TCONS_00046403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046403
Unique NameTCONS_00046403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046403 ID=TCONS_00046403|Name=TCONS_00046403|organism=Clytia hemisphaerica|type=transcript|length=1378bp
CTAATACGATGAGCTAATGATGACAGATACAATTTATCTTCATCTTTGTG
TCAATTTTCCTGTCATCCGAATTTTAGaccaatataaaaataaaaatggg
gaCAACGACGGGTGTTGTCttggttttaaatttcatttgtaTAAGTGTCG
GGATAGCAGGTATTGTTGCTGGTGCTATTGGTCATTCGTGGTGGAGGTCT
GAGAATTCGGTGGAGAAAACGGAAATTGGTTTATGGCGATCTTGCGTAAC
TCTCCTGAGTAGTGATGATACGTCGTGTGGAACAAGTCGAGAAGACGTGC
TGAAGTTCGATCCCGAGTTCAAGGATAACAAGAACAGTGACATCTTATTG
GTGCTATTGATTGGGGCAGGATTTTTTGGAGTGTGCGCACTAATCACCTC
AGCTGCCATGTTTTGTTGTCAAAATAAGCGAACGGGTTGGTTGTGTGGAA
GTATTTTGGTCATCTGCAACACTCTACTGGCAGCGGGAGCTACACTTGCA
TGTTTGATATACGCCGAATTGGAAATTAAATGGGATTCATCGACGCGAGG
CTGGTCGGTCATTGCTACATGGATAGGTCTTGGGATGTTCGTCATGTCGT
TCACCCTCTCCATCATTGGAGCATGTCTCATCCCAAGCTCAACAAATGGA
GGCTCCATGAAATATACTTATTAGTTTTGTTCCCGTAAAATGTAAATAGT
TTTCGCTAAGTTCCCGTTTGTATACTTTGTGTAAATAGGgtgtaaatttt
cttcaaactcAAAAATAGTAAGCAACTCTCTTCAATCCACTGgcctttat
aaaccctggactAAGATTCATGACGGGGgactttgatcggagttttctGG
TGGTGCCCATAAAGAAGAAATATTGTGattttaaaaatgaacttcaaatg
GCGCTATAACACCACAAGTATCCAAGTAacagtagatctagcgctctcga
caCATTTTACACCGCTCTTTATTGAGTAATGCTTTTTTTAGGGTACCACT
CTAAAAAAAACTCCTATAAGGGATTTTGGTTATGGCGGGGATCAAGAAAC
TGCCTACAGGGTTTAAAAAAAGCTCAGTGCTTCACTCTAGTCTATATGGA
TTGAAAGCCTGGAATGTTAGACTTAACGAATTATTAGACTTTTTCCATAA
TTTCAATATGTATTTTCAAACCGAAATGAAGTATTTGCAGCCTTCACTCG
TGATACGATAAAATAACAGACTAAAAATTAATGCCCCTTTTGGTGGATAA
TTTACCCTAACTAAACGTCTCATCCAGTTTTGACAAAacatttatttatt
aaattattttctttgtcaTCCATTTacaatattattttcattttcagaaa
aaaaaaccaaaagttttgtGTCCATAAC
Run BLAST on NCBI

protein sequence of TCONS_00046403-protein

>TCONS_00046403-protein ID=TCONS_00046403-protein|Name=TCONS_00046403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MGTTTGVVLVLNFICISVGIAGIVAGAIGHSWWRSENSVEKTEIGLWRSC
VTLLSSDDTSCGTSREDVLKFDPEFKDNKNSDILLVLLIGAGFFGVCALI
TSAAMFCCQNKRTGWLCGSILVICNTLLAAGATLACLIYAELEIKWDSST
RGWSVIATWIGLGMFVMSFTLSIIGACLIPSSTNGGSMKYTY
Run BLAST on NCBI

transcript from alignment at scaffold_109:298642..300982-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046403 ID=TCONS_00046403|Name=TCONS_00046403|organism=Clytia hemisphaerica|type=transcript|length=2341bp|location=Sequence derived from alignment at scaffold_109:298642..300982- (Clytia hemisphaerica)
CTAATACGATGAGCTAATGATGACAGATACAATTTATCTTCATCTTTGTG
TCAATTTTCCTGTCATCCGAATTTTAGACCAATATAAAAATAAAAATGGG
GACAACGACGGGTGTTGTCTTGGTTTTAAATTTCATTTGTATAAGTGTCG
GGATAGCAGGTATTGTTGCTGGTGCTATTGGTCATTCGTGGTGGAGGTCT
GAGAATTCGGTGGAGAAAACGGAAATTGGTTTATGGCGATCTTGCGTAAC
TCTCCTGAGTAGTGATGATACGTCGTGTGGAACAAGTCGAGAAGACGTGC
TGAAGTTCGATCCCGAGTTCAAGGATAACAGTAAGAAGATAACTTTTGGC
TGAAATTTCTTTCGGATGAAAATTAATTGAGTCTGTTTATCCCTCGTACT
TCGCAAAGATTTTTTATACGCGTTTTTTTATTTTAATTAAAACATCCAAA
ATTATATAAGCCTTCAGATGTTCTTAACTTTTTGGGTTTCAAGCGTAAAA
ATGTTCTTAACATGTTCTTATTTTCAGCATTCATTGAATATTTTTGTCCC
TTTAAGATGTTTTGTCTAAGAAAAAAAGGTGTTTCAGAGCCCACAAAGCA
AAATGTTCTTAACTTCTTCTTAGGATTTTGGCCATCGAAGCCTTATGTTT
CTATATAGTTTGTTCTTAAGCTTGTTTTAGAGAAAAACAGCACACTCAAA
AAATAATTTTCATCTTCTTTTCAGAGAACAGTGACATCTTATTGGTGCTA
TTGATTGGGGCAGGATTTTTTGGAGTGTGCGCACTAATCACCTCAGCTGC
CATGTTTTGTTGTCAAAATAAGCGAACGGGTTGGTTGTGTGGAAGTATTT
TGGTCATCTGCAACACTCTACTGGCAGGTAAGATTTAGCTTTCTCATTCA
TACCAATGAAACTCAAAAGATATCGGCTCCTTCTCACAGACTCGGTGGAA
ACCCCTTTTACTGGAAAAAAATTAACTAAAATATTGTCCCAAGTTACAAA
TAATACTCCATTTTTTGTCTCCGGTAAAGAATTATTGGTAAAATATACTG
TTAAATATTGTGCTATTCTTCCATCTCAACGAATTTTCTTATTTGAAAAT
TGGGATTCAATCCTTGATCATAAAGAATTATAGGACGAATTCCAGTCCAC
ATTTAGTTTCAGCCCGTTATTTTAACCCCCGCTGGCTGAAAAAAATCCTA
TCAGTTCCGTGGTCAGGTTCTTTGAAAGTATTGATAATTTTCTTTAAAAC
GCTGCATAATCTATTTTCCAACTAGTATACATTATTTTCCTTCAAAAATA
CATAGAATAATTGCCTTCAAAAATGTTAAAACTGTTTTCCTTAAAAATAA
CACGTCCTATTTTCCTTTAAAAATTGAACAATATTCACTCAAAAATAGAT
ATATCTTTTTCTTTCAAAAAATGATGATTTTTTTTCTCGCTTATAGCGGG
AGCTACACTTGCATGTTTGATATACGCCGAATTGGAAATTAAATGGGATT
CATCGACGCGAGGCTGGTCGGTCATTGCTACATGGATAGGTCTTGGGATG
TTCGTCATGTCGTTCACCCTCTCCATCATTGGAGCATGTCTCATCCCAAG
CTCAACAAATGGAGGCTCCATGAAATATACTTATTAGTTTTGTTCCCGTA
AAATGTAAATAGTTTTCGCTAAGTTCCCGTTTGTATACTTTGTGTAAATA
GGGTGTAAATTTTCTTCAAACTCAAAAATAGTAAGCAACTCTCTTCAATC
CACTGGCCTTTATAAACCCTGGACTAAGATTCATGACGGGGGACTTTGAT
CGGAGTTTTCTGGTGGTGCCCATAAAGAAGAAATATTGTGATTTTAAAAA
TGAACTTCAAATGGCGCTATAACACCACAAGTATCCAAGTAACAGTAGAT
CTAGCGCTCTCGACACATTTTACACCGCTCTTTATTGAGTAATGCTTTTT
TTAGGGTACCACTCTAAAAAAAACTCCTATAAGGGATTTTGGTTATGGCG
GGGATCAAGAAACTGCCTACAGGGTTTAAAAAAAGCTCAGTGCTTCACTC
TAGTCTATATGGATTGAAAGCCTGGAATGTTAGACTTAACGAATTATTAG
ACTTTTTCCATAATTTCAATATGTATTTTCAAACCGAAATGAAGTATTTG
CAGCCTTCACTCGTGATACGATAAAATAACAGACTAAAAATTAATGCCCC
TTTTGGTGGATAATTTACCCTAACTAAACGTCTCATCCAGTTTTGACAAA
ACATTTATTTATTAAATTATTTTCTTTGTCATCCATTTACAATATTATTT
TCATTTTCAGAAAAAAAAACCAAAAGTTTTGTGTCCATAAC

Coding sequence (CDS) from alignment at scaffold_109:298642..300982-

>TCONS_00046403 ID=TCONS_00046403|Name=TCONS_00046403|organism=Clytia hemisphaerica|type=CDS|length=1737bp|location=Sequence derived from alignment at scaffold_109:298642..300982- (Clytia hemisphaerica)
CGGGAGCTACACTTGCATGTTTGATATACGCCGAATTGGAAATTAAATGG
GATTCATCGACGCGAGGCTGGTCGGTCATTGCTACATGGATAGGTCTTGG
GATGTTCGTCATGTCGTTCACCCTCTCCATCATTGGAGCATGTCTCATCC
CAAGCTCAACAAATGGAGGCTCCATGAAATATACTTATTAGAGAACAGTG
ACATCTTATTGGTGCTATTGATTGGGGCAGGATTTTTTGGAGTGTGCGCA
CTAATCACCTCAGCTGCCATGTTTTGTTGTCAAAATAAGCGAACGGGTTG
GTTGTGTGGAAGTATTTTGGTCATCTGCAACACTCTACTGGCAGATGGGG
ACAACGACGGGTGTTGTCTTGGTTTTAAATTTCATTTGTATAAGTGTCGG
GATAGCAGGTATTGTTGCTGGTGCTATTGGTCATTCGTGGTGGAGGTCTG
AGAATTCGGTGGAGAAAACGGAAATTGGTTTATGGCGATCTTGCGTAACT
CTCCTGAGTAGTGATGATACGTCGTGTGGAACAAGTCGAGAAGACGTGCT
GAAGTTCGATCCCGAGTTCAAGGATAACACGGGAGCTACACTTGCATGTT
TGATATACGCCGAATTGGAAATTAAATGGGATTCATCGACGCGAGGCTGG
TCGGTCATTGCTACATGGATAGGTCTTGGGATGTTCGTCATGTCGTTCAC
CCTCTCCATCATTGGAGCATGTCTCATCCCAAGCTCAACAAATGGAGGCT
CCATGAAATATACTTATTAGAGAACAGTGACATCTTATTGGTGCTATTGA
TTGGGGCAGGATTTTTTGGAGTGTGCGCACTAATCACCTCAGCTGCCATG
TTTTGTTGTCAAAATAAGCGAACGGGTTGGTTGTGTGGAAGTATTTTGGT
CATCTGCAACACTCTACTGGCAGATGGGGACAACGACGGGTGTTGTCTTG
GTTTTAAATTTCATTTGTATAAGTGTCGGGATAGCAGGTATTGTTGCTGG
TGCTATTGGTCATTCGTGGTGGAGGTCTGAGAATTCGGTGGAGAAAACGG
AAATTGGTTTATGGCGATCTTGCGTAACTCTCCTGAGTAGTGATGATACG
TCGTGTGGAACAAGTCGAGAAGACGTGCTGAAGTTCGATCCCGAGTTCAA
GGATAACACGGGAGCTACACTTGCATGTTTGATATACGCCGAATTGGAAA
TTAAATGGGATTCATCGACGCGAGGCTGGTCGGTCATTGCTACATGGATA
GGTCTTGGGATGTTCGTCATGTCGTTCACCCTCTCCATCATTGGAGCATG
TCTCATCCCAAGCTCAACAAATGGAGGCTCCATGAAATATACTTATTAGA
GAACAGTGACATCTTATTGGTGCTATTGATTGGGGCAGGATTTTTTGGAG
TGTGCGCACTAATCACCTCAGCTGCCATGTTTTGTTGTCAAAATAAGCGA
ACGGGTTGGTTGTGTGGAAGTATTTTGGTCATCTGCAACACTCTACTGGC
AGATGGGGACAACGACGGGTGTTGTCTTGGTTTTAAATTTCATTTGTATA
AGTGTCGGGATAGCAGGTATTGTTGCTGGTGCTATTGGTCATTCGTGGTG
GAGGTCTGAGAATTCGGTGGAGAAAACGGAAATTGGTTTATGGCGATCTT
GCGTAACTCTCCTGAGTAGTGATGATACGTCGTGTGGAACAAGTCGAGAA
GACGTGCTGAAGTTCGATCCCGAGTTCAAGGATAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029609XLOC_029609Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046403-proteinTCONS_00046403-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046403-exon-scaffold_109-1575043694:300653..300982TCONS_00046403-exon-scaffold_109-1575043694:300653..300982Clytia hemisphaericaexon
TCONS_00046403-exon-scaffold_109-1575043694:300106..300258TCONS_00046403-exon-scaffold_109-1575043694:300106..300258Clytia hemisphaericaexon
TCONS_00046403-exon-scaffold_109-1575043694:298642..299536TCONS_00046403-exon-scaffold_109-1575043694:298642..299536Clytia hemisphaericaexon
TCONS_00046403-exon-scaffold_109-1510915933:300653..300982TCONS_00046403-exon-scaffold_109-1510915933:300653..300982Clytia hemisphaericaexon
TCONS_00046403-exon-scaffold_109-1510915933:300106..300258TCONS_00046403-exon-scaffold_109-1510915933:300106..300258Clytia hemisphaericaexon
TCONS_00046403-exon-scaffold_109-1510915933:298642..299536TCONS_00046403-exon-scaffold_109-1510915933:298642..299536Clytia hemisphaericaexon
TCONS_00046403-exon-scaffold_109-1491911889:300653..300982TCONS_00046403-exon-scaffold_109-1491911889:300653..300982Clytia hemisphaericaexon
TCONS_00046403-exon-scaffold_109-1491911889:300106..300258TCONS_00046403-exon-scaffold_109-1491911889:300106..300258Clytia hemisphaericaexon
TCONS_00046403-exon-scaffold_109-1491911889:298642..299536TCONS_00046403-exon-scaffold_109-1491911889:298642..299536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:298642..300982 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.7814	18.7039	15.2569	12.2034	3.96992	3.39582	3.8628	4.09117	6.52146	11.0239	11.4688	13.1379	39.8029	44.2703	0.79272	0.702761	17.9756	21.32	145.789	88.6181	48.6506	45.0842	20.4956	23.1574	16.7483	16.227	30.6697	33.1756	0.741066	0.857987
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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