TCONS_00050980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050980
Unique NameTCONS_00050980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050980 ID=TCONS_00050980|Name=TCONS_00050980|organism=Clytia hemisphaerica|type=transcript|length=511bp
ATCTCAGCATCCAGGACATCAATGAAACAATTTAAAGAAATACCCTAGAC
ATTTATCCATGTTGAGATTTCAATACACCCCACACCATAAAAAACTCTTA
CATACCATCAATTAGCTGCAACAAACAACTTGATGAATTATCATGGGTAC
TTTtcagaaagtaaattttttattcaattgagcataacttttgatctatg
gactgaatttaataaataacccatcaaaatttaagtttatctttcttctt
tccaatggcataggaatggttcttttagaattttcagattttgagaaaat
cagttttaaagagagaaacttttttgtggcgcactcGGTATTTAACTTCT
CCGcacatttgtttatctattgcttcaTCTCCTCGCTACTTCGCAACTTT
CTTTATTTGTTTATACTTTGCTTTGTCTACTAGCTACTTTGCAACAAACG
AAAAATTCATGATAAAACCTATGAAATCCATGGTCAACAGCTCAAAACTG
TTAACAAAGCT
Run BLAST on NCBI

transcript from alignment at scaffold_19:793287..793797

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050980 ID=TCONS_00050980|Name=TCONS_00050980|organism=Clytia hemisphaerica|type=transcript|length=511bp|location=Sequence derived from alignment at scaffold_19:793287..793797 (Clytia hemisphaerica)
AGCTTTGTTAACAGTTTTGAGCTGTTGACCATGGATTTCATAGGTTTTAT
CATGAATTTTTCGTTTGTTGCAAAGTAGCTAGTAGACAAAGCAAAGTATA
AACAAATAAAGAAAGTTGCGAAGTAGCGAGGAGAtgaagcaatagataaa
caaatgtgCGGAGAAGTTAAATACCgagtgcgccacaaaaaagtttctct
ctttaaaactgattttctcaaaatctgaaaattctaaaagaaccattcct
atgccattggaaagaagaaagataaacttaaattttgatgggttatttat
taaattcagtccatagatcaaaagttatgctcaattgaataaaaaattta
ctttctgaAAAGTACCCATGATAATTCATCAAGTTGTTTGTTGCAGCTAA
TTGATGGTATGTAAGAGTTTTTTATGGTGTGGGGTGTATTGAAATCTCAA
CATGGATAAATGTCTAGGGTATTTCTTTAAATTGTTTCATTGATGTCCTG
GATGCTGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032321XLOC_032321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050980-exon-scaffold_19-1491911889:793287..793797TCONS_00050980-exon-scaffold_19-1491911889:793287..793797Clytia hemisphaericaexon
TCONS_00050980-exon-scaffold_19-1510915933:793287..793797TCONS_00050980-exon-scaffold_19-1510915933:793287..793797Clytia hemisphaericaexon
TCONS_00050980-exon-scaffold_19-1575043694:793287..793797TCONS_00050980-exon-scaffold_19-1575043694:793287..793797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:793287..793797 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.603962	0.34429	1.33867	2.35152	0.319089	0.513275	0	0.424188	0.597729	0.377617	0.122767	0.157926	0.47078	0.163731	0.133929	0.216716	0	0.183645	0	0.26317	1.29416	0.666919	0.136736	0.372519	0.506241	0.112567	0.166406	1.06968	0.657724	0.400657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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