|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047100 ID=TCONS_00047100|Name=TCONS_00047100|organism=Clytia hemisphaerica|type=transcript|length=1672bp
taggttataaaaaaagtttagaaaaaaaaaaatggctgaTCGTTTGACGC
AACTTCAAGATCAAGTGAATAAATTGGCTGAGTGTTTTTGTGATAGCATT
GGTGTAATACAGCAAACTGCTCATCCGAATAACCAGCAACAGCAGCAACA
ACCTCCACAACaacaaacaaatgaaaacaaCAAGCCAATAGACCCAAACA
ATCCTCCTGATCCACAACAACCTGAAGAAAATTATTCCCAATTTTTCGCA
TCCATGATTGCACGCACTGTCAAAGATATTGATCATTTAATAGATGCTTT
ACCAAGTGAGAAATCAACCACGGAACTTCAAATGAAAAGCCTTAAAcagc
ttgaaaatgaaaatgaggtTGCTTATGAAGAACTGCAGAAAGCTGTTGCT
GAAGGAGAATCTCTTTTGGAAGAGATCAGGTCAGCCTCATCACAAATTGC
TAATAATTTACTTAGCTCCAGGACTAGTGGTAAAATCAGTGACTCTTAAA
TTACATGACTACGATCTCACAGGAgcgattttcagttttattgGCCTCGT
CAACCCTTATGCCACAAAAAGCTTGGGTTCAAGTTTACATAGGTTGAATG
ACGTCGTAATGCAATTGGCCAATGGAACGGCTTCCGAAATTTGATTTCAT
TCCACCCAGATAAGCTCAAACCTCTGATCCCTTGAATGCTGTTTTTTTGG
ATTGATAGGTGTCTTGGCTCTTGTTGATAAGCATTTATCAACCCTTACGT
CACAAAAGGAATGGCTCCGAGCTTACATGGGACGATTGGTGTCAAAATGT
CGAATTGACAGACAATTTACTTTATTTGACCCTAATATAATAATCGAACT
TATCCCGCGTCATCTTTGGTGCAAGAATTGAGATAAGTGCACTTGTCCGC
GTAGATTGGTGCGAGGATTTCGTTAGACCTTTCTTATCATACCCTCAGGT
GCCTAACCGCCCCTGCcctctttttatttaaattccTCAAGCTCTTGACC
ATTATTAGGACCCCgtcgtttattaattttgaaaacattgcTTTTAGCTG
TCAAGAGAATTGCCCCTTGTTTTGCTTTAAACGGCCTGGTTTCCCAACAC
AATCCCCTAATCCCCTATCAAGGCACTTAAGAGTAAGGTAGAGATggaaa
aaaacatgaaactcGAAGTATAGAACAGAAGACAGAAtttacaacaaaaa
aaaaccgcgaagatgaaaaagaaaacctcAGTGACGTATTGACAAAGAAA
gagatgaagaaaaaagaacgagAAAATTTCCCTCTTTTTGATAAGCCAAT
TTCATTGGAGACACTGGCTTTAATAAATCATCGACTTTTGGGGAAAAAAA
ACAGTGGAGAGTTTTTTTGTACATTCATTCTACGTGATGATGGAAGTTTT
TAAGTTCTTGTGTAAGAAATCTTTTCCATCGAAGAACATTGCAGTGATCT
TAAACTTTCTATGtaaatttttatattgattatCTAAATTacaattcaaa
ccaaatgtctGTTTTTAGGGGTTGAATTTTTAAGCCCCTCTCACCCCGAT
GTCAATTATGCTTGTGTGCTTTAGAGAATGCATCTAACGTTTCTCAATAT
TCATACCTAGAATCACAAAATTTATATTTGCTGGAATAGTGACAACACTA
CCTGAAAACTAGAACTATTCTT Run BLAST on NCBI protein sequence of TCONS_00047100-protein >TCONS_00047100-protein ID=TCONS_00047100-protein|Name=TCONS_00047100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MADRLTQLQDQVNKLAECFCDSIGVIQQTAHPNNQQQQQQPPQQQTNENN
KPIDPNNPPDPQQPEENYSQFFASMIARTVKDIDHLIDALPSEKSTTELQ
MKSLKQLENENEVAYEELQKAVAEGESLLEEIRSASSQIANNLLSSRTSG
KISDS Run BLAST on NCBI transcript from alignment at scaffold_121:10530..13920+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047100 ID=TCONS_00047100|Name=TCONS_00047100|organism=Clytia hemisphaerica|type=transcript|length=3391bp|location=Sequence derived from alignment at scaffold_121:10530..13920+ (Clytia hemisphaerica)
taggttataaaaaaagtttagaaaaaaaaaaatggctgaTCGTTTGACGC
AACTTCAAGATCAAGTGAATAAATTGGCTGAGTGTTTTTGTGATAGCATT
GGTGTAATACAGCAAACTGCTCATCCGAATAACCAGCAACAGCAGCAACA
ACCTCCACAACaacaaacaaatgaaaacaaCAAGCCAATAGACCCAAACA
ATCCTCCTGATCCACAACAACCTGAAGAAAATTATTCCCAATTTTTCGCA
TCCATGATTGCACGCACTGTCAAAGATATTGATCATTTAATAGATGCTTT
ACCAAGTGAGAAATCAACCACGGAACTTCAAATGAAAAGCCTTAAAcagc
ttgaaaatgaaaatgaggtTGCTTATGAAGAACTGCAGAAAGCTGTTGCT
GAAGGAGAATCTCTTTTGGAAGAGATCAGGTCAGCCTCATCACAAATTGC
TAATAATTTACTTAGCTCCAGGACTAGTGGTAAAATCAGTGACTCTTAAA
TTACATGACTACGATCTCACAGGAgcgattttcagttttattgGCCTCGT
CAACCCTTATGCCACAAAAAGCTTGGGTTCAAGTTTACATAGGTTGAATG
ACGTCGTAATGCAATTGGCCAATGGAACGGCTTCCGAAATTTGATTTCAT
TCCACCCAGATAAGCTCAAACCTCTGATCCCTTGAATGCTGTTTTTTTGG
ATTGATAGGTGTCTTGGCTCTTGTTGATAAGCATTTATCAACCCTTACGT
CACAAAAGGAATGGCTCCGAGCTTACATGGGACGATTGGTGTCAAAATGT
CGAATTGACAGACAATTTACTTTATTTGACCCTAATATAATAATCGAACT
TATCCCGCGTCATCTTTGGTGCAAGAATTGAGATAAGTGCACTTGTCCGC
GTAGATTGGTGCGAGGATTTCGTTAGACCTTTCTTATCATACCCTCAGGT
GCCTAACCGCCCCTGCcctctttttatttaaattccTCAAGCTCTTGACC
ATTATTAGGACCCCgtcgtttattaattttgaaaacattgcTTTTAGCTG
TCAAGAGAATTGCCCCTTGTTTTGCTTTAAACGGCCTGGTTTCCCAACAC
AATCCCCTAATCCCCTATCAAGGCACTTAAGAGTAAGGTAGAGATggaaa
aaaacatgaaactcGAAGTATAGAAGACAGAATTTACAACAAAAAAAACc
acgaagatgaaaaagaaaacctcAGTGACGTATTGacaaagaaagagaag
aagaaaaaaagaacgaTAAAATTTCCCTCTTTTTGATAAGCCAATTTCAT
TGGAGACACTGACTTTAATAAATCATCGACTTTTAGGAAAAAAACAGTGG
AGAGTTTTTTTGTACATTCATTCTACGTGATGATGGAAGTTTCTAAGTTC
TTGTGTAAGAAATCTTTTCCATCGAACATTGCAGTGATCTTAAACTTTCT
ATGtaaatttttatattgattatCTATATTacaattcaaaccaaatgtct
GTTTTTAGGGGTTGAATTTTTAAGCCCCTCTCACCCCGATGTCAATTATG
TTTGTCTGCTTTAGAGAATGCATCTAACGTTTCTCGATATTCATACCTAG
AATCACAAAATTTATATTTGCTGGAATAGTGACAACACTACCTGAAAACT
AGAACTATTCTTCGTGATTTGTTTATGAGAATATCTCTCTACTGGTGAAA
CGACAAGCACAAAATTATACATTTTGGTGtattaggttccaaataaacaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaaatgg
ctgaTCGTTTGACGCAACTTCAAGATCAAGTGAATAAATTGGCTGAGTGT
TTTTGTGATAGCATTGGTGTAATACAGCAAACTGCTCATCCGAATAacca
acaacagcaacaacaacctccacaacaacaaacaaatgaaaacaaCAAGC
CAATAGATCCAAACAATCCTCCTGATCCACAACAACCTTCACAACCTGAA
GAAAATTATTCCCAATTTTTCGCATCCATGATTGCACGCACTGTCAAAGA
TATTGATCATTTAATAGATGCTTTACCAAGTGAGAAATCAACCACGGAAC
TTCAAATGAAAAGCCTTAAAcagcttgaaaatgaaaatgaggtTGCTTAT
GAAGAACTGCAGAAAGCTGTTGCTGAAGGAGAATCTCTTTTGGAAGAGAT
CAGGTCAGCCTCATCGCAAATTGCTAATAATTTACTTAGCTCCAGGACTA
GTGGTAAAATCAGTGACTCTTAAATTACATGACTACGATCTCACAGGAgc
aattttcagttttattggCCTCATCAACCCTTATGCCACAAAAAGCTTGG
GTTCAAGTTTACATAGGTTGAATGGCGTCGTAATGCAATCGGCCAATGGA
TTTCATTCAACCCAGATAAGCTCTAAGCCCGCTCTAACCTGCTGTTTTTT
TGGAACAAGGATTGATAGGTATCTTGGCTCTTGTTGATAAGCATTTATCA
ACCCTTACGTCACAAAAGGAATGGCTCCGAGCTTACATGGGACGATTGGT
GTCAAAATGTCGAATTGACGGTGCAATGACAGACAATTTACTTTATTTGA
CCCTAATATAATAATCGAACTTAACCCGCGTCATCTTTGGTGCAAGAATT
AAGATAAGTGTACTTGTACCATCATTAGAACCCCgtcgtttattaatttt
gaaaacatttttagcTGCCAAGAGAATTCCCCCTTGTTTTGTTCTAAATG
GCctattttttccaacacaatCCCCTAATCCCCTATCAAGGCACTTGAGG
GTGAGGTAGAGatggaaaaaaaacatgaaactcGAAGTATAGAACAGAAG
ACAGAAtttacaacaaaaaaaaaccgcgaagatgaaaaagaaaacctcAG
TGACGTATTGACAAAGAAAgagatgaagaaaaaagaacgagAAAATTTCC
CTCTTTTTGATAAGCCAATTTCATTGGAGACACTGGCTTTAATAAATCAT
CGACTTTTGGGGAAAAAAAACAGTGGAGAGTTTTTTTGTACATTCATTCT
ACGTGATGATGGAAGTTTTTAAGTTCTTGTGTAAGAAATCTTTTCCATCG
AAGAACATTGCAGTGATCTTAAACTTTCTATGtaaatttttatattgatt
atCTAAATTacaattcaaaccaaatgtctGTTTTTAGGGGTTGAATTTTT
AAGCCCCTCTCACCCCGATGTCAATTATGCTTGTGTGCTTTAGAGAATGC
ATCTAACGTTTCTCAATATTCATACCTAGAATCACAAAATTTATATTTGC
TGGAATAGTGACAACACTACCTGAAAACTAGAACTATTCTT Coding sequence (CDS) from alignment at scaffold_121:10530..13920+ >TCONS_00047100 ID=TCONS_00047100|Name=TCONS_00047100|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_121:10530..13920+ (Clytia hemisphaerica)
atggctgaTCGTTTGACGCAACTTCAAGATCAAGTGAATAAATTGGCTGA
GTGTTTTTGTGATAGCATTGGTGTAATACAGCAAACTGCTCATCCGAATA
ACCAGCAACAGCAGCAACAACCTCCACAACaacaaacaaatgaaaacaaC
AAGCCAATAGACCCAAACAATCCTCCTGATCCACAACAACCTGAAGAAAA
TTATTCCCAATTTTTCGCATCCATGATTGCACGCACTGTCAAAGATATTG
ATCATTTAATAGATGCTTTACCAAGTGAGAAATCAACCACGGAACTTCAA
ATGAAAAGCCTTAAAcagcttgaaaatgaaaatgaggtTGCTTATGAAGA
ACTGCAGAAAGCTGTTGCTGAAGGAGAATCTCTTTTGGAAGAGATCAGGT
CAGCCTCATCACAAATTGCTAATAATTTACTTAGCTCCAGGACTAGTGGT
AAAATCAGTGACTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047100-exon-scaffold_121-1491911889:10530..11684 | TCONS_00047100-exon-scaffold_121-1491911889:10530..11684 | Clytia hemisphaerica | exon |
| TCONS_00047100-exon-scaffold_121-1510915933:10530..11684 | TCONS_00047100-exon-scaffold_121-1510915933:10530..11684 | Clytia hemisphaerica | exon |
| TCONS_00047100-exon-scaffold_121-1575043694:10530..11684 | TCONS_00047100-exon-scaffold_121-1575043694:10530..11684 | Clytia hemisphaerica | exon |
| TCONS_00047100-exon-scaffold_121-1491911889:13404..13920 | TCONS_00047100-exon-scaffold_121-1491911889:13404..13920 | Clytia hemisphaerica | exon |
| TCONS_00047100-exon-scaffold_121-1510915933:13404..13920 | TCONS_00047100-exon-scaffold_121-1510915933:13404..13920 | Clytia hemisphaerica | exon |
| TCONS_00047100-exon-scaffold_121-1575043694:13404..13920 | TCONS_00047100-exon-scaffold_121-1575043694:13404..13920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_121 | supercontig | scaffold_121:10530..13920 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021384 | Mediator_Med21 |
Blast
BLAST of TCONS_00047100 vs. Swiss-Prot (Human)
Match: MED21 (Mediator of RNA polymerase II transcription subunit 21 OS=Homo sapiens GN=MED21 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 4.209e-24 Identity = 71/155 (45.81%), Postives = 90/155 (58.06%), Query Frame = 2
Query: 32 MADRLTQLQDQVNKLAECFCDSIGVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSQFFASMIARTVKDIDHLIDALPSEKSTTELQMKSLKQLENENEVAYEELQKAVAEGESLLEEIRSASSQIANNLLSSRTSGKISDS 496
MADRLTQLQD VN LA+ FC++IGV+QQ P + Q + N Y+Q FA++IART KDID LID+LPSE+ST LQ SL +LE EN A L+ V G+ LLE+I+SA + IA + L +R SG S S
Sbjct: 1 MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEE--------------YAQLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTR-SGTHSQS 140
The following BLAST results are available for this feature:
|
