|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046593 ID=TCONS_00046593|Name=TCONS_00046593|organism=Clytia hemisphaerica|type=transcript|length=1517bpRun BLAST on NCBI protein sequence of TCONS_00046593-protein >TCONS_00046593-protein ID=TCONS_00046593-protein|Name=TCONS_00046593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp MESSLPVFIDIPEKEQANEIRQYLISAGADLTSTSKENILEEVSCLLDACRun BLAST on NCBI transcript from alignment at scaffold_114:61771..82281- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046593 ID=TCONS_00046593|Name=TCONS_00046593|organism=Clytia hemisphaerica|type=transcript|length=20511bp|location=Sequence derived from alignment at scaffold_114:61771..82281- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_114:61771..82281- >TCONS_00046593 ID=TCONS_00046593|Name=TCONS_00046593|organism=Clytia hemisphaerica|type=CDS|length=11400bp|location=Sequence derived from alignment at scaffold_114:61771..82281- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046593 vs. Swiss-Prot (Human)
Match: EIF3M (Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1) HSP 1 Score: 260.381 bits (664), Expect = 4.218e-81 Identity = 144/369 (39.02%), Postives = 231/369 (62.60%), Query Frame = 3
Query: 165 SLPVFIDIPEKEQANEIRQYLISAGADLTSTSKENILE-EVSCLLDACDNWLKSAADADLEALMNSFIYLILFCSFD--EKLTRKFCTKVTDVGASQSNALLRINILKNLFTALPATSGLRFDTYLGQVNLASKFGLTDDIETQLKVVDDWLNKWNVIIENRRTCYRDLHGALKDQQKSEEATRVILKLLSTYDESSATQAKEDAEKCVLDFIGKQDVFIMDHLLKLKPVEILAGQPIHKLLEILVSGQLSDYKEFYNANKEFVDKSGLVHDHIIEKMRILTMLSLAINNKEISFAQIKESLHLXXXXXXXXXXXXXKSGLAHAKIDQINEKIVIRSTSRRTFGKGEWEELQDRLQIWLDNLSLIKTSM 1262
S+P FIDI E++QA E+R YL S GA+++ + E L +++ +++ACD LK D D+E++MNS + L+L D E L C K+ + +L R+ +L NLF + + +R+ Y + +A+ G I T+L V W++ WN+ E + T R L+ AL D +KS+ A++V+++LL +Y E +A+QA+ DA +C++ + + F+ DHLL LKPV+ L G+ IH LL I VS +L+ Y +FY NK+F+D GL+H+ + KMR+LT + +A+ NKEISF +++ L + DD+E FVID V++ + + KIDQ K+V+ ++ RTFGK +W++L D L W NL+ +K S+
Sbjct: 2 SVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKED-DKDVESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSL-RLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDLLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQNLNKVKNSL 368 The following BLAST results are available for this feature:
BLAST of TCONS_00046593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.