TCONS_00046835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046835
Unique NameTCONS_00046835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046835 ID=TCONS_00046835|Name=TCONS_00046835|organism=Clytia hemisphaerica|type=transcript|length=559bp
NGGGGGGGGGTCggaaaaatcttaattttaataaacggggggttatTAAC
CGGGGGATGGGAAATTGTACCTCTCAATACCAAAAAATAAGTTAATTTAG
AGCAAAATGAgggattcttttttttttacagtcgaaaatattttcaaaaa
gttactaAACGGGGGACCTTAAAAAGGTCTGGGGGTtcggcaaaaaaatt
gaaaaattaacaagcgggggctGTTTATTAAGCACCTGAGAGTATTCTTT
TAAACATCCAATTGAattcgccatttttttctccttttgcTCAATTCTTT
ACGATATGCCAACTCCGAAGGTCAACCCCTTGTTTACACATAATATTAAC
CATACAACATCTTCATACAATTAATACACATCACCAAGCAACAGAAACCA
AGGTCAGGTCGTTGAGCCTTTcatatttttcagtttctccATTTCTCGGC
GTACAGTCACACGAAAACCTTTAGAAATTGGTAACAGAGGAAATTGAGGA
TTGTTATCAGAATTTGTTGACGAGCTGGCGCCTTCCATTGATAACCAATG
CTCCATGCG
Run BLAST on NCBI

transcript from alignment at scaffold_117:147574..148132

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046835 ID=TCONS_00046835|Name=TCONS_00046835|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at scaffold_117:147574..148132 (Clytia hemisphaerica)
CGCATGGAGCATTGGTTATCAATGGAAGGCGCCAGCTCGTCAACAAATTC
TGATAACAATCCTCAATTTCCTCTGTTACCAATTTCTAAAGGTTTTCGTG
TGACTGTACGCCGAGAAATggagaaactgaaaaatatgAAAGGCTCAACG
ACCTGACCTTGGTTTCTGTTGCTTGGTGATGTGTATTAATTGTATGAAGA
TGTTGTATGGTTAATATTATGTGTAAACAAGGGGTTGACCTTCGGAGTTG
GCATATCGTAAAGAATTGAgcaaaaggagaaaaaaatggcgaatTCAATT
GGATGTTTAAAAGAATACTCTCAGGTGCTTAATAAACagcccccgcttgt
taatttttcaatttttttgccgaACCCCCAGACCTTTTTAAGGTCCCCCG
TTtagtaactttttgaaaatattttcgactgtaaaaaaaaaagaatcccT
CATTTTGCTCTAAATTAACTTATTTTTTGGTATTGAGAGGTACAATTTCC
CATCCCCCGGTTAataaccccccgtttattaaaattaagatttttccGAC
CCCCCCCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029879XLOC_029879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046835-exon-scaffold_117-1491911889:147574..148132TCONS_00046835-exon-scaffold_117-1491911889:147574..148132Clytia hemisphaericaexon
TCONS_00046835-exon-scaffold_117-1510915933:147574..148132TCONS_00046835-exon-scaffold_117-1510915933:147574..148132Clytia hemisphaericaexon
TCONS_00046835-exon-scaffold_117-1575043694:147574..148132TCONS_00046835-exon-scaffold_117-1575043694:147574..148132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:147574..148132 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.2047	12.4547	36.9561	42.6684	24.6053	18.0392	12.1198	14.8846	7.51681	13.2255	10.2696	4.18553	7.28078	7.63118	10.1303	10.9949	8.59866	9.98326	5.27991	8.79497	4.80227	5.3062	15.8063	14.2646	15.7805	18.1632	8.75646	6.52676	17.3261	17.3087
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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