TCONS_00046413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046413
Unique NameTCONS_00046413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046413 ID=TCONS_00046413|Name=TCONS_00046413|organism=Clytia hemisphaerica|type=transcript|length=671bp
CCTTCTTTTGGAAGGATGTAATGGCAACAATAATAAGGTAATGTATCATA
CACACTTTGAGCATTGTTGCTCAACACTTCCTTGTTTTGATGGTCAAAAA
TTCAGATTAAAAAATTTACTAGCGGTAAAAAATATTTGGTGATTTTCGAA
ATATATCTTTCATACctcaaaatatatttaattGTTAAAAATAGTTCCCa
taaatagaataaaaatataATGATAATTTGAATTAGGCACATTTACAAAA
CTTTTGTAGTTTTATTTTTCGCTGCTCCCTTTATTTTCTTGATGTGACGT
TTGGCTCCTCCCACTTCTTCAATCAACTTGTTGAATGACAATCCTTCTAT
CAGCTCCTTtacattttctttctcatttccCATCATGTTACCAGCTGGCG
AGTATCGACAACAAACATAATACCCTTCCATGCCGTTGCGTGAGGCCTTA
GCGGCGCCACAACCGAGCTTGGTGGACTCCTTCCACACGACTTGAGTGAA
ATGACCAGTTCCAGCAATAGATGGTTTATCGAAGCTGTATCCAGGATTAA
GTGCTTCACTATACCTGCAATAAAATAAGGAAACAATGGTCATTAGTTGA
ATCTCTTCAAAACAGGCAGCTTACTAcatgtgttttttataagaacatcc
aaaatgttttcaagccttttg
Run BLAST on NCBI

protein sequence of TCONS_00046413-protein

>TCONS_00046413-protein ID=TCONS_00046413-protein|Name=TCONS_00046413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MTIVSLFYCRYSEALNPGYSFDKPSIAGTGHFTQVVWKESTKLGCGAAKA
SRNGMEGYYVCCRYSPAGNMMGNEKENVKELIEGLSFNKLIEEVGGAKRH
IKKIKGAAKNKTTKVL
Run BLAST on NCBI

transcript from alignment at scaffold_109:120749..121419

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046413 ID=TCONS_00046413|Name=TCONS_00046413|organism=Clytia hemisphaerica|type=transcript|length=671bp|location=Sequence derived from alignment at scaffold_109:120749..121419 (Clytia hemisphaerica)
caaaaggcttgaaaacattttggatgttcttataaaaaacacatgTAGTA
AGCTGCCTGTTTTGAAGAGATTCAACTAATGACCATTGTTTCCTTATTTT
ATTGCAGGTATAGTGAAGCACTTAATCCTGGATACAGCTTCGATAAACCA
TCTATTGCTGGAACTGGTCATTTCACTCAAGTCGTGTGGAAGGAGTCCAC
CAAGCTCGGTTGTGGCGCCGCTAAGGCCTCACGCAACGGCATGGAAGGGT
ATTATGTTTGTTGTCGATACTCGCCAGCTGGTAACATGATGggaaatgag
aaagaaaatgtaAAGGAGCTGATAGAAGGATTGTCATTCAACAAGTTGAT
TGAAGAAGTGGGAGGAGCCAAACGTCACATCAAGAAAATAAAGGGAGCAG
CGAAAAATAAAACTACAAAAGTTTTGTAAATGTGCCTAATTCAAATTATC
ATtatatttttattctatttatGGGAACTATTTTTAACaattaaatatat
tttgagGTATGAAAGATATATTTCGAAAATCACCAAATATTTTTTACCGC
TAGTAAATTTTTTAATCTGAATTTTTGACCATCAAAACAAGGAAGTGTTG
AGCAACAATGCTCAAAGTGTGTATGATACATTACCTTATTATTGTTGCCA
TTACATCCTTCCAAAAGAAGG

Coding sequence (CDS) from alignment at scaffold_109:120749..121419

>TCONS_00046413 ID=TCONS_00046413|Name=TCONS_00046413|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_109:120749..121419 (Clytia hemisphaerica)
ATGACCATTGTTTCCTTATTTTATTGCAGGTATAGTGAAGCACTTAATCC
TGGATACAGCTTCGATAAACCATCTATTGCTGGAACTGGTCATTTCACTC
AAGTCGTGTGGAAGGAGTCCACCAAGCTCGGTTGTGGCGCCGCTAAGGCC
TCACGCAACGGCATGGAAGGGTATTATGTTTGTTGTCGATACTCGCCAGC
TGGTAACATGATGggaaatgagaaagaaaatgtaAAGGAGCTGATAGAAG
GATTGTCATTCAACAAGTTGATTGAAGAAGTGGGAGGAGCCAAACGTCAC
ATCAAGAAAATAAAGGGAGCAGCGAAAAATAAAACTACAAAAGTTTTGTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029619XLOC_029619Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046413-proteinTCONS_00046413-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046413-exon-scaffold_109-1491911889:120749..121419TCONS_00046413-exon-scaffold_109-1491911889:120749..121419Clytia hemisphaericaexon
TCONS_00046413-exon-scaffold_109-1510915933:120749..121419TCONS_00046413-exon-scaffold_109-1510915933:120749..121419Clytia hemisphaericaexon
TCONS_00046413-exon-scaffold_109-1575043694:120749..121419TCONS_00046413-exon-scaffold_109-1575043694:120749..121419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:120749..121419 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.230375	0.074884	0.173895	0	0.103558	0.654662	347.028	366.014	401.207	227.96	309.801	89.2954	0.0510717	0.530385	0.0436048	0	65.0837	54.3005	1.22447	0.0854212	0.593972	0.760512	0	0	0.0824478	0	0	0	0.170465	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001283Allrgn_V5/Tpx1
IPR014044CAP_domain
IPR018244Allrgn_V5/Tpx1_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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