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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046342 ID=TCONS_00046342|Name=TCONS_00046342|organism=Clytia hemisphaerica|type=transcript|length=884bp
TAGTACATGGTTCGTTGGATTCTCATCTGACGGATGCAAACTTAATAGAT
ATGGTTTTGTTTGGAGGAAGGAAATCTCAATATTTGTTATTGTTATTACT
GAGTATTGTACGCATAAATGCTTCAAAATGCTGGCAAAAGattccaGAGA
ACAATCACGGCATACAGCCAACCACTATAGTGAATGAAGCCGAAGATCTA
CAGCCaaacaatttactttttttcattcCAATTCTATCCAATGAATGGAT
CGTACAATTACATTTCAAACTTCTTGCCGAGCATGCTGGTGGAAGCAATT
GGTGTAATATAATACATGTCACAAAGGGTCAAAACAATATTGCTTACGGA
GATCGAACACCAGCCATCTTCTTTAATAaggCAACTTCGCTGCTAAGTAT
AGGATCGGCAGTGAATGGCAGCAAAAATTACGCTCGGTATCTAACTGTCC
AATACAACACCGAATACAATGTGGAGATTCACCAGCGATACAAAAGTGGA
GGTGTTTACAAATATTCCATCCTTCTCAATGGAGAAGAAATTCACTCAAT
AGATAATACACAAGCTCAACAATTTTATGACATGAAAGTTTACATTTCCG
ATCCTTGGTTCCCGGCATGCAATGGTTGGATTAAACATGTCAAAATTACt
aactttttgtaattttttatttattaaagaTCTTAAGGAACTTTTTTAGT
ACCTTAAAGATGGATATTTTGAGACAAATTTAATTCTAGCAgatggttga
aaaagttttttcgtagCAAATTTAATTGGTGGTTATAGGGTAATATTTCT
TGCTAAAAATCGTTATTCTaagacaaaaaagtaaaatcaaattATGAAAA
GAACTTTAAGCTTAACCAACTTAGAATTTTATAG Run BLAST on NCBI protein sequence of TCONS_00046342-protein >TCONS_00046342-protein ID=TCONS_00046342-protein|Name=TCONS_00046342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
VHGSLDSHLTDANLIDMVLFGGRKSQYLLLLLLSIVRINASKCWQKIPEN
NHGIQPTTIVNEAEDLQPNNLLFFIPILSNEWIVQLHFKLLAEHAGGSNW
CNIIHVTKGQNNIAYGDRTPAIFFNKATSLLSIGSAVNGSKNYARYLTVQ
YNTEYNVEIHQRYKSGGVYKYSILLNGEEIHSIDNTQAQQFYDMKVYISD
PWFPACNGWIKHVKITNFL Run BLAST on NCBI transcript from alignment at scaffold_109:1483..4850+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046342 ID=TCONS_00046342|Name=TCONS_00046342|organism=Clytia hemisphaerica|type=transcript|length=3368bp|location=Sequence derived from alignment at scaffold_109:1483..4850+ (Clytia hemisphaerica)
TAGTACATGGTTCGTTGGATTCTCATCTGACGGATGCAAACTTAATAGAT
ATGGTTTTGTTTGGAGGAAGGAAATCTCAATATTTGTTATTGTTATTACT
GAGTATTGTACGCATAAATGCTTCAAAATGCTGGCAAAAGGTAAGGAAAG
TGTTTTAGAGTTTGAATAAAGACTCTATCTAGCCCAGATGGCTTTTTGAT
TGGGTGACGGCGATTAAGTAGCTCGGTATATGAGAGACCTCACCTCAGTT
TTTAGCTTTTGCGCCTGCGGACTGAAAAAAAGATTGTAGTTGTTTTGCGA
ATATAAAAGATTCATGTGGCAATGTTTATGTTTGAAAAGAGGGTATTGCT
AATCCTTTTTTGATGttcctttttcgttttttatcaTACCTGGGGAGGGA
ATTCCTTCGATTCCAAAACGTGCAgtgctttttcaaaaatggaaaaactt
tCGGTTTTCGAGGATCCTGTTCGCACTTCCTCATCAtctgccaaccctag
tacccccctggTTTATTTATCTGATAAAGATTTGCATATTCACTCGATTC
AACTATGTTCGAAATTTGATTTTAGTccataataaaataattttttcctt
caaaaacacaaaaaaagtgGAGTGAAGaagttcaattttattttttttca
gattccaGAGAACAATCACGGCATACAGCCAACCACTATAGTGAATGAAG
GTAAGTATTTTTTATATCAATACGTCCTTTTTCTAACGAAGACCCTCAAA
AAACCGGAGTTTGCCTACTGTCTGTTACGTAGTGAAACATAGTGGTCAAA
ATCCCGCTTTTTCGGGTGCTTCCGCTAGAAAACATGAAATTAACCAagtg
atttttgtaaaatcaagGCTCAATTATAAAGCAAAGTGTCAATAATGCCA
AAAAAATGTACAAGCACGAATTCATACGCAAttctttttgaaggaaaaac
gaaaaaaatcttcaaagatTTCGACAATATCTCGTTTTTgagaagaaaag
tttgaagcttgaaacttcaaaaaacattgtattttcaactttttaaaaat
ttaggcAACCCTGTGTGATACAATTTCTCACAATTTAATGAGTCAGTTAT
TTTCGGAACCTAacccttaaccctattattatcaggctttttcggatttt
gtattctcaggGGGgaggggtgttttccaccagccttgcataacttttga
tctagaaaaggtatggacttgaaatttggcacaaatgttctctaccataa
aaggagttcatagaaaaaattttggttgatgacgtcatcataaaggtgat
ggcgtcatcacaaagtttcacaattatcgctgaccaatgaaaaagtacta
ttcaataaaatagcaattaaatttgaacgaatggagatttttcaattatg
ttttgaatttctaaaagtcaaaaagaatatctttaacatatttgccggtt
ttaaatatactaataaaatcaaggtttaaaatccatgcagaaaatgagta
aattttttcaaaaatcaatgacgtcatttatgatgacgtcagcagttttt
gaaaattcTTAAAATATTTTTTAAAATTTATCATTGATACCTAAAACCTG
TCAAAATTTGAAGTCaattggatgcctagatcaaaagttatgctaaattt
aagattttgggattttacagggttttagctggattttatgatatgcctgc
acaaaaaagtcataaaacctgatctggtcggtgtataattgtaaaattta
gtaTACATACAGCTactaggattatattaaaagtcaaaaactttcagagt
gttaaaaaaaaaattttcactgagctattagcaaaagagtgccagcctgg
tggaaaacaccccctgataaaaatagggttaaaaccCAAAAGAAGTACTT
ATTCGTTCAAAATCAGACAAAATTCCACGTCCCAAATTTGAGGATATAAa
acctgaccacttgatttaaaagggcATGAACCGAATGTTTTTAGAAATAg
tataaaaaaatactttttcaatGGTACTAAAACCATTGTCTAACTCTAGT
CTAATTGTCTAATTCTAGCTTTcagatttaataaaaaaatgttggaaatt
ttcaaattgttcaaaaaatgtTGCGTGCATAACTAGTGACACGTCCCTTT
AAATCCCATTTTCCTGAATAGCTCTCCCCCAGAGGACACCActgttgtaa
tttttttaatatctttttttcagCCGAAGATCTACAGCCaaacaatttac
tttttttcattcCAATTCTATCCAATGAATGGATCGTACAATTACATTTC
AAACTTCTTGCCGAGCATGCTGGTGGAAGCAATTGGTGTAATATAATACA
TGTCACAAAGGGTCAAAACAATATTGCTTACGGAGATCGAACACCAGCCA
TCTTCTTTAATAaggtgaaaaagtttttgaaaaaaatctttatcGACCCT
TCAAcgccaaaataaaatttctgcCTCATTGAAATCTAATTCATTTTCAC
AATTATCCAAAAACATctgtaatttttgtttgaagcaCTAAATTCTAGGC
AGAAAAAGAACCTTCTGCAATAtgccaaaattaattcaaaaatactttta
aaaaaacttaaaattaatatttctttGATTCCTTCCTTCTTCTCACCGAA
TTAGTTCACGCCATTTAACTTATCTGCTTTTTACTTTCAGACGGactgta
ttttttatttaatcatatttaaaaaaatctttaggcAACTTCGCTGCTAA
ATATAGGATCGGCAGTGAATGGCAGCAAAAATTACGCTCGGTATGCNAAC
TTATTTGCTTTTTACTTTCAGACGGactgtattttttatttaatcatatt
tgaaaaatctttaggCAACTTCGCTGCTAAGTATAGGATCGGCAGTGAAT
GGCAGCAAAAATTACGCTCGGTATCTAACTGTCCAATACAACACCGAATA
CAATGTGGAGATTCACCAGCGATACAAAAGTGGAGGTGTTTACAAATATT
CCATCCTTCTCAATGGAGAAGAAATTCACTCAATAGATAATACACAAGCT
CAACAATTTTATGACATGAAAGTTTACATTTCCGATCCTTGGTTCCCGGC
ATGCAATGGTTGGATTAAACATGTCAAAATTACtaactttttgtaatttt
ttatttattaaagaTCTTAAGGAACTTTTTTAGTACCTTAAAGATGGATA
TTTTGAGACAAATTTAATTCTAGCAgatggttgaaaaagttttttcgtag
CAAATTTAATTGGTGGTTATAGGGTAATATTTCTTGCTAAAAATCGTTAT
TCTaagacaaaaaagtaaaatcaaattATGAAAAGAACTTTAAGCTTAAC
CAACTTAGAATTTTATAG Coding sequence (CDS) from alignment at scaffold_109:1483..4850+ >TCONS_00046342 ID=TCONS_00046342|Name=TCONS_00046342|organism=Clytia hemisphaerica|type=CDS|length=2640bp|location=Sequence derived from alignment at scaffold_109:1483..4850+ (Clytia hemisphaerica)
GTACATGGTTCGTTGGATTCTCATCTGACGGATGCAAACTTAATAGATAT
GGTTTTGTTTGGAGGAAGGAAATCTCAATATTTGTTATTGTTATTACTGA
GTATTGTACGCATAAATGCTTCAAAATGCTGGCAAAAGattccaGAGAAC
AATCACGGCATACAGCCAACCACTATAGTGAATGAAGCCGAAGATCTACA
GCCaaacaatttactttttttcattcCAATTCTATCCAATGAATGGATCG
TACAATTACATTTCAAACTTCTTGCCGAGCATGCTGGTGGAAGCAATTGG
TGTAATATAATACATGTCACAAAGGGTCAAAACAATATTGCTTACGGAGA
TCGAACACCAGCCATCTTCTTTAATAaggCAACTTCGCTGCTAAGTATAG
GATCGGCAGTGAATGGCAGCAAAAATTACGCTCGGTATCTAACTGTCCAA
TACAACACCGAATACAATGTGGAGATTCACCAGCGATACAAAAGTGGAGG
TGTTTACAAATATTCCATCCTTCTCAATGGAGAAGAAATTCACTCAATAG
ATAATACACAAGCTCAACAATTTTATGACATGAAAGTTTACATTTCCGAT
CCTTGGTTCCCGGCATGCAATGGTTGGATTAAACATGTCAAAATTACtaa
ctttttgtaaGTACATGGTTCGTTGGATTCTCATCTGACGGATGCAAACT
TAATAGATATGGTTTTGTTTGGAGGAAGGAAATCTCAATATTTGTTATTG
TTATTACTGAGTATTGTACGCATAAATGCTTCAAAATGCTGGCAAAAGat
tccaGAGAACAATCACGGCATACAGCCAACCACTATAGTGAATGAAGCCG
AAGATCTACAGCCaaacaatttactttttttcattcCAATTCTATCCAAT
GAATGGATCGTACAATTACATTTCAAACTTCTTGCCGAGCATGCTGGTGG
AAGCAATTGGTGTAATATAATACATGTCACAAAGGGTCAAAACAATATTG
CTTACGGAGATCGAACACCAGCCATCTTCTTTAATAaggCAACTTCGCTG
CTAAGTATAGGATCGGCAGTGAATGGCAGCAAAAATTACGCTCGGTATCT
AACTGTCCAATACAACACCGAATACAATGTGGAGATTCACCAGCGATACA
AAAGTGGAGGTGTTTACAAATATTCCATCCTTCTCAATGGAGAAGAAATT
CACTCAATAGATAATACACAAGCTCAACAATTTTATGACATGAAAGTTTA
CATTTCCGATCCTTGGTTCCCGGCATGCAATGGTTGGATTAAACATGTCA
AAATTACtaactttttgtaaGTACATGGTTCGTTGGATTCTCATCTGACG
GATGCAAACTTAATAGATATGGTTTTGTTTGGAGGAAGGAAATCTCAATA
TTTGTTATTGTTATTACTGAGTATTGTACGCATAAATGCTTCAAAATGCT
GGCAAAAGattccaGAGAACAATCACGGCATACAGCCAACCACTATAGTG
AATGAAGCCGAAGATCTACAGCCaaacaatttactttttttcattcCAAT
TCTATCCAATGAATGGATCGTACAATTACATTTCAAACTTCTTGCCGAGC
ATGCTGGTGGAAGCAATTGGTGTAATATAATACATGTCACAAAGGGTCAA
AACAATATTGCTTACGGAGATCGAACACCAGCCATCTTCTTTAATAaggC
AACTTCGCTGCTAAGTATAGGATCGGCAGTGAATGGCAGCAAAAATTACG
CTCGGTATCTAACTGTCCAATACAACACCGAATACAATGTGGAGATTCAC
CAGCGATACAAAAGTGGAGGTGTTTACAAATATTCCATCCTTCTCAATGG
AGAAGAAATTCACTCAATAGATAATACACAAGCTCAACAATTTTATGACA
TGAAAGTTTACATTTCCGATCCTTGGTTCCCGGCATGCAATGGTTGGATT
AAACATGTCAAAATTACtaactttttgtaaGTACATGGTTCGTTGGATTC
TCATCTGACGGATGCAAACTTAATAGATATGGTTTTGTTTGGAGGAAGGA
AATCTCAATATTTGTTATTGTTATTACTGAGTATTGTACGCATAAATGCT
TCAAAATGCTGGCAAAAGattccaGAGAACAATCACGGCATACAGCCAAC
CACTATAGTGAATGAAGCCGAAGATCTACAGCCaaacaatttactttttt
tcattcCAATTCTATCCAATGAATGGATCGTACAATTACATTTCAAACTT
CTTGCCGAGCATGCTGGTGGAAGCAATTGGTGTAATATAATACATGTCAC
AAAGGGTCAAAACAATATTGCTTACGGAGATCGAACACCAGCCATCTTCT
TTAATAaggCAACTTCGCTGCTAAGTATAGGATCGGCAGTGAATGGCAGC
AAAAATTACGCTCGGTATCTAACTGTCCAATACAACACCGAATACAATGT
GGAGATTCACCAGCGATACAAAAGTGGAGGTGTTTACAAATATTCCATCC
TTCTCAATGGAGAAGAAATTCACTCAATAGATAATACACAAGCTCAACAA
TTTTATGACATGAAAGTTTACATTTCCGATCCTTGGTTCCCGGCATGCAA
TGGTTGGATTAAACATGTCAAAATTACtaactttttgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046342-exon-scaffold_109-1491911889:1483..1622 | TCONS_00046342-exon-scaffold_109-1491911889:1483..1622 | Clytia hemisphaerica | exon |
| TCONS_00046342-exon-scaffold_109-1510915933:1483..1622 | TCONS_00046342-exon-scaffold_109-1510915933:1483..1622 | Clytia hemisphaerica | exon |
| TCONS_00046342-exon-scaffold_109-1575043694:1483..1622 | TCONS_00046342-exon-scaffold_109-1575043694:1483..1622 | Clytia hemisphaerica | exon |
| TCONS_00046342-exon-scaffold_109-1491911889:2134..2182 | TCONS_00046342-exon-scaffold_109-1491911889:2134..2182 | Clytia hemisphaerica | exon |
| TCONS_00046342-exon-scaffold_109-1510915933:2134..2182 | TCONS_00046342-exon-scaffold_109-1510915933:2134..2182 | Clytia hemisphaerica | exon |
| TCONS_00046342-exon-scaffold_109-1575043694:2134..2182 | TCONS_00046342-exon-scaffold_109-1575043694:2134..2182 | Clytia hemisphaerica | exon |
| TCONS_00046342-exon-scaffold_109-1491911889:3706..3896 | TCONS_00046342-exon-scaffold_109-1491911889:3706..3896 | Clytia hemisphaerica | exon |
| TCONS_00046342-exon-scaffold_109-1510915933:3706..3896 | TCONS_00046342-exon-scaffold_109-1510915933:3706..3896 | Clytia hemisphaerica | exon |
| TCONS_00046342-exon-scaffold_109-1575043694:3706..3896 | TCONS_00046342-exon-scaffold_109-1575043694:3706..3896 | Clytia hemisphaerica | exon |
| TCONS_00046342-exon-scaffold_109-1491911889:4347..4850 | TCONS_00046342-exon-scaffold_109-1491911889:4347..4850 | Clytia hemisphaerica | exon |
| TCONS_00046342-exon-scaffold_109-1510915933:4347..4850 | TCONS_00046342-exon-scaffold_109-1510915933:4347..4850 | Clytia hemisphaerica | exon |
| TCONS_00046342-exon-scaffold_109-1575043694:4347..4850 | TCONS_00046342-exon-scaffold_109-1575043694:4347..4850 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:1483..4850 + |
Blast
The following BLAST results are available for this feature:
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