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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050705 ID=TCONS_00050705|Name=TCONS_00050705|organism=Clytia hemisphaerica|type=transcript|length=1152bp
CTTGACAGTCGAGACAGTTGGCACAATGGAGGACTGGACAGTCGAGACAG
TTGAAACAATGGAGGACTGGACAGTCGAGACAGTTGAAACAATGGAGGAC
TGGACAGTCNGGAGCTAGCTGACGATGACTTGACAGTCGAGACAGTCGGC
ACAATGGAGGACTGGACAGTCGAGACAGTTGAAACAATGGAGGACTGGAC
AGTCGAGACAGTTGAAACAATGGAGGACTGGACAGTCGAGACAGTTGATG
CGATGGAGGCTTGGACAGTCGAGACAGTTGGCGCAATGGAGGACTGTACA
GTCGAGACTGTTGACGCAATGGAGGACTGTACGGTCAAGACAGTTGACGC
GATGGAGGATTGGACAGTCGACGCGATAGAGGATTGGACAGTCGACGCAA
TGGAGAAATGGACTGTTGGTGACGAGATGATCGAACTTGCTGACGAGGAA
AGATGATTGACGGTCGATGACAAAGTGGCTGACGAGGAATGGACAGTAGC
AGTTTTCGATCTTGGCATACTTGAAACGATTGAAAATTGCGATCCATCAA
ATCCCAGAAGTTTACATAAATCTCTAAGGTCGAACGCAAATCGAGAGCAA
AATACTACCGGAGATGAAGCTGAATCCGCATGGCTGAAGAAATAAAAACT
ACATACCGCTTTCGCTTTAGTTGTTTCTTCTTCCTCTGGTTCTGTGTCCG
TATCTGATGAGACCACCTCTTTGTTTTGAGTTTTCTCCCACTCCAACTCG
AAATCATTGAGTTCCTCCTTGGTatctaaaatgtaaaaaatagaCCTATT
TTTAGTGGGAAAAATACTTTTTGAgcatgaaattttcaagtcagGGTCCT
ATAAGGAAACTATTAGCTTTGTcatagcccggggtccacttaatggtttt
tttatagactggatggcagtcctgccaaaagtagactctagtcttgCTTA
GTCACAAACGTTTTTAGgccattttgagcctcgttgttcttatactttag
gcgtacaaactttcgcgaggacgaaaaatcgcgaaattcacgacagtTAC
CTTcgcaaatttaatgaaaaaatatttttcgcgagcataaactttcgcga
atcaagacgtaaaattgagaattttcacatgaaaaaattgcTTAGATAGG
GA Run BLAST on NCBI transcript from alignment at scaffold_184:33961..37899- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050705 ID=TCONS_00050705|Name=TCONS_00050705|organism=Clytia hemisphaerica|type=transcript|length=3939bp|location=Sequence derived from alignment at scaffold_184:33961..37899- (Clytia hemisphaerica)
CTTGACAGTCGAGACAGTTGGCACAATGGAGGACTGGACAGTCGAGACAG
TTGAAACAATGGAGGACTGGACAGTCGAGACAGTTGAAACAATGGAGGAC
TGGACAGTCNGGAGCTAGCTGACGATGACTTGACAGTCGAGACAGTCGGC
ACAATGGAGGACTGGACAGTCGAGACAGTTGAAACAATGGAGGACTGGAC
AGTCGAGACAGTTGAAACAATGGAGGACTGGACAGTCGAGACAGTTGATG
CGATGGAGGCTTGGACAGTCGAGACAGTTGGCGCAATGGAGGACTGTACA
GTCGAGACTGTTGACGCAATGGAGGACTGTACGGTCAAGACAGTTGACGC
GATGGAGGATTGGACAGTCGACGCGATAGAGGATTGGACAGTCGACGCAA
TGGAGAAATGGACTGTTGGTGACGAGATGATCGAACTTGCTGACGAGGAA
AGATGATTGACGGTCGATGACAAAGTGGCTGACGAGGAATGGACAGTAGC
AGTTTTCGATCTTGGCATACTTGAAACGATTGAAAATTGCGGTGAGTCTT
TATTTTTTGTGGTGGTCACCATTGTCATCCGATCAAAAACAAAACCATTT
ACCTCTCNTCGATTTTCGTTTTGCCTTTTCAACCTAATATAGATAGAAGG
ATAATACATTAAATCAATAAGAATTATTTTTTAATTATGACTTTAGTACC
TTATTGGAACTAATTTTTGCAGGTTTTAATTTTAGCTTTTTCGGCAAAAA
AAATCTTGAAAAATCCCTAGGAAAATGAAAGAAATTTGTCCAAAAAAGGG
CAAAACCGCAAAAATTAAAACCTGCAAAAATTCCAGAATGTAAAAAACCG
CCAAAATTNGTTTTAATTTTAGCTTTTTCGTCAAAAAAAAACTTGAAAAA
TCCCTAGGAAAATGAAAGAAATTTGTCCAAAAAAGGGCAAAACCGCAAAA
ATTAAAACCTGCAAAAATTCCAGAATGTAAAAAACCGCCAAAATTAGAAC
TCGTGAAATGCAATTTTTCAGATATTTTTTTCGACCGCGAAAATTAGTTC
CAATAAGGTAGGTATACCTGATTTCATTTGATTTTCACTATTCCTGAATT
ATATTTTATATTCCTGAATGTTTGAAAATAAGCTCTAGAAACTTGTGTTG
CTTTTAAAGTCAATAATCGGCTACTTTAATCGTAGAAATTTTAGCGAGTT
TTCCCTGTTTTCACTAAAACATGCCGAATCGACAGATCGCTAAAATTTAT
ACGCGCTAAATTTTTCAAAATGCAATTATTTTAGGGGGAAATTTGTTCGT
TTTTTTGAGGTCGCTCGATTTTTTTAGTCAAAGCACTTGTTGTACATTTT
TGGAAAGCTAAGGGGTAGGGGAATCGAAATAACTTGGGTGCCAATTTTGC
TTCGGACACTTTGGTATGATTTTCGGACAAATACGACGGTCTCAGTCAAA
AATCATAGGGTGAAAAAATAATGAAAATTTCAGCTAGAGAAAACTGAGAC
CTGTTATATATTTTTGGAAAGCTCTCAAAAAATTAAGATTAGTGATATAT
TGCGAGTATAGGTGATTTCTTTACCTAACTCGAGATTTTAATCCTTAAAA
ACAGTGTTTTTCAGTGTTTTTCAGCCAGAAACAGCTTTTTTGTCCAGTTT
TAGCGCTTTTGGAAGCTCGATATCTCGAGTTAGGTACTGAAATCACCTAT
ACTCGCAATATATCAATAATCTTAATTTTTTGAGAGCTTTCCAAAAATAT
ACAACAGGTCTCCGTTTTCTCAAGTTAAAATTTTCACTAATTTTTCACCC
TATGATTTTTGCCCGAGACTGTCGTATTTCTCCGAAAATCACACCAAAGT
GTCCGAAACAAAATTGGCACCTAAGTTATTTTAATTCCCCTACCCCTTAG
CTTTCCAAAAATGTATAACAAGTGCTTTGACTAAAAAAATCGAGCGTTTT
TACAAATTTCCCCCTACTATTAGTTTAATTAAATCCAGTCCAAGTCTCCT
TTTTTAATGATTTTTTGCGAAAATTAATAAAGATATTTATTTTTGTCGGT
CCCTAGAGTTCTGTAAGAAAATGTAAAACACACGCTTATCTCTATATATA
TATATATTATCTCTCTCTTATACTTTCACCAAAATACATACATCTCAAAA
AGTTTTTTGGAAATGGCAATTTGCTAAAATTTATCCACGTGAAATTTTTT
GAAATTGTGATTCGCTAAAATTAGTCTTGCTAAAATTTCTATGATTAAAA
TAATCTATATATTAAAAAACCATACAGAGTTATTGACAAACTTTTTTTAC
AAAACCCCCTGGAAATTTTCAACATCAGCTTACCCCTTAGATATTGAGTT
TTCACCCCCTGGAAAATTCTTTTTTTGTTGATTTTCTGAAACAAGAGGTT
GGAAAAAACCTGTAAAGTTTTATTGACCTCTGGAAATCTTCATAAAGCCC
CTTAGAAATTTTTTGAAAATACAAAAAAAAAACCTTGGAAAAAAGGGTTG
AAAGACCCCTGAAAAGTTCCTCAATACCCCTGTAGGGACTAAAAATGGAA
TAACCCAATACTAGATAAGTACTGGTCAAAATTGAAAAAATGGTGGTTTG
TCAAAATTAATATCCATTGCCTTTACCCAAAATCGCCCCTCTTTTTAATC
AAATTGCCCAAAATCTGATACAAATAAGAAATTTTGCCAAAAAAGTATCT
TTATTTTGTGACAGCCTAGAAAAAATCAACTTAAGAAGTATGTTATCTCC
TTTTAGATCCATCAAATCCCAGAAGTTTACATAAATCTCTAAGGTAAGTT
TATAGATACCTTCTTTTCTTTTCCTGACTTCTTTTGTTCCTTTTTATTTG
CCTTTGTTTTGACAATCTTTGCCTTCTTTGGTGTTTTCGTCTTTGGTGTT
TTGGATTTCTGCAAAAAAGAAAAGAAAAGGGATAAATGTCTTTTCAAAAA
AATTTGTATCGTATGGATGGTAGTACAGAGAGGCAAAAAAGTTCTTATAA
AAAAATGTATTTCTTTTCCCGCCAAATCATCCCTTTCTGATACAGGGCTA
GAGTTCAATCTCTAACCTTTCTCAGGCAAGAAAAAGTGAAGCTTTAAAAA
ATGCGTCGCATTTTTGACGACAGATTGAATCTAACAATTCCTTTGTTTAC
GATTGATATTTTTTTCGAAATTTAGCGGTAGATTTTAGTTTCAATCTGTC
ATTTGTGTAAAAACCAGGCGAGCCGCTCAAGGCCGCCCAACTTTGGTAGG
ATTTGTTGTCTCAAATCCTACCAAGGAGATTGACTTCTAGCCCTCCGGAC
TTATACTTCATTGTTTCTGATACCATTGGTCATTACGAAGATAATATATT
CTATATTTTTTCCAGGTCGAACGCAAATCGAGAGCAAAATACTACCGGAG
ATGAAGCTGAATCCGCATGGCTGAAGAAATAAAAACTACATACCGCTTTC
GCTTTAGTTGTTTCTTCTTCCTCTGGTTCTGTGTCCGTATCTGATGAGAC
CACCTCTTTGTTTTGAGTTTTCTCCCACTCCAACTCGAAATCATTGAGTT
CCTCCTTGGTATCTAAAATGTAAAAAATAGACCTATTTTTAGTGGGAAAA
ATACTTTTTGAGCATGAAATTTTCAAGTCAGGGTCCTATAAGGAAACTAT
TAGCTTTGTCATAGCCCGGGGTCCACTTAATGGTTTTTTTATAGACTGGA
TGGCAGTCCTGCCAAAAGTAGACTCTAGTCTTGCTTAGTCACAAACGTTT
TTAGGCCATTTTGAGCCTCGTTGTTCTTATACTTTAGGCGTACAAACTTT
CGCGAGGACGAAAAATCGCGAAATTCACGACAGTTACCTTCGCAAATTTA
ATGAAAAAATATTTTTCGCGAGCATAAACTTTCGCGAATCAAGACGTAAA
ATTGAGAATTTTCACATGAAAAAATTGCTTAGATAGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050705-exon-scaffold_184-1575043694:37359..37899 | TCONS_00050705-exon-scaffold_184-1575043694:37359..37899 | Clytia hemisphaerica | exon |
| TCONS_00050705-exon-scaffold_184-1575043694:35107..35143 | TCONS_00050705-exon-scaffold_184-1575043694:35107..35143 | Clytia hemisphaerica | exon |
| TCONS_00050705-exon-scaffold_184-1575043694:33961..34534 | TCONS_00050705-exon-scaffold_184-1575043694:33961..34534 | Clytia hemisphaerica | exon |
| TCONS_00050705-exon-scaffold_184-1510915933:37359..37899 | TCONS_00050705-exon-scaffold_184-1510915933:37359..37899 | Clytia hemisphaerica | exon |
| TCONS_00050705-exon-scaffold_184-1510915933:35107..35143 | TCONS_00050705-exon-scaffold_184-1510915933:35107..35143 | Clytia hemisphaerica | exon |
| TCONS_00050705-exon-scaffold_184-1510915933:33961..34534 | TCONS_00050705-exon-scaffold_184-1510915933:33961..34534 | Clytia hemisphaerica | exon |
| TCONS_00050705-exon-scaffold_184-1491911889:37359..37899 | TCONS_00050705-exon-scaffold_184-1491911889:37359..37899 | Clytia hemisphaerica | exon |
| TCONS_00050705-exon-scaffold_184-1491911889:35107..35143 | TCONS_00050705-exon-scaffold_184-1491911889:35107..35143 | Clytia hemisphaerica | exon |
| TCONS_00050705-exon-scaffold_184-1491911889:33961..34534 | TCONS_00050705-exon-scaffold_184-1491911889:33961..34534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_184 | supercontig | scaffold_184:33961..37899 - |
Blast
The following BLAST results are available for this feature:
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