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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046447 ID=TCONS_00046447|Name=TCONS_00046447|organism=Clytia hemisphaerica|type=transcript|length=576bp
CAGGATTTCATTGAAAGATTTGACCGCTTGTTTGATTGTTTGGATGGAAT
TTCTTCTAAGAATTATGGTAAACCGGACAGAGCACCATACAGAAAAAGCA
CTATCGAGAAATATGGAAGATTTATGCTTGGTGTCCTTGACTGTCTAAAG
AAATGGCGAATAGAGGCAGAAGGTCAAACAGTTCTCACCAAAGAGGAACA
GGGAAAACATTGTCTCAGTCTTCAAACAGAGCAAGGATAGTATATGACAA
ttcATTCGTTCATCGACCTCACCAATACGTTGCTAGACGAGGAAGGTGTA
TCATTCCTGTTGAGTGAAAAGTTTTCACAGGACCCACTTGAAGAACATTT
TGGGAGACAACGCAGAGCAGGTGGAAACAATGAAAATCCTACttacaaac
aatttttaaaacaggaaatttctttaaataacaTGGGATATGATTTCATT
CAAACTATTAGACATGGGAATGCAAGTGGCAAAGATAAAGAACGAGTAAA
GATTGATGTAAATTACACTCGGGCCCTACCTCAAGCACCTAAATCGAAAA
AAAGAAAGACTAAATGAACTtagaat Run BLAST on NCBI protein sequence of TCONS_00046447-protein >TCONS_00046447-protein ID=TCONS_00046447-protein|Name=TCONS_00046447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MTIHSFIDLTNTLLDEEGVSFLLSEKFSQDPLEEHFGRQRRAGGNNENPT
YKQFLKQEISLNNMGYDFIQTIRHGNASGKDKERVKIDVNYTRALPQAPK
SKKRKTK Run BLAST on NCBI transcript from alignment at scaffold_110:10901..11910- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046447 ID=TCONS_00046447|Name=TCONS_00046447|organism=Clytia hemisphaerica|type=transcript|length=1010bp|location=Sequence derived from alignment at scaffold_110:10901..11910- (Clytia hemisphaerica)
CAGGATTTCATTGAAAGATTTGACCGCTTGTTTGATTGTTTGGATGGAAT
TTCTTCTAAGAATTATGGTAAACCGGACAGAGCACCATACAGAAAAAGCA
CTATCGAGAAATATGGAAGAGTAAAGATATACTTTTTGAATTTTTTTCAA
TTTTAAGTATTTTGTATATGCATCATATAATTACAAGTTTTTGTGTTGTG
CTATTTTGAATTTTTTTGTGTGGAAACTAACTTTTGATGATGAATTTTGA
TCATTGTTTGAATTATTTATTACAAAAATTTTGCGAAATCTATTATGGTT
GAAGCAAAAACCTTCAAATATCGTAATAATTAGTTCCCACAAACTTTTGC
TCCCAATCTGTATATATCAGGATAGACATTTTGGCTTGTTTCTTTCACTT
TTAGTTTATGCTTGGTGTCCTTGACTGTCTAAAGAAATGGCGAATAGAGG
CAGAAGGTCAAACAGTTCTCACCAAAGAGGAACAGGGAAAACATTGTCTC
AGTCTTCAAACAGAGCAAGGATAGTATATGACAAGTGAGTTTTGTTGTTT
TGCTTTATTAAAATTTTCCCCTTAGATTCTGTCTGGTTTAATACATTCGA
ATTTTGGTTTACTTTATAATTAGGTTGAATGGGAAGTGTTGTCTTTGAGA
TCATCACTTAAAATTTACATTCTTTATTTTTTAGTTCATTCGTTCATCGA
CCTCACCAATACGTTGCTAGACGAGGAAGGTGTATCATTCCTGTTGAGTG
AAAAGTTTTCACAGGACCCACTTGAAGAACATTTTGGGAGACAACGCAGA
GCAGGTGGAAACAATGAAAATCCTACTTACAAACAATTTTTAAAACAGGA
AATTTCTTTAAATAACATGGGATATGATTTCATTCAAACTATTAGACATG
GGAATGCAAGTGGCAAAGATAAAGAACGAGTAAAGATTGATGTAAATTAC
ACTCGGGCCCTACCTCAAGCACCTAAATCGAAAAAAAGAAAGACTAAATG
AACTTAGAAT Coding sequence (CDS) from alignment at scaffold_110:10901..11910- >TCONS_00046447 ID=TCONS_00046447|Name=TCONS_00046447|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_110:10901..11910- (Clytia hemisphaerica)
TTCATTCGTTCATCGACCTCACCAATACGTTGCTAGACGAGGAAGGTGTA
TCATTCCTGTTGAGTGAAAAGTTTTCACAGGACCCACTTGAAGAACATTT
TGGGAGACAACGCAGAGCAGGTGGAAACAATGAAAATCCTACTTACAAAC
AATTTTTAAAACAGGAAATTTCTTTAAATAACATGGGATATGATTTCATT
CAAACTATTAGACATGGGAATGCAAGTGGCAAAGATAAAGAACGAGTAAA
GATTGATGTAAATTACACTCGGGCCCTACCTCAAGCACCTAAATCGAAAA
AAAGAAAGACTAAATGAATGACAATTCATTCGTTCATCGACCTCACCAAT
ACGTTGCTAGACGAGGAAGGTGTATCATTCCTGTTGAGTGAAAAGTTTTC
ACAGGACCCACTTGAAGAACATTTTGGGAGACAACGCAGAGCAGGTGGAA
ACAATGAAAATCCTACTTACAAACAATTTTTAAAACAGGAAATTTCTTTA
AATAACATGGGATATGATTTCATTCAAACTATTAGACATGGGAATGCAAG
TGGCAAAGATAAAGAACGAGTAAAGATTGATGTAAATTACACTCGGGCCC
TACCTCAAGCACCTAAATCGAAAAAAAGAAAGACTAAATGAATGACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046447-exon-scaffold_110-1575043694:11791..11910 | TCONS_00046447-exon-scaffold_110-1575043694:11791..11910 | Clytia hemisphaerica | exon |
| TCONS_00046447-exon-scaffold_110-1575043694:11377..11506 | TCONS_00046447-exon-scaffold_110-1575043694:11377..11506 | Clytia hemisphaerica | exon |
| TCONS_00046447-exon-scaffold_110-1575043694:10901..11226 | TCONS_00046447-exon-scaffold_110-1575043694:10901..11226 | Clytia hemisphaerica | exon |
| TCONS_00046447-exon-scaffold_110-1510915933:11791..11910 | TCONS_00046447-exon-scaffold_110-1510915933:11791..11910 | Clytia hemisphaerica | exon |
| TCONS_00046447-exon-scaffold_110-1510915933:11377..11506 | TCONS_00046447-exon-scaffold_110-1510915933:11377..11506 | Clytia hemisphaerica | exon |
| TCONS_00046447-exon-scaffold_110-1510915933:10901..11226 | TCONS_00046447-exon-scaffold_110-1510915933:10901..11226 | Clytia hemisphaerica | exon |
| TCONS_00046447-exon-scaffold_110-1491911889:11791..11910 | TCONS_00046447-exon-scaffold_110-1491911889:11791..11910 | Clytia hemisphaerica | exon |
| TCONS_00046447-exon-scaffold_110-1491911889:11377..11506 | TCONS_00046447-exon-scaffold_110-1491911889:11377..11506 | Clytia hemisphaerica | exon |
| TCONS_00046447-exon-scaffold_110-1491911889:10901..11226 | TCONS_00046447-exon-scaffold_110-1491911889:10901..11226 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_110 | supercontig | scaffold_110:10901..11910 - |
Blast
The following BLAST results are available for this feature:
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