TCONS_00048134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048134
Unique NameTCONS_00048134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048134 ID=TCONS_00048134|Name=TCONS_00048134|organism=Clytia hemisphaerica|type=transcript|length=537bp
ctcaaaatatgataaaattcactttttttgtcattaaGGATTAGGAGACA
CAAAAATTCTGGATCTTTGATTTCTTTCCTGACTTGAAATCTCATTTTAT
TATATTAAGAATTTCTTAGGGGAAAGTTTAGGGTGAGTGTCTGGAATGAA
TaactttataaaaaagttttcaagctGGTTTTTTATTTCTGTCCGAAAGT
CTGACTGATTCTCCTGttcaaaatataataattttcacttttgttgTCAT
TTAAGAGATAGGAGAcccaaaatttataattctctgttttcttctctaat
ttgaaatatttatatcacagaattatatcaaaaattttaaagatcaAGTT
CTAGTAAACAATGACATTATATAGTACAAATTCCTTAGCTGGCTTTTTAa
tcttctttttgctttgtttaCTTCTGTTTGAAAGTCTGGTCAGCtctcct
tctcaaaatatgaaaagaTTCATTTTTCATGTCATCGAGGATTAGGAGAC
ACAAAAGTTCTGGCTATCTGGGGctatttgttttctt
Run BLAST on NCBI

transcript from alignment at scaffold_140:149314..149850

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048134 ID=TCONS_00048134|Name=TCONS_00048134|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at scaffold_140:149314..149850 (Clytia hemisphaerica)
aagaaaacaaatagCCCCAGATAGCCAGAACTTTTGTGTCTCCTAATCCT
CGATGACATGAAAAATGAAtcttttcatattttgagaaggagaGCTGACC
AGACTTTCAAACAGAAGtaaacaaagcaaaaagaagatTAAAAAGCCAGC
TAAGGAATTTGTACTATATAATGTCATTGTTTACTAGAACTtgatcttta
aaatttttgatataattctgtgatataaatatttcaaattagagaagaaa
acagagaattataaattttgggTCTCCTATCTCTTAAATGAcaacaaaag
tgaaaattattatattttgaaCAGGAGAATCAGTCAGACTTTCGGACAGA
AATAAAAAACCagcttgaaaacttttttataaagttATTCATTCCAGACA
CTCACCCTAAACTTTCCCCTAAGAAATTCTTAATATAATAAAATGAGATT
TCAAGTCAGGAAAGAAATCAAAGATCCAGAATTTTTGTGTCTCCTAATCC
ttaatgacaaaaaaagtgaattttatcatattttgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030639XLOC_030639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048134-exon-scaffold_140-1491911889:149314..149850TCONS_00048134-exon-scaffold_140-1491911889:149314..149850Clytia hemisphaericaexon
TCONS_00048134-exon-scaffold_140-1510915933:149314..149850TCONS_00048134-exon-scaffold_140-1510915933:149314..149850Clytia hemisphaericaexon
TCONS_00048134-exon-scaffold_140-1575043694:149314..149850TCONS_00048134-exon-scaffold_140-1575043694:149314..149850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:149314..149850 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.540819	0.843814	0.734812	0.718899	0.437595	0.230529	0	0.390564	0.182295	0.112901	0.328753	0.504256	0.143873	0	0.122838	0.395472	0	0.0832255	0.229961	0	0.104579	0	0.124019	0.451003	0.232261	0.207288	0.148314	0	0.960428	0.122315
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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