TCONS_00046972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046972
Unique NameTCONS_00046972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046972 ID=TCONS_00046972|Name=TCONS_00046972|organism=Clytia hemisphaerica|type=transcript|length=1283bp
tttagtaCTAGAAGTAAAAAGAAGTGAATTTCAAGCAGGAGACATGTCTT
CGTACATTTCCATAGCAAATGCTATCAAGGAGATTGAGTATTGGCTTCGA
TTAGCCACCTTACTGCATGAACCACTCAAAGAATCGCTGCTCAACATCCT
TCATAATCACTACAATCGAACCGACTATGTTGGCCTCCCATCCAACCCTA
CCTTTCTCAACGCTGAGCTACGAAAACACCAACATAGAATCAACCAAATG
CAAACTAAAAGAGTTCTTAACAAGGACCAAGTTGAACTTTTACTGCCAAC
CGGGAGTACACAAACCGATAGCTCAACCTTTGATGTTACTTTAATCATAT
TTTTGATTATCGAGTTCACAAACCTTCCTCCGCCCAGCAGAGGTTGGAAA
AAAGATCCATTATATACCGATACAAGTTTAGCAGCTTTCGTTTTACGTGC
TCGCAAATGGAGAAATGACTTACTACACGATGATCCAAAAAGTATCACTT
TGAACGATTTCAATAATCGATGGACTGAAGGCGTTAATATAATTCATGGT
CTGTTTTTTGTCAATTACGATACAAATAGACTGAAAACTATGACTTTAGA
TGTACACAACAGAACTGtatttaaatctttaaaatttttctctaaaaaga
tTATCGGAAAGCAAACCGCTCATGACACTCAACTTGCCGCCCATGACACT
CAACTTGCCGCCCATGACACTCAACTTGCCAACCATGACAATAAACTCGC
CGCCCATGGCACTCAACTTGCCACCCAAGACAATAAACTCACCGCCCATG
ACAACCAACTTACCATTCAAGACAGTAAACTAACCGCCCATGACAACCAA
CTTACCACACAAGACAATAAACTCACCGCCCATGACAACCAACTTACCAC
ACAAGACAATAAACTTACCGCCCATGACAACCAACTTACCACACAAGACA
ATAAACTTACCGCCCATGATAACCAACTTACCGCCCAAGACAATAAACTT
ACCGCCCATGACAACCACCTTACCACCCAAGACAATAAACTCACCACCCA
TGACAACCAACTTACCGTTCATGATGACCTTCTTACCATCCATAACAACC
ATCTTACCGCCCATGAAAACCAACTTACCGCCAACAACAACCATCTCACT
ACCCATAACAATCAGCTCAATGTGTTAACCGAGAGACTTTCAGAAGATGA
GTCGAAGTTCGTTGAAATGGTGGACCGTCTGGAGAAGGAACTAAATTTCA
TCAAAGATAATCTTAAGGGAAACCAGATCAACG
Run BLAST on NCBI

transcript from alignment at scaffold_119:177145..178889+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046972 ID=TCONS_00046972|Name=TCONS_00046972|organism=Clytia hemisphaerica|type=transcript|length=1745bp|location=Sequence derived from alignment at scaffold_119:177145..178889+ (Clytia hemisphaerica)
tttagtaCTAGAAGTAAAAAGAAGTGAATTTCAAGCAGGAGACATGTCTT
CGTACATTTCCATAGCAAATGCTATCAAGGAGATTGAGTATTGGCTTCGA
TTAGCCACCTTACTGCATGAACCACTCAAAGAATCGCTGCTCAACATCCT
TCATAATCACTACAATCGAACCGACTATGTTGGCCTCCCATCCAACCCTA
CCTTTCTCAACGCTGAGCTACGAAAACACCAACATAGAATCAACCAAATG
CAAACTAAAAGAGTTCTTAACAAGGACCAAGTTGAACTTTTACTGCCAAC
CGGGAGTACACAAACCGATAGCTCAACCTTTGATGTTACTTTAATCATAT
TTTTGATTATCGAGTTCACAAACCTTCCTCCGCCCAGCAGAGGTTGGAAA
AAAGATCCATTATATACCGATACAAGTTTAGCAGCTTTCGTTTTACGTGC
TCGCAAATGGAGAAATGACTTACTACACGATGATCCAAAAAGTATCACTT
TGAACGATTTCAATAATCGATGGACTGAAGGCGTTAATATAATTCATGGT
CTGTTTTTTGTCAATTACGATACAAATAGACTGAAAACTATGACTTTAGA
TGTACACAACAGAACTGtatttaaatctttaaaatttttctctaaaaaga
tTATCGGAAAGCAAACCGCTCATGACACTCAACTTGCCGCCCATGACACT
CAACTTGCCGCCCATGACACTCAACTTGCCAACCATGACAATAAACTCGC
CGCCCATGGCACTCAACTTGCCACCCATGACAATAAACTGACCACCCATG
ACAACCAACTTACAATTCAAGACAATAAACTCACCGCCCATGACAACCAA
CTTACCATTCAAGACAGTAAACTAACCGCCCATGACAACCAACTTACCAC
ACAAGACAATAAACTCACCGCCCATGACAACCAACTTACCACACAAGACA
ATAAACTGACCACCCATGACAACCAACTTACCAAACAAGACAATAAACTG
ACCACCCATGACAACCAACTTACCATTCAAGACAATAAACTCACCGCCCA
TGACAACCAACTTACCATTCAAAACAATAAACTCACCGCCCATGACAACC
AACTTACCATTCAAAACAATAAACTCACCGCCCATGACAACCAACTTACC
ATTCAAGACAGTAAACTAACCGCCCATGACAACCAACTTACCACACAAGA
CAATAAACTCACCGCCCATGACAACCAACTTACCACACAAGACAATAAAC
TCACCGCCCATGACAACCAACTTACCATTCAAGACAGTAAACTAACCGCC
CATGACAACCAACTTACCACACAAGACAATAAACTCACCGCCCATGACAA
CCAACTTACCACACAAGACAATAAACTTACCGCCCATGACAACCAACTTA
CCACACAAGACAATAAACTTACCGCCCATGATAACCAACTTACCGCCCAA
GACAATAAACTTACCGCCCATGACAACCACCTTACCACCCAAGACAATAA
ACTCACCACCCATGACAACCAACTTACCGTTCATGATGACCTTCTTACCA
TCCATAACAACCATCTTACCGCCCATGAAAACCAACTTACCGCCAACAAC
AACCATCTCACTACCCATAACAATCAGCTCAATGTGTTAACCGAGAGACT
TTCAGAAGATGAGTCGAAGTTCGTTGAAATGGTGGACCGTCTGGAGAAGG
AACTAAATTTCATCAAAGATAATCTTAAGGGAAACCAGATCAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029968XLOC_029968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046972-exon-scaffold_119-1491911889:177145..177920TCONS_00046972-exon-scaffold_119-1491911889:177145..177920Clytia hemisphaericaexon
TCONS_00046972-exon-scaffold_119-1510915933:177145..177920TCONS_00046972-exon-scaffold_119-1510915933:177145..177920Clytia hemisphaericaexon
TCONS_00046972-exon-scaffold_119-1575043694:177145..177920TCONS_00046972-exon-scaffold_119-1575043694:177145..177920Clytia hemisphaericaexon
TCONS_00046972-exon-scaffold_119-1491911889:178383..178889TCONS_00046972-exon-scaffold_119-1491911889:178383..178889Clytia hemisphaericaexon
TCONS_00046972-exon-scaffold_119-1510915933:178383..178889TCONS_00046972-exon-scaffold_119-1510915933:178383..178889Clytia hemisphaericaexon
TCONS_00046972-exon-scaffold_119-1575043694:178383..178889TCONS_00046972-exon-scaffold_119-1575043694:178383..178889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_119supercontigscaffold_119:177145..178889 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0445472	0	0	0.083522	0.283067	0	0.0834107	0.281285	4.99891	2.62946	0	0.257371	0	0.470997	11.2835	10.7618	0.282439	0	0	0	0.0894845	0.618736	0.579131	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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