TCONS_00046284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046284
Unique NameTCONS_00046284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1881

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046284 ID=TCONS_00046284|Name=TCONS_00046284|organism=Clytia hemisphaerica|type=transcript|length=1881bp
ATGGCTGTTTGTGATGGACCACAAGACATTTCtcttatttttacattttt
caaatttaagatAGCAATAAGAAATAATATAGATAATGAGTGAGGAAAAA
GAATCTGGCAATATTTGGCCTGAACTTGACCTAACAGACTCCGAAGATGA
AGAGACCACAACAAAATTAAGCAAAAGGAAAAATATCTTAATCGAATGTG
CACCTGAAGTTACAAAGGAAGAAATTGAAggtgattttccaatgtttttg
AAGAACAAAGATGATGGCCAATCGTCTGATAGTGAAGAGagtgatgaaga
aaaaaaagagGCACCAAAGCCAAAGTTCAATCCCTACTTGGCTCACAACA
CAACCAACAAATTCGACGAGAAATTACGTAATCTTCAGATGAAACGAAAC
GAGGCACGAAAGTTGAATCACAAAGAGGTTGCTGAAGAAGACATGCGTAA
GAAACTACCCAAGAATTATGAAGCCATGAGACGAAAAGCTGAATGGGAGG
TGGCTGATAAACAAGCAAGACAGGAAGCGGAAGAAGCAGGGGAAGACTAC
GAACGAGTCAAGATGCTTGGTGAAACTGCCGAAGATGTTGAGATTACCGA
tcgaagaaaaaggaaaaagaaaaatatggacCCTGGGTTTTCAGATTATG
CTGCAGCACAATTCCGTCAATATGAGAGGTTAACCAAACAGATGAAGGCG
GATGATGACGAATACGAgaggaataaacaaaaaatGGGTGACAATAACTT
TCCATCAGCGCACAATTTAATGTACGGCACCGAAGATAAAGTATCCGAAA
CCGGCATCGATCGTATGGTCAACGATCTTGAGAAACAAATCGAGAAGCGA
TCGAAATTCCACAGACGCCGACAACACTTCGACGAAGCCGACATCGATTA
CATCAACGAAAGCAACGCCAAATTCAATAAGAAGGCTGAACGTTATTACG
GGCAATATACAGAAGAAATCCGACAAAATCTGGAAAGGGGTACTGCTATC
TAAAAGAAGTTCCTTTTATCATCAGAATTCAGAATTTTGTTTATACATAt
tggtcaaaaatgaaaaaaattctgtgGTGGTTGGTTACTGGTACGTGACA
GAGTGACGTTCTCTCGAGATTTCGTATTTTGGTACAACAGAATCCAAAAC
CTGGTACCTACCTATCTATCTAATGAGCTTTCCTTGGTTTGCTTGTAAAA
TTAGAATTACAATTTCTGAAATTCGTTGATGGATTATGACATTAATTGat
caatcttttaaaaatagaagtTTAATTTAATTGGAATGGAGAAAATGCAT
TTTCAGGGTGTTCAGCTGTTTAACAAGCCTTGATAGGAAAAGAAGATGTG
TTGTATCCTGAAATGTTACGATATTTCCTTCGACCATCGTTAATTGGAGT
GATTTCGTTCAATATATTTTTATGACGATGGAAAAAATGACAGTATGGTT
AATACAATGGATAATTTTGAAGCTGAAAAAAATATAGCTGTaatcattat
ttttgaaaatgaaggacCTCACTTAATTATCTCTCGATCTTGTGTCAGCA
ATTTTTAACAAATGCAGAGAGAATGTATTTTTAGGGGGaaaggtcaattt
ttttttgagacaGTAAACACTAGACAgtaaaaaattgttgaaaataaagT
TATTGGAGTAAAATATGGTTTTTAAAAATGAGAGGAACTCAGGTTAGAAG
AGGGCATTCTGTTTTACATTCTAGCGTTTCTACTGCCACCCTGGATTata
aattattatattttaatatttttaaagtatttaaaTTTTATAACAACGAT
GCAATTTTTGTGTCATTTAACATTTCATACCGTgagttgttttgatttgt
tatTCATGGAAAAATAGGACTTGACTACTTA
Run BLAST on NCBI

protein sequence of TCONS_00046284-protein

>TCONS_00046284-protein ID=TCONS_00046284-protein|Name=TCONS_00046284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MSEEKESGNIWPELDLTDSEDEETTTKLSKRKNILIECAPEVTKEEIEGD
FPMFLKNKDDGQSSDSEESDEEKKEAPKPKFNPYLAHNTTNKFDEKLRNL
QMKRNEARKLNHKEVAEEDMRKKLPKNYEAMRRKAEWEVADKQARQEAEE
AGEDYERVKMLGETAEDVEITDRRKRKKKNMDPGFSDYAAAQFRQYERLT
KQMKADDDEYERNKQKMGDNNFPSAHNLMYGTEDKVSETGIDRMVNDLEK
QIEKRSKFHRRRQHFDEADIDYINESNAKFNKKAERYYGQYTEEIRQNLE
RGTAI
Run BLAST on NCBI

transcript from alignment at scaffold_108:290044..293702-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046284 ID=TCONS_00046284|Name=TCONS_00046284|organism=Clytia hemisphaerica|type=transcript|length=3659bp|location=Sequence derived from alignment at scaffold_108:290044..293702- (Clytia hemisphaerica)
ATGGCTGTTTGTGATGGACCACAAGACATTTCTCTTATTTTTACATTTTT
CAAATTTAAGATAGCAATAAGAAATAATATAGATAATGAGTGAGGAAAAA
GAATCTGGCAATATTTGGCCTGAACTTGACCTAACAGACTCCGAAGATGA
AGAGACCACAACAAAATTAAGCAAAAGGAAAAATATCTTAATCGAATGTG
CACCTGAAGTTACAAAGGAAGAAATTGAAGGTGATTTTCCAATGTTTTTG
AAGAACAAAGATGATGGCCAATCGTCTGATAGTGAAGAGAGTGATGAAGA
AAAAAAAGAGGTAAAATTGTTTTGTTATTTAAAAATAATCAAGCTCCTAA
GTTCTTTTTATGTATAAATATCTGCTTCTCTCCTCAACAAAAGGATGAGG
GACTGTAATTTTTGAATTTTCCTCAATTTCTTCATTATAAGGCACCAAAG
CCAAAGTTCAATCCCTACTTGGCTCACAACACAACCAACAAATTCGACGA
GAAATTACGTAATCTTCAGATGAAACGAAACGAGGCACGAAAGTTGAATC
ACAAAGAGGTTGCTGAAGAAGACATGCGTAAGAAACTACCCAAGAATTAT
GAAGCCATGAGACGAAAAGCTGAATGGGAGGTGGCTGATAAACAAGCAAG
ACAGGTAAAGTGGTGTGGTAAACATAAATAAATTACAAAAGACAGGAATA
ATAAGATACTTAATGATTAAAGTCAATGTTTGGCGTAGATATCTAATAAT
CCTGTAATTTTAGATAGTCAATTGTTTTCACGGGGTCCACATTCAAACGT
CTTTGTTCATAGGTACTGAACAAAACATTAGAAAGAGCAATTCCAACTGC
AAACCCCTGGTTTACAGCGCTGTCACCTTGATCATTCGGTCATTGCTACT
TAAATATTTTGGTACTCTCAAGTTACTCTGAAGCGCATAATAACCCACTC
CCCCTACGATTATTGATTTTCAAAGTTGCCTCCTTTATCAGGGACCTGAG
AGCTTTCTGTTTGTTTCTTTAGGAAGCGGAAGAAGCAGGGGAAGACTACG
AACGAGTCAAGATGCTTGGTGAAACTGCCGAAGATGTTGAGATTACCGAT
CGAAGAAAAAGGAAAAAGAAAAATATGGACCCTGGGTTTTCAGGTACGAT
ATCTTAGAGCTAGATTGCAAAAGCGACTCAATCAAATATTAGCTGGGTTC
TTTAAAAGTTTATCCATCCCTGGAAAGACTGACTAGCTTTTGACTAAACC
TTTTGTTTAGGAAACTTTTTGTTCGTTTTTTTACGAAATGCCTGGAAGTT
TATTTATGACTAAAAACATAAAAACTGGGGCTCATTTTTTGTGCTGCAGT
ACAAATGCTAAAACTAGATTTCAACGTAAGAATATAATTTTTTTAACATT
TAAAAATGTTTTTAACATTTTGATTTTTGGAAAATACATATTTATGAATA
TAATTCTTATAATTTTTTAATTAATAAGTGTAATTTTAATAAAATTGGAT
ACTTTTTGCTAATGCTTGTTTGCCATTTTATAGATTATGCTGCAGCACAA
TTCCGTCAATATGAGAGGTTAACCAAACAGATGAAGGCGGATGATGACGA
ATACGAGAGGAATAAACAAAAAATGTACGTAAAGACACATTTTTTTTCAT
GAGTGGATATATTGGTCTTAGTACATCCAAAGTAGAGTTTGGGTCCCCTG
TTTATCAGATTCCTCAAAAAAGTCTTCAAAACTTTCGGCCCAAAGACATA
TTTCAAAATTGATCTACAGTATGGTAAAATCTTCATCGTACATTGTCGTA
ATAGTAACCGGTCTTCATGGTCTCTTCTAGCCTGTGCCACCCCACTTACG
TGCGGCGCAAATTTTAAGGCTTTACATTTTCTTGCTTGGGAAAGGTTAAA
GATTCGCCTCTAACCTTCAGCTTTTAACACAATGGTGCAAACTGTAGTTT
TGTAAGAAAATTGCGGCTGGTCAACCTTTGTATATTTTGTTATTATCACT
CGTCTTGTTTCCAGGGGTGACAATAACTTTCCATCAGCGCACAATTTAAT
GTACGGCACCGAAGATAAAGTATCCGAAACCGGCATCGATCGTATGGTCA
ACGATCTTGAGAAACAGTAAGTGAAACGAATTCTTTTTCTTCCTTTCTAA
CATATTATTTGGAATTACAGTTAACGCTCTCTAATTCGACGTTCTTCTAT
TCGATAAGCTCCCATATTCGATGAAAATCCAATTCCCCTTGAAGATCGAA
TTAGAGAGCGTCAACTGTATATACTTCCGACTATCTTGCAAAAGGGATCT
GTTTCTCCCAACATACAGTCGACGCTAGTTCAAATCTAAAGGGGAATCGG
ATTTTTTTCTGGAGCGTATCAGATAGTGAGAAGTGTTCTTAAACCTATGA
ACTGACTTTCAATTTCTTCGAAGCCGAGAGTTTTTTGAGAAAAAGAACTG
TATCTTTTCGAAAGTTTTCTACCCAATTAGTTACAAAAGATTCAAGATAT
TCTAAAATATTTTCACGACCAAATGTATTTCTGAGTACTCAAAGTTTGGT
TGTTTGTTGATCCTTAAAAGTTTGATAACAACCTTCTCAAGTCTTCCTCG
TTGTCTCCTTTTTAGAATCGAGAAGCGATCGAAATTCCACAGACGCCGAC
AACACTTCGACGAAGCCGACATCGATTACATCAACGAAAGCAACGCCAAA
TTCAATAAGAAGGCTGAACGTTATTACGGGCAATATACAGAAGAAATCCG
ACAAAATCTGGAAAGGGGTACTGCTATCTAAAAGAAGTTCCTTTTATCAT
CAGAATTCAGAATTTTGTTTATACATATTGGTCAAAAATGAAAAAAATTC
TGTGGTGGTTGGTTACTGGTACGTGACAGAGTGACGTTCTCTCGAGATTT
CGTATTTTGGTACAACAGAATCCAAAACCTGGTACCTACCTATCTATCTA
ATGAGCTTTCCTTGGTTTGCTTGTAAAATTAGAATTACAATTTCTGAAAT
TCGTTGATGGATTATGACATTAATTGATCAATCTTTTAAAAATAGAAGTT
TAATTTAATTGGAATGGAGAAAATGCATTTTCAGGGTGTTCAGCTGTTTA
ACAAGCCTTGATAGGAAAAGAAGATGTGTTGTATCCTGAAATGTTACGAT
ATTTCCTTCGACCATCGTTAATTGGAGTGATTTCGTTCAATATATTTTTA
TGACGATGGAAAAAATGACAGTATGGTTAATACAATGGATAATTTTGAAG
CTGAAAAAAATATAGCTGTAATCATTATTTTTGAAAATGAAGGACCTCAC
TTAATTATCTCTCGATCTTGTGTCAGCAATTTTTAACAAATGCAGAGAGA
ATGTATTTTTAGGGGGAAAGGTCAATTTTTTTTTGAGACAGTAAACACTA
GACAGTAAAAAATTGTTGAAAATAAAGTTATTGGAGTAAAATATGGTTTT
TAAAAATGAGAGGAACTCAGGTTAGAAGAGGGCATTCTGTTTTACATTCT
AGCGTTTCTACTGCCACCCTGGATTATAAATTATTATATTTTAATATTTT
TAAAGTATTTAAATTTTATAACAACGATGCAATTTTTGTGTCATTTAACA
TTTCATACCGTGAGTTGTTTTGATTTGTTATTCATGGAAAAATAGGACTT
GACTACTTA

Coding sequence (CDS) from alignment at scaffold_108:290044..293702-

>TCONS_00046284 ID=TCONS_00046284|Name=TCONS_00046284|organism=Clytia hemisphaerica|type=CDS|length=5508bp|location=Sequence derived from alignment at scaffold_108:290044..293702- (Clytia hemisphaerica)
AATCGAGAAGCGATCGAAATTCCACAGACGCCGACAACACTTCGACGAAG
CCGACATCGATTACATCAACGAAAGCAACGCCAAATTCAATAAGAAGGCT
GAACGTTATTACGGGCAATATACAGAAGAAATCCGACAAAATCTGGAAAG
GGGTACTGCTATCTAAGGGTGACAATAACTTTCCATCAGCGCACAATTTA
ATGTACGGCACCGAAGATAAAGTATCCGAAACCGGCATCGATCGTATGGT
CAACGATCTTGAGAAACAATTATGCTGCAGCACAATTCCGTCAATATGAG
AGGTTAACCAAACAGATGAAGGCGGATGATGACGAATACGAGAGGAATAA
ACAAAAAATGAAGCGGAAGAAGCAGGGGAAGACTACGAACGAGTCAAGAT
GCTTGGTGAAACTGCCGAAGATGTTGAGATTACCGATCGAAGAAAAAGGA
AAAAGAAAAATATGGACCCTGGGTTTTCAGGCACCAAAGCCAAAGTTCAA
TCCCTACTTGGCTCACAACACAACCAACAAATTCGACGAGAAATTACGTA
ATCTTCAGATGAAACGAAACGAGGCACGAAAGTTGAATCACAAAGAGGTT
GCTGAAGAAGACATGCGTAAGAAACTACCCAAGAATTATGAAGCCATGAG
ACGAAAAGCTGAATGGGAGGTGGCTGATAAACAAGCAAGACAGATGAGTG
AGGAAAAAGAATCTGGCAATATTTGGCCTGAACTTGACCTAACAGACTCC
GAAGATGAAGAGACCACAACAAAATTAAGCAAAAGGAAAAATATCTTAAT
CGAATGTGCACCTGAAGTTACAAAGGAAGAAATTGAAGGTGATTTTCCAA
TGTTTTTGAAGAACAAAGATGATGGCCAATCGTCTGATAGTGAAGAGAGT
GATGAAGAAAAAAAAGAGAATCGAGAAGCGATCGAAATTCCACAGACGCC
GACAACACTTCGACGAAGCCGACATCGATTACATCAACGAAAGCAACGCC
AAATTCAATAAGAAGGCTGAACGTTATTACGGGCAATATACAGAAGAAAT
CCGACAAAATCTGGAAAGGGGTACTGCTATCTAAGGGTGACAATAACTTT
CCATCAGCGCACAATTTAATGTACGGCACCGAAGATAAAGTATCCGAAAC
CGGCATCGATCGTATGGTCAACGATCTTGAGAAACAATTATGCTGCAGCA
CAATTCCGTCAATATGAGAGGTTAACCAAACAGATGAAGGCGGATGATGA
CGAATACGAGAGGAATAAACAAAAAATGAAGCGGAAGAAGCAGGGGAAGA
CTACGAACGAGTCAAGATGCTTGGTGAAACTGCCGAAGATGTTGAGATTA
CCGATCGAAGAAAAAGGAAAAAGAAAAATATGGACCCTGGGTTTTCAGGC
ACCAAAGCCAAAGTTCAATCCCTACTTGGCTCACAACACAACCAACAAAT
TCGACGAGAAATTACGTAATCTTCAGATGAAACGAAACGAGGCACGAAAG
TTGAATCACAAAGAGGTTGCTGAAGAAGACATGCGTAAGAAACTACCCAA
GAATTATGAAGCCATGAGACGAAAAGCTGAATGGGAGGTGGCTGATAAAC
AAGCAAGACAGATGAGTGAGGAAAAAGAATCTGGCAATATTTGGCCTGAA
CTTGACCTAACAGACTCCGAAGATGAAGAGACCACAACAAAATTAAGCAA
AAGGAAAAATATCTTAATCGAATGTGCACCTGAAGTTACAAAGGAAGAAA
TTGAAGGTGATTTTCCAATGTTTTTGAAGAACAAAGATGATGGCCAATCG
TCTGATAGTGAAGAGAGTGATGAAGAAAAAAAAGAGAATCGAGAAGCGAT
CGAAATTCCACAGACGCCGACAACACTTCGACGAAGCCGACATCGATTAC
ATCAACGAAAGCAACGCCAAATTCAATAAGAAGGCTGAACGTTATTACGG
GCAATATACAGAAGAAATCCGACAAAATCTGGAAAGGGGTACTGCTATCT
AAGGGTGACAATAACTTTCCATCAGCGCACAATTTAATGTACGGCACCGA
AGATAAAGTATCCGAAACCGGCATCGATCGTATGGTCAACGATCTTGAGA
AACAATTATGCTGCAGCACAATTCCGTCAATATGAGAGGTTAACCAAACA
GATGAAGGCGGATGATGACGAATACGAGAGGAATAAACAAAAAATGAAGC
GGAAGAAGCAGGGGAAGACTACGAACGAGTCAAGATGCTTGGTGAAACTG
CCGAAGATGTTGAGATTACCGATCGAAGAAAAAGGAAAAAGAAAAATATG
GACCCTGGGTTTTCAGGCACCAAAGCCAAAGTTCAATCCCTACTTGGCTC
ACAACACAACCAACAAATTCGACGAGAAATTACGTAATCTTCAGATGAAA
CGAAACGAGGCACGAAAGTTGAATCACAAAGAGGTTGCTGAAGAAGACAT
GCGTAAGAAACTACCCAAGAATTATGAAGCCATGAGACGAAAAGCTGAAT
GGGAGGTGGCTGATAAACAAGCAAGACAGATGAGTGAGGAAAAAGAATCT
GGCAATATTTGGCCTGAACTTGACCTAACAGACTCCGAAGATGAAGAGAC
CACAACAAAATTAAGCAAAAGGAAAAATATCTTAATCGAATGTGCACCTG
AAGTTACAAAGGAAGAAATTGAAGGTGATTTTCCAATGTTTTTGAAGAAC
AAAGATGATGGCCAATCGTCTGATAGTGAAGAGAGTGATGAAGAAAAAAA
AGAGAATCGAGAAGCGATCGAAATTCCACAGACGCCGACAACACTTCGAC
GAAGCCGACATCGATTACATCAACGAAAGCAACGCCAAATTCAATAAGAA
GGCTGAACGTTATTACGGGCAATATACAGAAGAAATCCGACAAAATCTGG
AAAGGGGTACTGCTATCTAAGGGTGACAATAACTTTCCATCAGCGCACAA
TTTAATGTACGGCACCGAAGATAAAGTATCCGAAACCGGCATCGATCGTA
TGGTCAACGATCTTGAGAAACAATTATGCTGCAGCACAATTCCGTCAATA
TGAGAGGTTAACCAAACAGATGAAGGCGGATGATGACGAATACGAGAGGA
ATAAACAAAAAATGAAGCGGAAGAAGCAGGGGAAGACTACGAACGAGTCA
AGATGCTTGGTGAAACTGCCGAAGATGTTGAGATTACCGATCGAAGAAAA
AGGAAAAAGAAAAATATGGACCCTGGGTTTTCAGGCACCAAAGCCAAAGT
TCAATCCCTACTTGGCTCACAACACAACCAACAAATTCGACGAGAAATTA
CGTAATCTTCAGATGAAACGAAACGAGGCACGAAAGTTGAATCACAAAGA
GGTTGCTGAAGAAGACATGCGTAAGAAACTACCCAAGAATTATGAAGCCA
TGAGACGAAAAGCTGAATGGGAGGTGGCTGATAAACAAGCAAGACAGATG
AGTGAGGAAAAAGAATCTGGCAATATTTGGCCTGAACTTGACCTAACAGA
CTCCGAAGATGAAGAGACCACAACAAAATTAAGCAAAAGGAAAAATATCT
TAATCGAATGTGCACCTGAAGTTACAAAGGAAGAAATTGAAGGTGATTTT
CCAATGTTTTTGAAGAACAAAGATGATGGCCAATCGTCTGATAGTGAAGA
GAGTGATGAAGAAAAAAAAGAGAATCGAGAAGCGATCGAAATTCCACAGA
CGCCGACAACACTTCGACGAAGCCGACATCGATTACATCAACGAAAGCAA
CGCCAAATTCAATAAGAAGGCTGAACGTTATTACGGGCAATATACAGAAG
AAATCCGACAAAATCTGGAAAGGGGTACTGCTATCTAAGGGTGACAATAA
CTTTCCATCAGCGCACAATTTAATGTACGGCACCGAAGATAAAGTATCCG
AAACCGGCATCGATCGTATGGTCAACGATCTTGAGAAACAATTATGCTGC
AGCACAATTCCGTCAATATGAGAGGTTAACCAAACAGATGAAGGCGGATG
ATGACGAATACGAGAGGAATAAACAAAAAATGAAGCGGAAGAAGCAGGGG
AAGACTACGAACGAGTCAAGATGCTTGGTGAAACTGCCGAAGATGTTGAG
ATTACCGATCGAAGAAAAAGGAAAAAGAAAAATATGGACCCTGGGTTTTC
AGGCACCAAAGCCAAAGTTCAATCCCTACTTGGCTCACAACACAACCAAC
AAATTCGACGAGAAATTACGTAATCTTCAGATGAAACGAAACGAGGCACG
AAAGTTGAATCACAAAGAGGTTGCTGAAGAAGACATGCGTAAGAAACTAC
CCAAGAATTATGAAGCCATGAGACGAAAAGCTGAATGGGAGGTGGCTGAT
AAACAAGCAAGACAGATGAGTGAGGAAAAAGAATCTGGCAATATTTGGCC
TGAACTTGACCTAACAGACTCCGAAGATGAAGAGACCACAACAAAATTAA
GCAAAAGGAAAAATATCTTAATCGAATGTGCACCTGAAGTTACAAAGGAA
GAAATTGAAGGTGATTTTCCAATGTTTTTGAAGAACAAAGATGATGGCCA
ATCGTCTGATAGTGAAGAGAGTGATGAAGAAAAAAAAGAGAATCGAGAAG
CGATCGAAATTCCACAGACGCCGACAACACTTCGACGAAGCCGACATCGA
TTACATCAACGAAAGCAACGCCAAATTCAATAAGAAGGCTGAACGTTATT
ACGGGCAATATACAGAAGAAATCCGACAAAATCTGGAAAGGGGTACTGCT
ATCTAAGGGTGACAATAACTTTCCATCAGCGCACAATTTAATGTACGGCA
CCGAAGATAAAGTATCCGAAACCGGCATCGATCGTATGGTCAACGATCTT
GAGAAACAATTATGCTGCAGCACAATTCCGTCAATATGAGAGGTTAACCA
AACAGATGAAGGCGGATGATGACGAATACGAGAGGAATAAACAAAAAATG
AAGCGGAAGAAGCAGGGGAAGACTACGAACGAGTCAAGATGCTTGGTGAA
ACTGCCGAAGATGTTGAGATTACCGATCGAAGAAAAAGGAAAAAGAAAAA
TATGGACCCTGGGTTTTCAGGCACCAAAGCCAAAGTTCAATCCCTACTTG
GCTCACAACACAACCAACAAATTCGACGAGAAATTACGTAATCTTCAGAT
GAAACGAAACGAGGCACGAAAGTTGAATCACAAAGAGGTTGCTGAAGAAG
ACATGCGTAAGAAACTACCCAAGAATTATGAAGCCATGAGACGAAAAGCT
GAATGGGAGGTGGCTGATAAACAAGCAAGACAGATGAGTGAGGAAAAAGA
ATCTGGCAATATTTGGCCTGAACTTGACCTAACAGACTCCGAAGATGAAG
AGACCACAACAAAATTAAGCAAAAGGAAAAATATCTTAATCGAATGTGCA
CCTGAAGTTACAAAGGAAGAAATTGAAGGTGATTTTCCAATGTTTTTGAA
GAACAAAGATGATGGCCAATCGTCTGATAGTGAAGAGAGTGATGAAGAAA
AAAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029553XLOC_029553Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046284-proteinTCONS_00046284-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046284-exon-scaffold_108-1575043694:293393..293702TCONS_00046284-exon-scaffold_108-1575043694:293393..293702Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1575043694:293049..293261TCONS_00046284-exon-scaffold_108-1575043694:293049..293261Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1575043694:292560..292680TCONS_00046284-exon-scaffold_108-1575043694:292560..292680Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1575043694:292079..292169TCONS_00046284-exon-scaffold_108-1575043694:292079..292169Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1575043694:291587..291688TCONS_00046284-exon-scaffold_108-1575043694:291587..291688Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1575043694:290044..291087TCONS_00046284-exon-scaffold_108-1575043694:290044..291087Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1510915933:293393..293702TCONS_00046284-exon-scaffold_108-1510915933:293393..293702Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1510915933:293049..293261TCONS_00046284-exon-scaffold_108-1510915933:293049..293261Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1510915933:292560..292680TCONS_00046284-exon-scaffold_108-1510915933:292560..292680Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1510915933:292079..292169TCONS_00046284-exon-scaffold_108-1510915933:292079..292169Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1510915933:291587..291688TCONS_00046284-exon-scaffold_108-1510915933:291587..291688Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1510915933:290044..291087TCONS_00046284-exon-scaffold_108-1510915933:290044..291087Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1491911889:293393..293702TCONS_00046284-exon-scaffold_108-1491911889:293393..293702Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1491911889:293049..293261TCONS_00046284-exon-scaffold_108-1491911889:293049..293261Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1491911889:292560..292680TCONS_00046284-exon-scaffold_108-1491911889:292560..292680Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1491911889:292079..292169TCONS_00046284-exon-scaffold_108-1491911889:292079..292169Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1491911889:291587..291688TCONS_00046284-exon-scaffold_108-1491911889:291587..291688Clytia hemisphaericaexon
TCONS_00046284-exon-scaffold_108-1491911889:290044..291087TCONS_00046284-exon-scaffold_108-1491911889:290044..291087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:290044..293702 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.7204	16.4291	6.65491	4.93598	60.5772	42.3517	47.631	49.6228	37.0308	36.655	34.5034	28.9838	24.3431	23.6391	19.784	23.688	28.9427	26.2694	18.0222	21.8094	27.5318	25.3371	35.35	34.4165	24.4219	28.9529	24.9054	19.9658	29.3683	32.729
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013260mRNA_splic_SYF2
Blast
[Close]
BLAST of TCONS_00046284 vs. Swiss-Prot (Human)
Match: SYF2 (Pre-mRNA-splicing factor SYF2 OS=Homo sapiens GN=SYF2 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.582e-69
Identity = 127/210 (60.48%), Postives = 163/210 (77.62%), Query Frame = 2 
Query:  371 KLRNLQMKRNEARKLNHKEVAEEDMRKKLPKNYEAMRRKAEWEVADKQARQEAEEAGEDYERVKMLGETAEDVEITDRRKRKKKNMDPGFSDYAAAQFRQYERLTKQMKADDDEYERNKQKMGDNNFPSAHNLMYGTEDKVSETGIDRMVNDLEKQIEKRSKFHRRRQHFDEADIDYINESNAKFNKKAERYYGQYTEEIRQNLERGTAI 1000
            K R L + RNEARKLNH+EV EED R KLP N+EA + + EWE+ +++ ++E    GEDYE+VK+L  +AED E  +R+K K+KN D GFSDYAAAQ RQY RLTKQ+K D + YER ++K G+  FP++++L++GT    +E  IDRMV DLEKQIEKR K+ RRR + D+ADIDYINE NAKFNKKAER+YG+YT EI+QNLERGTA+
Sbjct:   36 KFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELKEEEKKKECAARGEDYEKVKLLEISAEDAERWERKK-KRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243
The following BLAST results are available for this feature:
BLAST of TCONS_00046284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYF21.582e-6960.48Pre-mRNA-splicing factor SYF2 OS=Homo sapiens GN=S... [more]
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