|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046439 ID=TCONS_00046439|Name=TCONS_00046439|organism=Clytia hemisphaerica|type=transcript|length=1289bp
CAGGACTGGACAATTTCAGCATATATGAGCCGTCTAATTTGAGATCTTTT
TCTTTGCGAAAGGGataaaacaacatcaaaaggTGATGAGCATACTTCTC
TGGGTATAAATGACGATTTGGTGTGTATGTTCGGAGAACTTTTCTCACTT
TACGACATCTCATACATTCTTTAGAATTCATTAGGGGAATTTTCTTAGGA
AGCGGGTTTTCAACATGGTTTTCTTCAACAACAGTGTCATCAAGCACATT
AGGCTGACTGTCATTTATAAGTTCTGCATAAtccattttttttcaagttc
aaagttGCTGCAAAATTGTGCATAACATAAACTATCAATTTCTCTGTATT
TTCCGTTTGAAAAAGTTCTATTGGGTCGATCGATATATCTATCCAGtatg
tttttcttgaaaacatcTTCACTATCCTCAGGAAGCTCCGCCAATTCCTC
CTCAGACTTGAACATATGAAAACGCTCCTCTGGTAAATTAGTATTTACAA
ACATGACCTGAGGGTATCCTTTGCGCAACCAAAGTTCAGGCATCAACTGA
TAGACAACTTCTTGAACAGAACATTCTCTGTTATCACTGTATGCTTCAGC
TAACTTTTGCATTGTTTCAAACTTATCTTTTTCAAGTTCTTTAGACTCTG
CTAAACCCTCCTTCATTGCATTTGAGCTggaagtttcattttttgaaaag
tatgcACACATATATTGCACTGCTTTGTAATGATTAAATACTGGTTGGAG
ATCGATATTGGCTTGCCATGCCAAGAGTCCCTCTTCAAAATAGTTGTTTA
CAAAGCAAGAATTTGTATTTCTTTTAAGGTGAACATCAAAGTCATTTTCA
TCTGTGGATATTGATAACGCAACTTCATAATCAGTAAGCGAAATATCTAG
AGACtcaagaatattttgaatattttcatagTTTGGTCTTTCAGGgtaca
aaaagtttcttttttgaggatttagaaattcatcaatataatttctaact
tttgaaaatatttctttttgcttcAATTGAATTTGAtccgggttggtcta
aaaagcagggtagccaattggggtagccaattgggctaggttgtggggta
cctaaatattttacagaccagaatagaaataccgaaaatgaatgcataga
accacattttactgaccagggaccatgaatctgattgatacttagattga
tcacgtatgattccaaagataaacaaagatataaattaccacgtgttaat
gcacgaggagtaagaaatagagcttcattataatagagc Run BLAST on NCBI protein sequence of TCONS_00046439-protein >TCONS_00046439-protein ID=TCONS_00046439-protein|Name=TCONS_00046439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MCAYFSKNETSSSNAMKEGLAESKELEKDKFETMQKLAEAYSDNRECSVQ
EVVYQLMPELWLRKGYPQVMFVNTNLPEERFHMFKSEEELAELPEDSEDV
FKKNILDRYIDRPNRTFSNGKYREIDSLCYAQFCSNFELEKKWIMQNL Run BLAST on NCBI transcript from alignment at scaffold_11:117666..118954 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046439 ID=TCONS_00046439|Name=TCONS_00046439|organism=Clytia hemisphaerica|type=transcript|length=1289bp|location=Sequence derived from alignment at scaffold_11:117666..118954 (Clytia hemisphaerica)
gctctattataatgaagctctatttcttactcctcgtgcattaacacgtg
gtaatttatatctttgtttatctttggaatcatacgtgatcaatctaagt
atcaatcagattcatggtccctggtcagtaaaatgtggttctatgcattc
attttcggtatttctattctggtctgtaaaatatttaggtaccccacaac
ctagcccaattggctaccccaattggctaccctgctttttagaccaaccc
ggaTCAAATTCAATTgaagcaaaaagaaatattttcaaaagttagaaatt
atattgatgaatttctaaatcctcaaaaaagaaactttttgtacCCTGAA
AGACCAAActatgaaaatattcaaaatattcttgaGTCTCTAGATATTTC
GCTTACTGATTATGAAGTTGCGTTATCAATATCCACAGATGAAAATGACT
TTGATGTTCACCTTAAAAGAAATACAAATTCTTGCTTTGTAAACAACTAT
TTTGAAGAGGGACTCTTGGCATGGCAAGCCAATATCGATCTCCAACCAGT
ATTTAATCATTACAAAGCAGTGCAATATATGTGTgcatacttttcaaaaa
atgaaacttccAGCTCAAATGCAATGAAGGAGGGTTTAGCAGAGTCTAAA
GAACTTGAAAAAGATAAGTTTGAAACAATGCAAAAGTTAGCTGAAGCATA
CAGTGATAACAGAGAATGTTCTGTTCAAGAAGTTGTCTATCAGTTGATGC
CTGAACTTTGGTTGCGCAAAGGATACCCTCAGGTCATGTTTGTAAATACT
AATTTACCAGAGGAGCGTTTTCATATGTTCAAGTCTGAGGAGGAATTGGC
GGAGCTTCCTGAGGATAGTGAAgatgttttcaagaaaaacataCTGGATA
GATATATCGATCGACCCAATAGAACTTTTTCAAACGGAAAATACAGAGAA
ATTGATAGTTTATGTTATGCACAATTTTGCAGCaactttgaacttgaaaa
aaaatggaTTATGCAGAACTTATAAATGACAGTCAGCCTAATGTGCTTGA
TGACACTGTTGTTGAAGAAAACCATGTTGAAAACCCGCTTCCTAAGAAAA
TTCCCCTAATGAATTCTAAAGAATGTATGAGATGTCGTAAAGTGAGAAAA
GTTCTCCGAACATACACACCAAATCGTCATTTATACCCAGAGAAGTATGC
TCATCAccttttgatgttgttttatCCCTTTCGCAAAGAAAAAGATCTCA
AATTAGACGGCTCATATATGCTGAAATTGTCCAGTCCTG Coding sequence (CDS) from alignment at scaffold_11:117666..118954 >TCONS_00046439 ID=TCONS_00046439|Name=TCONS_00046439|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_11:117666..118954 (Clytia hemisphaerica)
ATGTGTgcatacttttcaaaaaatgaaacttccAGCTCAAATGCAATGAA
GGAGGGTTTAGCAGAGTCTAAAGAACTTGAAAAAGATAAGTTTGAAACAA
TGCAAAAGTTAGCTGAAGCATACAGTGATAACAGAGAATGTTCTGTTCAA
GAAGTTGTCTATCAGTTGATGCCTGAACTTTGGTTGCGCAAAGGATACCC
TCAGGTCATGTTTGTAAATACTAATTTACCAGAGGAGCGTTTTCATATGT
TCAAGTCTGAGGAGGAATTGGCGGAGCTTCCTGAGGATAGTGAAgatgtt
ttcaagaaaaacataCTGGATAGATATATCGATCGACCCAATAGAACTTT
TTCAAACGGAAAATACAGAGAAATTGATAGTTTATGTTATGCACAATTTT
GCAGCaactttgaacttgaaaaaaaatggaTTATGCAGAACTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046439-exon-scaffold_11-1491911889:117666..118954 | TCONS_00046439-exon-scaffold_11-1491911889:117666..118954 | Clytia hemisphaerica | exon |
| TCONS_00046439-exon-scaffold_11-1510915933:117666..118954 | TCONS_00046439-exon-scaffold_11-1510915933:117666..118954 | Clytia hemisphaerica | exon |
| TCONS_00046439-exon-scaffold_11-1575043694:117666..118954 | TCONS_00046439-exon-scaffold_11-1575043694:117666..118954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:117666..118954 . |
Blast
The following BLAST results are available for this feature:
|
