.19124	1.28504	1.44576	0.774926	0.81699	0.910892	0.842596	0.657993	0.489802	0.687253	0.735976	0.399223	0.577816	0.583194	0.74111	0.711905	0.805208	0.363305	0.458948	0.701533	0.740178	1.43478	1.42166	0.792627	0.447786
Blast
[Close]
BLAST of TCONS_00046281 vs. Swiss-Prot (Human)
Match: SON (Protein SON OS=Homo sapiens GN=SON PE=1 SV=4)

HSP 1 Score: 134.806 bits (338), Expect = 1.212e-31
Identity = 70/203 (34.48%), Postives = 111/203 (54.68%), Query Frame = 1 
Query: 2398 QPINVSAVIGRRMGAQQRLNANPNDQLARSVLEECDLKLKGWTEKNRKPGKFTGERGV-LMNKKEIAG-AVETWVRKDFFHNLMPVCGGVGMRMLKNMGWKQGTALGKNREGYVAPVTFDVKVGRSGLASQEEQPQRGRGLYGNNSFQRSNLPKKKLAPVNNIGGKHPVSVLAENCSKRKMGMPEYECVFEGGSSHNKTFLIK 3000
            +P+++S  +  R  AQ+RL+ N  D  A S+L     ++  W + N  PG+FTG  GV ++ ++++A    + W++KD F    PV GG+G  +++ MGW++G  LGKN+EG   P+  D K  R GL +  E+ Q+  G +               A + ++ GKHPVS L E C+KR+   PE+  V + G  H K FL +
Sbjct: 2219 EPVDISTAMSERALAQKRLSENAFDLEAMSMLNRAQERIDAWAQLNSIPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNFS--------------AAMKDLSGKHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFR 2407
The following BLAST results are available for this feature:
BLAST of TCONS_00046281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SON1.212e-3134.48Protein SON OS=Homo sapiens GN=SON PE=1 SV=4[more]
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