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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046545 ID=TCONS_00046545|Name=TCONS_00046545|organism=Clytia hemisphaerica|type=transcript|length=3130bpRun BLAST on NCBI transcript from alignment at scaffold_113:400343..410796- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046545 ID=TCONS_00046545|Name=TCONS_00046545|organism=Clytia hemisphaerica|type=transcript|length=10454bp|location=Sequence derived from alignment at scaffold_113:400343..410796- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046545 vs. Swiss-Prot (Human)
Match: DJC13 (DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1 SV=5) HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0 Identity = 334/576 (57.99%), Postives = 438/576 (76.04%), Query Frame = 3
Query: 6 NGTRAELTDFLE-QNEEATKSGKIDEAFGAEFTFDIHVQELIVGEIFVRIYNEQPTFPLEDPNKFGENLIDYLGSQAQYLHSLMALT-ASDIDTSKTSQHTARLDKIGMALEALRNVIKANPGVEVRCIGHFKLLFSLLRLTGAEKLQKLALEVISTVTGNGKCVQSIADADVXXXXXXXXXXXXXXXXXVLDTLYALMSNTKVVKEAMAKGALIYLLDLFCNSTNSPVRSRTAELFSKMMSDKLVGPKVRITLSKFLPVIFMEAMRDSPEASVQMFEANHENPELIWNDDAREKVSQTSQKFKDAHYQIQKDDPYATWRLPDTFMITLDDVSEEFVVGGVFLRLFISQPNWVLRKPKEFMVSLMDKFIALTTKPSQSTDMLETCTQAIVSLFSAQPPLADQIPSLGHIPQIFQVMGSSNDAVPKAALQVVHVLSSNELCVRTMAQTDSIRLLIVAMRARQDAMSLAAETLNRMFERNFTELVQQAXXXXXXXXXXXXXDS-PLQNVKNASGAKAQIVKALKSMMRDLSYGEQVNQILEASPVWSSFRDQKHDLFLSDNNIAGYLTGPVQTAGYLT 1724
N TRAEL +FLE Q E K G D+ +G+EF + H +ELIVGEIFVR+YNE PTF LE P F +L+DY+GSQAQYLH+ MA+T A+ +++ QH RL ++ MALEALRNVIK NPG E CIGHFKL+FSLLR+ GA ++Q+LALEV++ VT N CV +IA++ VL+ LL L++LPSSR LVL+TLYAL S+TK++KEAMAKGALIYLLD+FCNST+ VR++TAELF+KM +DKL+GPKVRITL KFLP +FM+AMRD+PEA+V +FE HENPELIWND++R+KVS T ++ H++ Q+D+P A W+LP+ F + + E VGGVFLR+FI+QP WVLRKP+EF+++L++K L K + + LET T A V LFSAQP LADQ+P LGH+P++ Q M N+A+PK+A++V+H LS NELCVR MA ++I L+ M+ R D + LA E +NRMF++ +ELV QAL+ DLV +LL +L+ L+N+ + + KAQIVKALK+M R L YGEQVN+IL S VWS+F+DQKHDLF+S++ AGYLTGP AGYLT
Sbjct: 1646 NSTRAELLEFLESQQENMIKKGDCDKTYGSEFVYSDHAKELIVGEIFVRVYNEVPTFQLEVPKAFAASLLDYIGSQAQYLHTFMAITHAAKVESE---QHGDRLPRVEMALEALRNVIKYNPGSESECIGHFKLIFSLLRVHGAGQVQQLALEVVNIVTSNQDCVNNIAESMVLSSLLALLHSLPSSRQLVLETLYALTSSTKIIKEAMAKGALIYLLDMFCNSTHPQVRAQTAELFAKMTADKLIGPKVRITLMKFLPSVFMDAMRDNPEAAVHIFEGTHENPELIWNDNSRDKVSTTVREMMLEHFKNQQDNPEANWKLPEDFAVVFGEAEGELAVGGVFLRIFIAQPAWVLRKPREFLIALLEKLTELLEKNNPHGETLETLTMATVCLFSAQPQLADQVPPLGHLPKVIQAMNHRNNAIPKSAIRVIHALSENELCVRAMASLETIGPLMNGMKKRADTVGLACEAINRMFQKEQSELVAQALKADLVPYLLKLLEGIGLENLDSPAATKAQIVKALKAMTRSLQYGEQVNEILCRSSVWSAFKDQKHDLFISESQTAGYLTGP-GVAGYLT 2217 The following BLAST results are available for this feature:
BLAST of TCONS_00046545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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