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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046285 ID=TCONS_00046285|Name=TCONS_00046285|organism=Clytia hemisphaerica|type=transcript|length=1954bpRun BLAST on NCBI protein sequence of TCONS_00046285-protein >TCONS_00046285-protein ID=TCONS_00046285-protein|Name=TCONS_00046285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp MSGLNVIKSPIYEWSKAFGEKNIGEVSTTANDKADGNDSEDPIPSISKAIRun BLAST on NCBI transcript from alignment at scaffold_108:348530..353434- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046285 ID=TCONS_00046285|Name=TCONS_00046285|organism=Clytia hemisphaerica|type=transcript|length=4905bp|location=Sequence derived from alignment at scaffold_108:348530..353434- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_108:348530..353434- >TCONS_00046285 ID=TCONS_00046285|Name=TCONS_00046285|organism=Clytia hemisphaerica|type=CDS|length=6684bp|location=Sequence derived from alignment at scaffold_108:348530..353434- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046285 vs. Swiss-Prot (Human)
Match: ZN679 (Zinc finger protein 679 OS=Homo sapiens GN=ZNF679 PE=1 SV=2) HSP 1 Score: 143.28 bits (360), Expect = 5.386e-37 Identity = 73/143 (51.05%), Postives = 94/143 (65.73%), Query Frame = 3
Query: 1362 YRRRNNEEAPQYQCQYCGKEFTRMFTLQTHQRVHSGDKPYVCEICGKAFRQSGTKLNHMRAVHAKEKPYKCDFCPKSFGHKSSLTVHRRIHTNEKPYTCEICGRRFTDRATMKKHMPTHTKEKNHQCEYCGKRLTQHSNLKRH 1790
++R + E P Y+C+ CGK FT TL H+R+H+G+KPY CE CG+AF +S T NH R +H EKPY C+ C K+F SSLT H+RIHT EKPYTCE CG+ F +T+KKH HT EK ++C+ CGK S L H
Sbjct: 230 HKRIHTGEKP-YRCEECGKAFTWSSTLTKHRRIHTGEKPYTCEECGQAFSRSSTLANHKR-IHTGEKPYTCEECGKAFSLSSSLTYHKRIHTGEKPYTCEECGKAFNCSSTLKKHKIIHTGEKPYKCKECGKAFAFSSTLNTH 370 HSP 2 Score: 124.02 bits (310), Expect = 2.409e-30 Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 3
Query: 1362 YRRRNNEEAPQYQCQYCGKEFTRMFTLQTHQRVHSGDKPYVCEICGKAFRQSGTKLNHMRAVHAKEKPYKCDFCPKSFGHKSSLTVHRRIHTNEKPYTCEICGRRFTDRATMKKHMPTHTKEKNHQCEYCGKRLTQHSNLKRH 1790
+RR + E P Y C+ CG+ F+R TL H+R+H+G+KPY CE CGKAF S + H R +H EKPY C+ C K+F S+L H+ IHT EKPY C+ CG+ F +T+ H HT E+ ++CE C K S+L H
Sbjct: 258 HRRIHTGEKP-YTCEECGQAFSRSSTLANHKRIHTGEKPYTCEECGKAFSLSSSLTYHKR-IHTGEKPYTCEECGKAFNCSSTLKKHKIIHTGEKPYKCKECGKAFAFSSTLNTHKRIHTGEEPYKCEECDKAFKWSSSLANH 398 HSP 3 Score: 117.087 bits (292), Expect = 5.512e-28 Identity = 61/132 (46.21%), Postives = 80/132 (60.61%), Query Frame = 3
Query: 1395 YQCQYCGKEFTRMFTLQTHQRVHSGDKPYVCEICGKAFRQSGTKLNHMRAVHAKEKPYKCDFCPKSFGHKSSLTVHRRIHTNEKPYTCEICGRRFTDRATMKKHMPTHTKEKNHQCEYCGKRLTQHSNLKRH 1790
++C+ GK F + L HQ +H+ + Y CE CGK F S T H R +H EKPY+C+ C K+F S+LT HRRIHT EKPYTCE CG+ F+ +T+ H HT EK + CE CGK + S+L H
Sbjct: 184 FKCKKYGKSFCMVSQLHQHQIIHTRENSYQCEECGKPFNCSSTLSKHKR-IHTGEKPYRCEECGKAFTWSSTLTKHRRIHTGEKPYTCEECGQAFSRSSTLANHKRIHTGEKPYTCEECGKAFSLSSSLTYH 314 HSP 4 Score: 116.701 bits (291), Expect = 6.562e-28 Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = 3
Query: 1362 YRRRNNEEAPQYQCQYCGKEFTRMFTLQTHQRVHSGDKPYVCEICGKAFRQSGTKLNHMRAVHAKEKPYKCDFCPKSFGHKSSLTVHRRIHTNEKPYTCEICGRRFTDRATMKKHMPTHTKEKNHQCE 1745
++R + E P Y C+ CGK F+ +L H+R+H+G+KPY CE CGKAF S T H + +H EKPYKC C K+F S+L H+RIHT E+PY CE C + F +++ H HT EK ++CE
Sbjct: 286 HKRIHTGEKP-YTCEECGKAFSLSSSLTYHKRIHTGEKPYTCEECGKAFNCSSTLKKH-KIIHTGEKPYKCKECGKAFAFSSTLNTHKRIHTGEEPYKCEECDKAFKWSSSLANHKSMHTGEKPYKCE 411 HSP 5 Score: 95.1301 bits (235), Expect = 8.361e-21 Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 3
Query: 1359 TYRRRNNEEAPQYQCQYCGKEFTRMFTLQTHQRVHSGDKPYVCEICGKAFRQSGTKLNHMRAVHAKEKPYKCDFCPKSFGHKSSLTVHRRIHTNEKPYTCE 1661
TY +R + Y C+ CGK F TL+ H+ +H+G+KPY C+ CGKAF S T LN + +H E+PYKC+ C K+F SSL H+ +HT EKPY CE
Sbjct: 312 TYHKRIHTGEKPYTCEECGKAFNCSSTLKKHKIIHTGEKPYKCKECGKAFAFSST-LNTHKRIHTGEEPYKCEECDKAFKWSSSLANHKSMHTGEKPYKCE 411 The following BLAST results are available for this feature:
BLAST of TCONS_00046285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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