|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046789 ID=TCONS_00046789|Name=TCONS_00046789|organism=Clytia hemisphaerica|type=transcript|length=3096bpRun BLAST on NCBI transcript from alignment at scaffold_117:28145..40957- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046789 ID=TCONS_00046789|Name=TCONS_00046789|organism=Clytia hemisphaerica|type=transcript|length=12813bp|location=Sequence derived from alignment at scaffold_117:28145..40957- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046789 vs. Swiss-Prot (Human)
Match: TCPR1 (Tectonin beta-propeller repeat-containing protein 1 OS=Homo sapiens GN=TECPR1 PE=1 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 1.249e-74 Identity = 181/538 (33.64%), Postives = 274/538 (50.93%), Query Frame = 1
Query: 991 INLSIANTMNTNWRRTILKEISQRNTKDQDFETSDLFQSATSSLSKWNKHCYCKCLVDPHYDIWVDAHLKIVARPHEQDATQTVRTLFVYYSLNEEFKEWTIDIQDLACVFQLRHASKPYTMALLAYDPDSLDVKEKVVLQFENEKLLNEWID--SLSGDHSSVLDS--GIQTI-ATSALGDIF--ELVVDKHTNE---KTPEYFWRPISGHLKKVIPGWNGICWGFGFDGIPYVRCDE-----FRPMESQESHV----------IYENQRWNPVEGFTARLLPSDRWEWSDVTGQMNCQKDSYVLPTSKCRWTDQWTIEYD-PKHFDKNGWQYAVDFPWEYHSYKSVYDYVRRRSWKRTCQVTSSGPWEEVKTDVKIQDLAISIE----KGSYH---VWAVSCYGDVLHRNGVTLENPKGTDWIQVQTDVPVKSISIGLKSRVWCVAEDSSCYVRAGIEKEKTIGSNWLHLPRET-QNICHLSIGKRVITAIDDKGIAYVRQDVTDIYPEGTSWRPLWENVTDISVNHLDQVAFVQN 2502
++LSI WR+ I +++++R ++ E ++ A S W K + D WVD L + ++ LF+YY ++EE K I + ++ + + + +K ++ AL Y P+ + V L E+ +N+W+ SLS S + Q I + + GDIF E D +E + FWR + GHL+ V G+ WG G+D +V F+ + S S++ IYENQRWNPV G+T+R LP+DR+ WSD +G C K P+ + W W +++ P D+ GWQYA DFP YH K++ D+VRRR W R C++ +SGPW EV + ++D++I E +GS H +WAVS GDVL R GV+ NP G+ W+ V TD P SISIG +VW VA D S + R + + G W H+P Q + +S G+ + A+D+ G + RQ +T YP+G+SW + NV +SV LDQV + N
Sbjct: 566 LSLSITPAQTAAWRKQIFQQLTERTKRE--LENFRHYEQAVEQ-SVWVKTGALQWWCDWKPHKWVDVRLALEQFTGHDGVRDSI--LFIYYVVHEEKKYIHIFLNEVVALVPVLNETK-HSFAL--YTPERTRQRWPVRLAAATEQDMNDWLALLSLSCCESRKVQGRPSPQAIWSITCKGDIFVSEPSPDLEAHEHPLPCDQMFWRQMGGHLRMVEANSRGVVWGIGYDHTAWVYTGGYGGGCFQGLASSTSNIYTQSDVKCVHIYENQRWNPVTGYTSRGLPTDRYMWSDASGLQECTKAGTKPPSLQWAWVSDWFVDFSVPGGTDQEGWQYASDFPASYHGSKTMKDFVRRRCWARKCKLVTSGPWLEVPP-IALRDVSIIPESPGAEGSGHSIALWAVSDKGDVLCRLGVSELNPAGSSWLHVGTDQPFASISIGACYQVWAVARDGSAFYRGSVYPSQPAGDCWYHIPSPPRQRLKQVSAGQTSVYALDENGNLWYRQGITPSYPQGSSWEHVSNNVCRVSVGPLDQVWVIAN 1094 HSP 2 Score: 176.792 bits (447), Expect = 6.403e-45 Identity = 120/304 (39.47%), Postives = 163/304 (53.62%), Query Frame = 1
Query: 7 GFSEKSLISTDRPHWSSKDGKTELKRENFRLPNDRWQWEGDWYLDKTI---QCDTNGWEYALDFPREYYGYKAKTSFVXXXXXXXXXXFIDFDTWTMIPTLLKDDP------FHDISVGGNLIPGQTQGFLSVWATTLTGRVFYRQGVSRTCLEGESW--VEIPMDDFNLVQISVGSSGRFWGVTWDGETVCRNGIDHCSPSGIEWEVVESPSGQQ-ITQISVGNYALWAVTKEKKVYFRSIGERKESQNTTTNKGWKSMIGEFLAVTVSSNDQV--VALSPDGLFIRTRVTADELVGREWKKL 876
GF EK L+S DR WS G + LP+ W+WE DWY+D+ + GW YA+DFP Y K S VRRR+WIR R++ D W IP+ KDDP F+D+SVGG I + G LSVWA +L G+V+YR+ VS + EG SW ++ P + +VQIS G W W+G+ + R GI+ +P G W +VE P + + ISVG +WAVTK+ KV+FR R + + W M+GE V V NDQV + ++ R VT EL G+ WK +
Sbjct: 82 GFCEKLLLS-DRWGWSDVSGLQHRPLDRVALPSPHWEWESDWYVDENFGGEPTEKGGWTYAIDFPATYTKDKKWNSCVRRRKWIRYRRYKSRDIWAKIPS--KDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSSWSLLDTPGE---VVQISCGPHDLLWATLWEGQALVREGINRSNPKGSSWSIVEPPGSENGVMHISVGVSVVWAVTKDWKVWFR----RGVNSHNPCGTSWIEMVGEMTMVNVGMNDQVWGIGCEDRAVYFRQGVTPSELSGKTWKAI 375 HSP 3 Score: 135.961 bits (341), Expect = 2.999e-32 Identity = 96/304 (31.58%), Postives = 135/304 (44.41%), Query Frame = 1
Query: 1630 CWGFGFDGIPYVR-CDEFRPMESQESHVIYENQRWNPVEGFTARLLPSDRWEWSDVTGQMNCQKDSYVLPTSKCRWTDQWTIE--YDPKHFDKNGWQYAVDFPWEYHSYKS------------VYDYVRRRSWKRTCQVTSSGPWEEVKTDVKIQDLAISIEK-GSYHVWAVSCYGDVLHRNGVTLENPKGTDWIQVQTDVPVKSISIGLKSRVWCVAEDSSCYVRAGIEKEKTIGSNW--LHLPRETQNICHLSIGKRVITAIDDKGIAYVRQDVTDIYPEGTSWRPLWENVTDISVNHLDQV 2487
CWG D YV C P+ +E YENQRWNP+ GF +LL SDRW WSDV+G + D LP+ W W ++ + + +K GW YA+DFP Y K Y R W + + D+ + I+ E G VWAVS G V +R V+ NP+G+ W + T V IS G +W + VR GI + GS+W + P + H+S+G V+ A+ + R+ V P GTSW + +T ++V DQV
Sbjct: 45 CWGIACDNQVYVYVCASDVPIRRREE--AYENQRWNPMGGFCEKLLLSDRWGWSDVSGLQHRPLDRVALPSPHWEWESDWYVDENFGGEPTEKGGWTYAIDFPATYTKDKKWNSCVRRRKWIRYRRYKSRDIWAKIPSKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSSWSLLDTPGEVVQISCGPHDLLWATLWEGQALVREGINRSNPKGSSWSIVEPPGSENGVMHISVGVSVVWAVTKDWKVWFRRGVNSHNPCGTSWIEMVGEMTMVNVGMNDQV 346 HSP 4 Score: 108.997 bits (271), Expect = 6.826e-24 Identity = 86/300 (28.67%), Postives = 135/300 (45.00%), Query Frame = 1
Query: 7 GFSEKSLISTDRPHWSSKDGKTELKRENFRLPNDRWQWEGDWYLDKTIQ--CDTNGWEYALDFPREYYGYKAKTSFVXXXXXXXXXXFIDFDTWTMIPTLLKDDPFHDISVGGNLIPGQTQGF-LSVWATTLTGRVFYRQGVSRTCLEGESWVEIPMDDFNLVQISVGSSGRFWGVTWDGETVCRNGIDHCSPSGIEWEVVESPSGQQITQISVGNYALWAVTKEKKVYFRSIGERKESQNTTTNKGWKSMIGEFLAVTVSSNDQV----------VALSPDGLFIRTRVTADELVGREW 867
G++ + L TDR WS G E + + P+ +W W DW++D ++ D GW+YA DFP Y+G K FVRRR W RK K + W +P + D+S+ + G +++WA + G V R GVS G SW+ + D IS+G+ + W V DG R + P+G W + SP Q++ Q+S G +++A+ + +++R Q ++ W+ + V+V DQV +LS + RT V E G W
Sbjct: 834 GYTSRGL-PTDRYMWSDASGLQECTKAGTKPPSLQWAWVSDWFVDFSVPGGTDQEGWQYASDFPASYHGSKTMKDFVRRRCWARKCKLVTSGPWLEVPPIA----LRDVSIIPESPGAEGSGHSIALWAVSDKGDVLCRLGVSELNPAGSSWLHVGTDQ-PFASISIGACYQVWAVARDGSAFYRGSVYPSQPAGDCWYHIPSPPRQRLKQVSAGQTSVYALDENGNLWYRQGITPSYPQGSS----WEHVSNNVCRVSVGPLDQVWVIANKVQGSHSLSRGTVCHRTGVQPHEPKGHGW 1123 The following BLAST results are available for this feature:
BLAST of TCONS_00046789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.