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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047084 ID=TCONS_00047084|Name=TCONS_00047084|organism=Clytia hemisphaerica|type=transcript|length=945bp
GAGTATTTTGTGAtgttgtttggaagaaaatgcgGAAGTATCTTCAATGC
ATTTCTCTAGAAAAGCAAAGTAAGACTTAGACTGTTGTGCGAGATTGTAG
ACAAAGCaaagtagcgagttgataaagtaatagataaacgaatgaatgaa
gTTACGAggtagcgagtttataaagcaatggataaacaaacaaataaagt
agcgaagtactAGTTGATAAAGCAAAAGATAAACGAGTAAATAAAGTTGC
GATTTTATAAAGCAATATCAACGAAcaaataaagtagcgaagtagcaagt
tgataaatcaataaataaacgaatgaataaagttgCGAAGTaacgagttt
ataaagcaatgaataaacgaatgaataaagttgCGAAGTaacgagtttat
aaagcaatgaataaacaaatgaataaagtagcaaaGTAACAAGGGGATAA
AGCAATCGTTAAccaagtgaataaagtagcaagGTAgagagtttataaag
caatagacaAACAAATAAATGAAGTTtagcaaaataggtgttttcttaaa
aaatttttacttcgcatttttgagttgagaaatctttttgggttgctaaa
tctaaaattcacaTCGCATTTTACGAAGTGCATTCGAAGTGCgaagctat
aattcgaaccctgaaACCATACCTTTATTTGTCATGACTTGTATAatttt
accctgtcaaggtattGACTTCTTAGAGATTTTCAGGTCTCTTTAGTTGA
AAAGTAACTCATATTCCAATTCAGTAAGGGGCTGCAGGACTGCAGCAAAC
GGGCTGTAAACCCTGCTAGTGtctataaaattttaaatttccatTTGAGG
GGTTAGGACATTCTCCAATCTCCTTTAAAGAATCAAAAGACTGAAGAGAG
GAGCTTGTTATTGTTGTTCTTGCATACAGTACCCATATACAGCAG Run BLAST on NCBI transcript from alignment at scaffold_120:89012..89956 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047084 ID=TCONS_00047084|Name=TCONS_00047084|organism=Clytia hemisphaerica|type=transcript|length=945bp|location=Sequence derived from alignment at scaffold_120:89012..89956 (Clytia hemisphaerica)
CTGCTGTATATGGGTACTGTATGCAAGAACAACAATAACAAGCTCCTCTC
TTCAGTCTTTTGATTCTTTAAAGGAGATTGGAGAATGTCCTAACCCCTCA
AatggaaatttaaaattttatagaCACTAGCAGGGTTTACAGCCCGTTTG
CTGCAGTCCTGCAGCCCCTTACTGAATTGGAATATGAGTTACTTTTCAAC
TAAAGAGACCTGAAAATCTCTAAGAAGTCaataccttgacagggtaaaat
TATACAAGTCATGACAAATAAAGGTATGGTttcagggttcgaattatagc
ttcGCACTTCGAATGCACTTCGTAAAATGCGAtgtgaattttagatttag
caacccaaaaagatttctcaactcaaaaatgcgaagtaaaaattttttaa
gaaaacacctattttgctaAACTTCATTTATTTGTTtgtctattgcttta
taaactctcTACcttgctactttattcacttggTTAACGATTGCTTTATC
CCCTTGTTACtttgctactttattcatttgtttattcattgctttataaa
ctcgttACTTCGcaactttattcattcgtttattcattgctttataaact
cgttACTTCGcaactttattcattcgtttatttattgatttatcaacttg
ctacttcgctactttatttgTTCGTTGATATTGCTTTATAAAATCGCAAC
TTTATTTACTCGTTTATCTTTTGCTTTATCAACTagtacttcgctacttt
atttgtttgtttatccattgctttataaactcgctaccTCGTAActtcat
tcattcgtttatctattactttatcaactcgctactttGCTTTGTCTACA
ATCTCGCACAACAGTCTAAGTCTTACTTTGCTTTTCTAGAGAAATGCATT
GAAGATACTTCcgcattttcttccaaacaacaTCACAAAATACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047084-exon-scaffold_120-1491911889:89012..89956 | TCONS_00047084-exon-scaffold_120-1491911889:89012..89956 | Clytia hemisphaerica | exon |
| TCONS_00047084-exon-scaffold_120-1510915933:89012..89956 | TCONS_00047084-exon-scaffold_120-1510915933:89012..89956 | Clytia hemisphaerica | exon |
| TCONS_00047084-exon-scaffold_120-1575043694:89012..89956 | TCONS_00047084-exon-scaffold_120-1575043694:89012..89956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:89012..89956 . |
Blast
The following BLAST results are available for this feature:
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