TCONS_00046420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046420
Unique NameTCONS_00046420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046420 ID=TCONS_00046420|Name=TCONS_00046420|organism=Clytia hemisphaerica|type=transcript|length=703bp
GTATTCTTGCATACTAAAAATCAAGTATGCCTTTTTAGTATGCAAATTTA
AATGCATACTAAACCAAGTATGCATTTAAAATTGCATTTAACACCAAGTA
TGCACAAAGTTTTTATTTGGTATTGAAAATTATGTTTCTTGTCTGTACta
tcaaatatgtttttttAGAGTATGGGATGCATCTCACCACTAGCAGGCAA
CTTAAAGGCAAAATCATACTTCCTGACACCCAAGCTAAAAGCTTCTACAT
CCACACCCAAGACAACACCCTCCTCCATCAACAAATCCAACAAAACAGCA
TCATCAATATCATCCCCAGTAAACAAGCCCATCCAAACATCATCGTCAGT
CATCAGCAAGTCCATCCAAACGTCATCCTCAGCCAGCAAGCCAATCAAAA
AGTCACCCTCAGTCAGCAATCCAATCAAAAAGTCACCATCCACTGTAAAC
AAGCCCATCCAAATAGCCACATCAAATCATAATTCAATACCAATAGAAAG
TCAGACAGCAACCGACCAATCAAGTCTAACTTCAAATAATTCATCTAATG
AAACATCAGCCGGGGTGAGAAACTTTCACTACTTTGAAACGCTTATCTCA
AATGTCACCCTCATTTCAAATCTTTTAGATCTCAACCGTCTAACCctaaa
ttttaagaaatacATTTATTATGATTTTGTCCGACAACCAATATTTCTTT
GAG
Run BLAST on NCBI

protein sequence of TCONS_00046420-protein

>TCONS_00046420-protein ID=TCONS_00046420-protein|Name=TCONS_00046420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MGCISPLAGNLKAKSYFLTPKLKASTSTPKTTPSSINKSNKTASSISSPV
NKPIQTSSSVISKSIQTSSSASKPIKKSPSVSNPIKKSPSTVNKPIQIAT
SNHNSIPIESQTATDQSSLTSNNSSNETSAGVRNFHYFETLISNVTLISN
LLDLNRLTLNFKKYIYYDFVRQPIFL
Run BLAST on NCBI

transcript from alignment at scaffold_11:47827..48625-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046420 ID=TCONS_00046420|Name=TCONS_00046420|organism=Clytia hemisphaerica|type=transcript|length=799bp|location=Sequence derived from alignment at scaffold_11:47827..48625- (Clytia hemisphaerica)
GTATTCTTGCATACTAAAAATCAAGTATGCCTTTTTAGTATGCAAATTTA
AATGCATACTAAACCAAGTATGCATTTAAAATTGCATTTAACACCAAGTA
TGCACAAAGTTTTTATTTGGTATTGAAAATTATGTTTCTTGTCTGTACTA
TCAAATATGTTTTTTTAGAGTATGGGATGCATCTCACCACTAGCAGGCAA
CTTAAAGGCAAAATCATACTTCCTGACACCCAAGCTAAAAGCTTCTACAT
CCACACCCAAGACAACACCCTCCTCCATCAACAAATCCAACAAAACAGCA
TCATCAATATCATCCCCAGTAAACAAGCCCATCCAAACATCATCGTCAGT
CATCAGCAAGTCCATCCAAACGTCATCCTCAGCCAGCAAGCCAATCAAAA
AGTCACCATCCACTGTAAACAAGCCCATCCAAACATCATCGTCAGTCATC
AGCAAGTCCATCCAAACGTCATCCTCAGCCAGCAAGCCAATCCAAAAGTC
AACCTCAGTCAGCAATCCAATCAAAAAGTCACCATCCACTGTAAACAAGC
CCATCCAAATAGCCACATCAAATCATAATTCAATACCAATAGAAAGTCAG
ACAGCAACCGACCAATCAAGTCTAACTTCAAATAATTCATCTAATGAAAC
ATCAGCCGGGGTGAGAAACTTTCACTACTTTGAAACGCTTATCTCAAATG
TCACCCTCATTTCAAATCTTTTAGATCTCAACCGTCTAACCCTAAATTTT
AAGAAATACATTTATTATGATTTTGTCCGACAACCAATATTTCTTTGAG

Coding sequence (CDS) from alignment at scaffold_11:47827..48625-

>TCONS_00046420 ID=TCONS_00046420|Name=TCONS_00046420|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_11:47827..48625- (Clytia hemisphaerica)
CTCAGTCAGCAATCCAATCAAAAAGTCACCATCCACTGTAAACAAGCCCA
TCCAAATAGCCACATCAAATCATAATTCAATACCAATAGAAAGTCAGACA
GCAACCGACCAATCAAGTCTAACTTCAAATAATTCATCTAATGAAACATC
AGCCGGGGTGAGAAACTTTCACTACTTTGAAACGCTTATCTCAAATGTCA
CCCTCATTTCAAATCTTTTAGATCTCAACCGTCTAACCCTAAATTTTAAG
AAATACATTTATTATGATTTTGTCCGACAACCAATATTTCTTTGAATGGG
ATGCATCTCACCACTAGCAGGCAACTTAAAGGCAAAATCATACTTCCTGA
CACCCAAGCTAAAAGCTTCTACATCCACACCCAAGACAACACCCTCCTCC
ATCAACAAATCCAACAAAACAGCATCATCAATATCATCCCCAGTAAACAA
GCCCATCCAAACATCATCGTCAGTCATCAGCAAGTCCATCCAAACGTCAT
CCTCAGCCAGCAAGCCAATCAAAAAGTCACCCTCAGTCAGCAATCCAATC
AAAAAGTCACCATCCACTGTAAACAAGCCCATCCAAATAGCCACATCAAA
TCATAATTCAATACCAATAGAAAGTCAGACAGCAACCGACCAATCAAGTC
TAACTTCAAATAATTCATCTAATGAAACATCAGCCGGGGTGAGAAACTTT
CACTACTTTGAAACGCTTATCTCAAATGTCACCCTCATTTCAAATCTTTT
AGATCTCAACCGTCTAACCCTAAATTTTAAGAAATACATTTATTATGATT
TTGTCCGACAACCAATATTTCTTTGAATGGGATGCATCTCACCACTAGCA
GGCAACTTAAAGGCAAAATCATACTTCCTGACACCCAAGCTAAAAGCTTC
TACATCCACACCCAAGACAACACCCTCCTCCATCAACAAATCCAACAAAA
CAGCATCATCAATATCATCCCCAGTAAACAAGCCCATCCAAACATCATCG
TCAGTCATCAGCAAGTCCATCCAAACGTCATCCTCAGCCAGCAAGCCAAT
CAAAAAGTCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029626XLOC_029626Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046420-proteinTCONS_00046420-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046420-exon-scaffold_11-1575043694:48219..48625TCONS_00046420-exon-scaffold_11-1575043694:48219..48625Clytia hemisphaericaexon
TCONS_00046420-exon-scaffold_11-1575043694:47827..48122TCONS_00046420-exon-scaffold_11-1575043694:47827..48122Clytia hemisphaericaexon
TCONS_00046420-exon-scaffold_11-1510915933:48219..48625TCONS_00046420-exon-scaffold_11-1510915933:48219..48625Clytia hemisphaericaexon
TCONS_00046420-exon-scaffold_11-1510915933:47827..48122TCONS_00046420-exon-scaffold_11-1510915933:47827..48122Clytia hemisphaericaexon
TCONS_00046420-exon-scaffold_11-1491911889:48219..48625TCONS_00046420-exon-scaffold_11-1491911889:48219..48625Clytia hemisphaericaexon
TCONS_00046420-exon-scaffold_11-1491911889:47827..48122TCONS_00046420-exon-scaffold_11-1491911889:47827..48122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:47827..48625 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0718173	0.216705	0.166394	0.162124	0.198114	0.0765319	0.192745	0.345762	0.121038	0	0.436563	0.0956598	0.191054	0	0.122341	0.656452	0.337476	0.663109	0.472171	0.319551	0.912687	0.203214	0	0.309211	0	0.139895	0.295427	0.27864	0.159423	0.0812135
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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