TCONS_00046417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046417
Unique NameTCONS_00046417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046417 ID=TCONS_00046417|Name=TCONS_00046417|organism=Clytia hemisphaerica|type=transcript|length=591bp
CACCAGTGTAGATGTTTATGAGAAGATTTTGATCGTTGTACTCTGGATCG
AAAGGGTGAGCACATAACTGTAAGGCATCCCTCAATTTGATACGATCTTT
TAAGTCATTTTCAATTCTTGTGTTAGACTCTTCTTTATGAGAACTTTTAA
CTTTAGAGTTTTTTCCTCTCACTTCGTCGAGATCCTTCAAGACCTCCGTG
CAAGCTGGTAAACTCTCCGTCGTTCTTGGTTGTGTTGTTACACCGATTAT
ACCTCCAGGTCCTTTACCATACCTCATATACGTCGTTTCGATCATCATAT
CACTCCAAATTCCGTTCCATATTCCATCTTGATGTCGCATGACATGCTCT
CCTCTCATGAAAGCTTCTAGAATACATTTTGGAAGTTTATGCAGAGTTCT
GAGGTAATAGATTCCATAACGAGCATAATTCATATGACCCGATGCAAAGA
AATAAGGCATAAGGAAAAAAAGACTAAACTACTGGAAAATCTTTACTCAC
TTTGAGTACGTTTCTAGCTCTCACTACAAATAAAAGAGATTTCATTTCAG
ATTCCTGTTTCATATGATACACGTCTCGTGTATATGGTTAG
Run BLAST on NCBI

protein sequence of TCONS_00046417-protein

>TCONS_00046417-protein ID=TCONS_00046417-protein|Name=TCONS_00046417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MPYFFASGHMNYARYGIYYLRTLHKLPKCILEAFMRGEHVMRHQDGIWNG
IWSDMMIETTYMRYGKGPGGIIGVTTQPRTTESLPACTEVLKDLDEVRGK
NSKVKSSHKEESNTRIENDLKDRIKLRDALQLCAHPFDPEYNDQNLLINI
YTG
Run BLAST on NCBI

transcript from alignment at scaffold_109:384557..385147

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046417 ID=TCONS_00046417|Name=TCONS_00046417|organism=Clytia hemisphaerica|type=transcript|length=591bp|location=Sequence derived from alignment at scaffold_109:384557..385147 (Clytia hemisphaerica)
CTAACCATATACACGAGACGTGTATCATATGAAACAGGAATCTGAAATGA
AATCTCTTTTATTTGTAGTGAGAGCTAGAAACGTACTCAAAGTGAGTAAA
GATTTTCCAGTAGTTTAGTCTTTTTTTCCTTATGCCTTATTTCTTTGCAT
CGGGTCATATGAATTATGCTCGTTATGGAATCTATTACCTCAGAACTCTG
CATAAACTTCCAAAATGTATTCTAGAAGCTTTCATGAGAGGAGAGCATGT
CATGCGACATCAAGATGGAATATGGAACGGAATTTGGAGTGATATGATGA
TCGAAACGACGTATATGAGGTATGGTAAAGGACCTGGAGGTATAATCGGT
GTAACAACACAACCAAGAACGACGGAGAGTTTACCAGCTTGCACGGAGGT
CTTGAAGGATCTCGACGAAGTGAGAGGAAAAAACTCTAAAGTTAAAAGTT
CTCATAAAGAAGAGTCTAACACAAGAATTGAAAATGACTTAAAAGATCGT
ATCAAATTGAGGGATGCCTTACAGTTATGTGCTCACCCTTTCGATCCAGA
GTACAACGATCAAAATCTTCTCATAAACATCTACACTGGTG

Coding sequence (CDS) from alignment at scaffold_109:384557..385147

>TCONS_00046417 ID=TCONS_00046417|Name=TCONS_00046417|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_109:384557..385147 (Clytia hemisphaerica)
ATGCCTTATTTCTTTGCATCGGGTCATATGAATTATGCTCGTTATGGAAT
CTATTACCTCAGAACTCTGCATAAACTTCCAAAATGTATTCTAGAAGCTT
TCATGAGAGGAGAGCATGTCATGCGACATCAAGATGGAATATGGAACGGA
ATTTGGAGTGATATGATGATCGAAACGACGTATATGAGGTATGGTAAAGG
ACCTGGAGGTATAATCGGTGTAACAACACAACCAAGAACGACGGAGAGTT
TACCAGCTTGCACGGAGGTCTTGAAGGATCTCGACGAAGTGAGAGGAAAA
AACTCTAAAGTTAAAAGTTCTCATAAAGAAGAGTCTAACACAAGAATTGA
AAATGACTTAAAAGATCGTATCAAATTGAGGGATGCCTTACAGTTATGTG
CTCACCCTTTCGATCCAGAGTACAACGATCAAAATCTTCTCATAAACATC
TACACTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029623XLOC_029623Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046417-proteinTCONS_00046417-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046417-exon-scaffold_109-1491911889:384557..385147TCONS_00046417-exon-scaffold_109-1491911889:384557..385147Clytia hemisphaericaexon
TCONS_00046417-exon-scaffold_109-1510915933:384557..385147TCONS_00046417-exon-scaffold_109-1510915933:384557..385147Clytia hemisphaericaexon
TCONS_00046417-exon-scaffold_109-1575043694:384557..385147TCONS_00046417-exon-scaffold_109-1575043694:384557..385147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:384557..385147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.185747	0	0	0.308637	0.125245	0.197941	0.358211	0	0.0782629	0.581647	0.752748	0.123707	0.205464	0.449022	0.210947	0.169784	0.27888	0.214382	1.54294	1.44635	0.269387	0.131397	0	0	0.598286	0.0889927	0.254696	0.271819	0.309248	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top