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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047027 ID=TCONS_00047027|Name=TCONS_00047027|organism=Clytia hemisphaerica|type=transcript|length=3511bpRun BLAST on NCBI protein sequence of TCONS_00047027-protein >TCONS_00047027-protein ID=TCONS_00047027-protein|Name=TCONS_00047027-protein|organism=Clytia hemisphaerica|type=polypeptide|length=957bp MAYRFKVSKYKNANAQMPKKEQCISEIPIGRIMSSCGNFVTCSAKHIAFNRun BLAST on NCBI transcript from alignment at scaffold_120:127656..161767- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047027 ID=TCONS_00047027|Name=TCONS_00047027|organism=Clytia hemisphaerica|type=transcript|length=34112bp|location=Sequence derived from alignment at scaffold_120:127656..161767- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_120:127656..161767- >TCONS_00047027 ID=TCONS_00047027|Name=TCONS_00047027|organism=Clytia hemisphaerica|type=CDS|length=83346bp|location=Sequence derived from alignment at scaffold_120:127656..161767- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047027 vs. Swiss-Prot (Human)
Match: CORO7 (Coronin-7 OS=Homo sapiens GN=CORO7 PE=1 SV=2) HSP 1 Score: 377.096 bits (967), Expect = 9.641e-113 Identity = 192/455 (42.20%), Postives = 274/455 (60.22%), Query Frame = 3
Query: 1710 SKYKHLLGKLMHKDNNIENITKLAENLPSESDAFQGSNDYLVYPISGVGGRLNVVQLSKPGRLPESDYPVIQNGCGIADFAMDPFDNQNIAVGCDDWKIRLWRIPKNGLSETLTEPTQTLVGHKQRVTIVRYHPTASNILVSASMDNTVRVWDLSDFSEIGALEGHTNQILCLAWHPDGKYMATFCKDKKIRVYNPVDDVEVLREGEGPDVLRGGRICWCGPNNNWLAISTSTGSNRFLHLYDSHTME--QLGEIEVDESPSVLSLYYDESSSVLFATGKGDRTIHSFEISEVEPKIHHLSIIKASGLLQGISLYQKNLLGIKNIEMARIVCLKKTNIELVSVTIPRVKPEFFQDDLFPDAQVTWEPAMTGEQWLDGNTTQPTKISLQPKGMKKLSXXXXXXXXXXXYSSQQILSAKSDEEKKAELINAMVGKLG-LDDRLEQDDFEGVDEDEWD 3065
SK++H G ++H+D++I N+ L P ESD F + + P+ GG++ V++L KPGRLP++ P +QNG + D A DPFD +AV +D +IRLWR+P GL E LT P L GH +++ +R+HP A+N+L S+S D TVR+WDL ++ L+GH +QI LAW PDG+ +AT CKD ++RVY P E L+EG GP RG RI W L + S R L LY++ + L + +D +PS L YD + ++ TGKGD + +E+ P + + +G+ L K ++ +E+ R + L+++++E V+ +PRV+ EFFQDD+FPD V WEP ++ E WL G QP +SLQP M +S+AP+EAP SS Q L KSD++KK EL+NAMV KLG +D L QD FEGVDEDEWD
Sbjct: 471 SKFRHAQGTVLHRDSHITNLKGLNLTTPGESDGFCANKLRVAVPLLSSGGQVAVLELRKPGRLPDTALPTLQNGAAVTDLAWDPFDPHRLAVAGEDARIRLWRVPAEGLEEVLTTPETVLTGHTEKICSLRFHPLAANVLASSSYDLTVRIWDLQAGADRLKLQGHQDQIFSLAWSPDGQQLATVCKDGRVRVYRPRSGPEPLQEGPGPKGGRGARIVWVCDGRCLLVSGFDSQSERQLLLYEAEALAGGPLAVLGLDVAPSTLLPSYDPDTGLVLLTGKGDTRVFLYELLPESPFFLECNSFTSPDPHKGLVLLPKTECDVREVELMRCLRLRQSSLEPVAFRLPRVRKEFFQDDVFPDTAVIWEPVLSAEAWLQGANGQPWLLSLQPPDMSPVSQAPREAPARRAPSSAQYLEEKSDQQKKEELLNAMVAKLGNREDPLPQDSFEGVDEDEWD 925 HSP 2 Score: 223.787 bits (569), Expect = 3.387e-60 Identity = 139/406 (34.24%), Postives = 212/406 (52.22%), Query Frame = 3
Query: 207 RFKVSKYKNANAQMPKKEQCISEIPIGRIMSSCGNFVTCSAKHIAFNIESGGGGCAGVLPLNYAGRRNTKVPTIFAHGEFLNDMCFSPYDDDLLVTCSYDGNVKLWDIPDDLEDIHDQPLSVITPDETTKKLEMINFHPLADEVLACSAFDAIHFLDLNSGETQTCVENGTQS-LFQSMSWRWDGKVMVASSKDCINRIIDPRAG-NVTSSFPGTQGNKDSRLVWLGNTDYILGSGFDKMRNRMVVIYDIRNPSSFVDDHEATSGSGVLMPFHDIDTNMVFLAGKGDQNIQLYEF--DNAKLQFFSTASLQQQTFGMGLAPKRSLNVMQGEVNKVYQLSKNTITPIPYIVPRKSYRDFHADLFPDTVYSGRASMDAVEWFGGQSKEGITMSLNPQSSSKKVISSGL 1412
RF+VSK+++ A+ P++E IS+I G SC N + S IAFN S G G++PL G +V + H + + D+ FSP+DD LL T S D VKLW +P + + P V+ P++ +E++ FHP +D +L +A + D + + Q E L QS W DG ++ + KD RI DPR + S + ++DSRL W+G ++++ +GF++MR R V ++D R SS + + G L+P D D+ ++ LAGKG++ + YE L + L+ G L P+++L VM EV +V QLS I PI Y VPRK+ +FH DLFPDT A+ D W+ G +++ +SLNP +S L
Sbjct: 3 RFRVSKFRHTEARPPRRESWISDIRAG-TAPSCRNHIKSSCSLIAFN--SDRPGVLGIVPLQGQGEDKRRVAHLGCHSDLVTDLDFSPFDDFLLATGSADRTVKLWRLPGPGQALPSAPGVVLGPEDL--PVEVLQFHPTSDGILVSAAGTTVKVWD--AAKQQPLTELAAHGDLVQSAVWSRDGALVGTACKDKQLRIFDPRTKPRASQSTQAHENSRDSRLAWMGTWEHLVSTGFNQMREREVKLWDTRFFSSALASLTLDTSLGCLVPLLDPDSGLLVLAGKGERQLYCYEVVPQQPALSPVTQCVLESVLRGAALVPRQALAVMSCEVLRVLQLSDTAIVPIGYHVPRKAV-EFHEDLFPDTAGCVPAT-DPHSWWAGDNQQVQKVSLNPACRPHPSFTSCL 399 HSP 3 Score: 160.229 bits (404), Expect = 7.773e-40 Identity = 113/397 (28.46%), Postives = 195/397 (49.12%), Query Frame = 3
Query: 219 SKYKNANAQMPKKEQCISEIPIGRIMSSCGNFVTCSAK-HIAFNIESGGGGCAGVLPLNYAGR-RNTKVPTIFAHGEFLNDMCFSPYDDDLLVTCSYDGNVKLWDIP-DDLEDIHDQPLSVITPDETTKKLEMINFHPLADEVLACSAFD-AIHFLDLNSGETQTCVENGTQSLFQSMSWRWDGKVMVASSKDCINRIIDPRAG-NVTSSFPGTQGNKDSRLVWLGNTDYILGSGFDKMRNRMVVIYDIR----NPSSFVDDHEATSGSGVLMPFHDIDTNMVFLAGKGDQNIQLYEFDNAKLQFFSTASLQQQT--FGMGLAPKRSLNVMQGEVNKVYQLSKNTITPIPYIVPRKSYRDFHADLFPDTVYSGRASMDAVEWFGGQSKEGITMSLNP 1376
SK+++A + ++ I+ + + + + C+ K +A + S GG A VL L GR +T +PT+ +G + D+ + P+D L D ++LW +P + LE++ P +V+T T+K+ + FHPLA VLA S++D + DL +G + ++ +F S++W DG+ + KD R+ PR+G PG +G + +R+VW+ + +L SGFD R +++Y+ P + + A S L+P +D DT +V L GKGD + LYE F S G+ L PK +V + E+ + +L ++++ P+ + +PR F D+FPDT + A W G + + +SL P
Sbjct: 471 SKFRHAQGTVLHRDSHITNLKGLNLTTPGESDGFCANKLRVAVPLLSSGGQVA-VLELRKPGRLPDTALPTL-QNGAAVTDLAWDPFDPHRLAVAGEDARIRLWRVPAEGLEEVLTTPETVLT--GHTEKICSLRFHPLAANVLASSSYDLTVRIWDLQAGADRLKLQGHQDQIF-SLAWSPDGQQLATVCKDGRVRVYRPRSGPEPLQEGPGPKGGRGARIVWVCDGRCLLVSGFDSQSERQLLLYEAEALAGGPLAVLGLDVAPS---TLLPSYDPDTGLVLLTGKGDTRVFLYELLPESPFFLECNSFTSPDPHKGLVLLPKTECDVREVELMRCLRLRQSSLEPVAFRLPRVRKEFFQDDVFPDTAVIWEPVLSAEAWLQGANGQPWLLSLQP 859 HSP 4 Score: 149.443 bits (376), Expect = 1.740e-36 Identity = 106/391 (27.11%), Postives = 180/391 (46.04%), Query Frame = 3
Query: 1710 SKYKHLLGKLMHKDNNIENITKLAENLPSESDAFQGSNDYLVYPISGVGGRLNVVQLSKPGRLPESDYPVIQNGCG---IADFAMDPFDNQNIAVGCDDWKIRLWRIPKNGLSETLTEPTQTLVGHKQRVTIVRYHPTASNILVSASMDNTVRVWDLSDFSEIGALEGHTNQILCLAWHPDGKYMATFCKDKKIRVYNPVDDVEVLREGEGPDVLRGGRICWCGPNNNWLAISTSTGSNRFLHLYDSHTMEQ-LGEIEVDESPSVLSLYYDESSSVLFATGKGDRTIHSFEISEVEPKIHHLSIIKASGLLQGISLYQKNLLGIKNIEMARIVCLKKTNIELVSVTIPRVKPEFFQDDLFPDAQVTWEPAMTGEQWLDGNTTQPTKISLQP 2870
SK++H + +++ I +I A PS + + S + + S G L +V L G E V GC + D PFD+ +A G D ++LWR+P G + + P L V ++++HPT+ ILVSA+ TV+VWD + + L H + + W DG + T CKDK++R+++P + + + R R+ W G + ++ + R + L+D+ L + +D S L D S +L GKG+R ++ +E+ +P + ++ +L+G +L + L + + E+ R++ L T I + +PR E F +DLFPD PA W G+ Q K+SL P
Sbjct: 7 SKFRHTEARPPRRESWISDIR--AGTAPSCRNHIKSSCSLIAF-NSDRPGVLGIVPLQGQG---EDKRRVAHLGCHSDLVTDLDFSPFDDFLLATGSADRTVKLWRLPGPGQALP-SAPGVVLGPEDLPVEVLQFHPTSDGILVSAA-GTTVKVWDAAKQQPLTELAAHGDLVQSAVWSRDGALVGTACKDKQLRIFDPRTKPRASQSTQAHENSRDSRLAWMGTWEHLVSTGFNQMREREVKLWDTRFFSSALASLTLDTSLGCLVPLLDPDSGLLVLAGKGERQLYCYEVVPQQPALSPVTQCVLESVLRGAALVPRQALAVMSCEVLRVLQLSDTAIVPIGYHVPRKAVE-FHEDLFPDT-AGCVPATDPHSWWAGDNQQVQKVSLNP 387 The following BLAST results are available for this feature:
BLAST of TCONS_00047027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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