TCONS_00046323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046323
Unique NameTCONS_00046323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046323 ID=TCONS_00046323|Name=TCONS_00046323|organism=Clytia hemisphaerica|type=transcript|length=829bp
ctaagttgaaaataaattttcattactttaacTACGATATATAGAGttta
tatatgtgaagaaattcataaaatttctgtccaactatcttctttcagga
ggttggatggcagagcagcatatgcatttcgtccttattaggacttgTCA
GCACTGCAAACTGCACCCTGGCTAGGTAGATCGAATTGTCTAGCATCTCA
CGCCATAAAACTAATTGTGGCGCAGACTGAAAGAAGAAGTATATATAATC
GTTTTCCATCAGAACTTGATAAACTAGAATAAAAGATCTACATGGCAATA
tagtaaattaaaattgaagtaTAATAATGAAACATGTTAAGTTCATTTTA
GCTAAAGCtatttttcgctgattttcgttCATTAATTACTTGACTTGAGA
TAAGTTGCAAGAGCGCTTAGAAAGAAAGCGAAGATTGTTCCAATCCATCC
TAAGATAAAACACCATCCCCAACTATTATTGTCCGTTACAACAATTTCCC
TGCCATCGTCACTATAGATTGCAACTGCTACCAACATACAAAAACCAGCG
CCTAAAAACAAAACAGTGACAGCCTTGCcattcatatctttaaataagcG
AATAAGTGAGACGAGGGTGCCAATACCAGCCAATACAACGGAAATGATTG
CGAAAGCACGGATTGCGTGAAATCTGCTTGAAATATCTCCCCATTTCCTC
GTGGTGCAAACTTCGGTATTTTTCTTACAATATCTCCACAAACCAAGCCG
ATATCCATAAGTTATAAACCAGTCATCGCCACCTACAGAAgctgccaaca
aaacaaaagtGCTAACGGCAAACACCAAA
Run BLAST on NCBI

protein sequence of TCONS_00046323-protein

>TCONS_00046323-protein ID=TCONS_00046323-protein|Name=TCONS_00046323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
LVFAVSTFVLLAASVGGDDWFITYGYRLGLWRYCKKNTEVCTTRKWGDIS
SRFHAIRAFAIISVVLAGIGTLVSLIRLFKDMNGKAVTVLFLGAGFCMLV
AVAIYSDDGREIVVTDNNSWGWCFILGWIGTIFAFFLSALATYLKSSN
Run BLAST on NCBI

transcript from alignment at scaffold_108:80820..81648

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046323 ID=TCONS_00046323|Name=TCONS_00046323|organism=Clytia hemisphaerica|type=transcript|length=829bp|location=Sequence derived from alignment at scaffold_108:80820..81648 (Clytia hemisphaerica)
TTTGGTGTTTGCCGTTAGCacttttgttttgttggcagcTTCTGTAGGTG
GCGATGACTGGTTTATAACTTATGGATATCGGCTTGGTTTGTGGAGATAT
TGTAAGAAAAATACCGAAGTTTGCACCACGAGGAAATGGGGAGATATTTC
AAGCAGATTTCACGCAATCCGTGCTTTCGCAATCATTTCCGTTGTATTGG
CTGGTATTGGCACCCTCGTCTCACTTATTCgcttatttaaagatatgaat
gGCAAGGCTGTCACTGTTTTGTTTTTAGGCGCTGGTTTTTGTATGTTGGT
AGCAGTTGCAATCTATAGTGACGATGGCAGGGAAATTGTTGTAACGGACA
ATAATAGTTGGGGATGGTGTTTTATCTTAGGATGGATTGGAACAATCTTC
GCTTTCTTTCTAAGCGCTCTTGCAACTTATCTCAAGTCAAGTAATTAATG
aacgaaaatcagcgaaaaataGCTTTAGCTAAAATGAACTTAACATGTTT
CATTATTAtacttcaattttaatttactaTATTGCCATGTAGATCTTTTA
TTCTAGTTTATCAAGTTCTGATGGAAAACGATTATATATACTTCTTCTTT
CAGTCTGCGCCACAATTAGTTTTATGGCGTGAGATGCTAGACAATTCGAT
CTACCTAGCCAGGGTGCAGTTTGCAGTGCTGAcaagtcctaataaggacg
aaatgcatatgctgctctgccatccaacctcctgaaagaagatagttgga
cagaaattttatgaatttcttcacatatataaaCTCTATATATCGTAgtt
aaagtaatgaaaatttattttcaacttag

Coding sequence (CDS) from alignment at scaffold_108:80820..81648

>TCONS_00046323 ID=TCONS_00046323|Name=TCONS_00046323|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_108:80820..81648 (Clytia hemisphaerica)
TTGGTGTTTGCCGTTAGCacttttgttttgttggcagcTTCTGTAGGTGG
CGATGACTGGTTTATAACTTATGGATATCGGCTTGGTTTGTGGAGATATT
GTAAGAAAAATACCGAAGTTTGCACCACGAGGAAATGGGGAGATATTTCA
AGCAGATTTCACGCAATCCGTGCTTTCGCAATCATTTCCGTTGTATTGGC
TGGTATTGGCACCCTCGTCTCACTTATTCgcttatttaaagatatgaatg
GCAAGGCTGTCACTGTTTTGTTTTTAGGCGCTGGTTTTTGTATGTTGGTA
GCAGTTGCAATCTATAGTGACGATGGCAGGGAAATTGTTGTAACGGACAA
TAATAGTTGGGGATGGTGTTTTATCTTAGGATGGATTGGAACAATCTTCG
CTTTCTTTCTAAGCGCTCTTGCAACTTATCTCAAGTCAAGTAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029573XLOC_029573Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046323-proteinTCONS_00046323-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046323-exon-scaffold_108-1491911889:80820..81648TCONS_00046323-exon-scaffold_108-1491911889:80820..81648Clytia hemisphaericaexon
TCONS_00046323-exon-scaffold_108-1510915933:80820..81648TCONS_00046323-exon-scaffold_108-1510915933:80820..81648Clytia hemisphaericaexon
TCONS_00046323-exon-scaffold_108-1575043694:80820..81648TCONS_00046323-exon-scaffold_108-1575043694:80820..81648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:80820..81648 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.343333	0.167402	0.735575	0.791311	0.47087	0.372678	3.3467	2.63177	2.99076	2.63789	0.92758	2.41627	12.9941	18.3563	8.36854	7.75433	16.3322	31.6776	30.0368	28.0481	19.5157	17.5574	3.17489	2.62455	2.01811	1.77158	0.863092	1.36445	3.30263	3.141
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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