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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051120 ID=TCONS_00051120|Name=TCONS_00051120|organism=Clytia hemisphaerica|type=transcript|length=329bp
CATTGTATCTTAAACATTAAGGATTGGCTCAATGTTATGAACTTTGCAAA
CAACTTCGCAACGAGTGCGATAAAAGACAAGTTACAAACGCGAAAGTTGG
TCTACAACATAACTTAGGCTTGGGTGGCGCATGCGTTGTAGGATTGTACA
AGAAATATAAACCGCTGCAATTACAACAGACTTCAATGACAGATTCTTCA
CATTGCATTGAAAACTCTTTCCAATCAGATGTCGTCTTCAAAGAAATTGA
GCGCCGTTTAAAGGAGGAGAAAGCTACTCTCATCAAGAAATTCAAAGCAA
TTTTCTCATTTGAACTTGCCGGAGCTGAC Run BLAST on NCBI transcript from alignment at scaffold_197:51987..55179- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051120 ID=TCONS_00051120|Name=TCONS_00051120|organism=Clytia hemisphaerica|type=transcript|length=3193bp|location=Sequence derived from alignment at scaffold_197:51987..55179- (Clytia hemisphaerica)
CATTGTATCTTAAACATTAAGGTTTTACTTTGTTCAAATCCTTTGAATAG
AGCGGCAATGAAACCAAATGGAGGGGTATTACAATAGAAATCTCTTAGGA
ATTCTGCGAGGGAATTCTATTGTAATACCCCCGGAACAATCCCACAATGC
ATTGCTGTTTTAGAAAAATCAAAAACTCCGATAAGATCTAATTATTAGGC
CGCGCGCATCCCCAGAATACACAGGCTGAAAAATTTTACTCGAGATTTTT
ATGTGCTTGTTGCATGAAGGGATGCGTGCAGCCTATCCAATGGATAGTCG
GGTTGCCGTGGACCACTGCAAAACTGGGATATTGGGCATTCTAAACATTT
ACGATGAACAGGCAAAGATCTTTATGAACTTTTTTTTATAAAAACAAATA
TATAAGAACATAAGGCCTCTATGGCCAAAATATTTTTTGAATAAGTTAAA
GACATTTTAAGGCTTTATGCACTCTAAAACGCCTGACTTTTTAGGAAATT
GCTCAAAGATGATCACAAAATAGTGAAAATAAGAACACTAGTTGTACTTC
AATGACACTAAATTGATCATTAGAGGAAAAAATTCTGTATCAACTCATTA
GAGATCTTTCATCTTATCTTAGGATTGGCTCAATGTTATGAACTTTGCAA
ACAACTTCGCAACGAGTGCGATAAAAGACAAGTTACAAACGCGAAAGTTG
GTCTACAACATAACTTAGGCTTGGGTGGCGCATGCGTTGTAGGATTGTAC
AAGAAATATAAACCGCTGCAATTACAACAGTAAGTTAATTTGATTATAAT
GTGTTTGTAATGTGCCTTTTGTTACCAGCTTTCCTTGAGATTGGCCCATT
AGTTTTTTTATACAAATTTTGGCCAAAAAGTGCCGTGATTTATATCACGT
ACGCTTTGTTTTCGAAGTAATTTCATAAGTAGTATACTATAAGTATATTT
TTCTGGTGGCTGTCAGTGGAGCCGGGAGTGAGAGAGTCTATCCCCTTTTC
TATTTACGCCAGATGAGTTCGACTGCTGAGATGGAGCGCCACATCAACTC
CCAACTCCCAATTATTTACCGCCCAGTTCAGAATGTCCAATCTAAGCTAG
TCAATCGCTGAGTTGGCGCTGACTGCGGATCAAACCCACATCCCTTGAAT
TACAAAGCGGGTGCTCTACTGACTGAGCTACCCGGCCATCTAATTACGTA
ATTTTATGCGACAACTTATTCTCAATGAGATTTCCTTGGTGAATTCCTTG
GAGGTAAGAAGGGGTAGAATGTGAATTGGTATCTTACGGACCAATTTACT
TATTCTTGATATGCGTAATTCAAGATGACGTCATATTTTTTAACGGAAGC
ACTCGAAAAAAGCCGGACTTTGACTCCGTGTTTCTATTTTTAGTAACAGA
GAGGGGTCAAATCCCGGATTTTTTCGGGTGTTTCCGTTAGAAAAATGACT
TACGCATATCAAGAAATGACCATGACCTTAATCTAAGGGACAAGCTGGAG
TTTTTACAAGCTCTTATTTGATTTGGTTGGTCGTTAAGATGTAATAAAAG
AATCTCATTACTTTTTCTAAAGAACGCGTCATCTCTATCACTTTAAATGA
CCAATTAGTGAAGTATCTTGTAAAAACTCCAGCTCATCCTTAATCTAAGT
CTGGATATAGTCATAAATCAAAAAGATGTTTATATTCTAATTATCTTTTT
GTTTGGCCACCACCACTGACATCTTTTTTAACATTTATTCAGGACTTCAA
TGACAGATTCTTCACATTGCATTGAAAACTCTTTCCAATCAGATGTCGTC
TTCAAAGAAATTGAGCGCCGTTTAAAGGAGGTATAAACGCGTTTCTTTAT
ATGAACAAACTTTATAGAACAAAAGGCTTCGATAGCCAAAATGATAAAGA
ACAAGTTAAGAACATAAGGCTCATAAGGCTTTGGGACTCGAAAACACCCA
ATAACACAACGCACCGAGTCTAAAAATAGTAACAAATCTGGACAAATTCA
TTCGTTTGTTCGACTTTCAATCCCATCCTCCTTTGCGTTAATTGCCCTTT
CACCTTAATTAATTACAATATCAAAAAAAAAGGTAATAATCTCTGTGAGA
TGGAGAGCGCTATTCCATAGCAAATTACACAAAAATGGTCTCAAAAAGGT
AAAAATAAAAACATTTTAAGAACATTTTTAGGCTTAAAGTATTTATTTTT
ACATAAGTGATTCCGTTTCATATCAAACACATATTTCATATCAGGACAGA
GTCTCCCTATTGTTATATTATGCTGATATACGCAAAAAATGTTTTTCTTT
TCCTCTTTTTGACCAATCTTGCTCCACGATCGTGCCAATCCAATGTGAAA
AAGCTTGTGAATTAAAATTGATGAGTAAGCAAACGATATCACTCTTATTT
AAAAACAAAACCTTTAAAACTCAAAAACTTTTAGAACATTCAATGGCTTC
AAAAATTTTGTATGTCCGTATAAGAATAAAATGTTTATGTTTTGAAGCTT
TGTTAACAGATATCTCTTCTTAGAAAGAGTTAATATTCAACGACTCGTTT
AATCGCTTATTTTTCTTTCTGGCTTGAAACTCAATGGGAGAGATAATATC
GCGTCACCGATAAGGTCCCAACACTTTTGTCATTAACTCCTTAAAGCCGG
GTGTCCACTGGAAAAAATAAGTTCATCGCGAATTTGTTTGTCGCAAAAAA
TAAATCCAGACAGATGTCTGGAATTAAAAACCTATTGTTTTATTTGCGAT
AGGGCGAAAAAAAATAAGCGATGAAAAATGAAAACGTTTTCATTCTACAT
CGTTTATTATTTTTTACTTCGTCGTAAAAAAGAACAATAGATTTTTAATT
CCAGACATATGTCTGGATTTATTTTTTGCGACAGGTATTTGCGACGAACT
TATTTTTTTTCAGTGGACACCCAGCTTAAGGGAAGAAATTTTGGCGGGAA
TTTAATTTGGCAAATGGCCGAAAAACTTTCATTTAGACAAATCCACCAAA
TTAAGTCTCTTTGTCTCTTAAATTAATTCTGTCTCATTTTCGTAGTTTTA
CACCCAACTCCGCTATCTATTATGTATCAAAGTAGGACTTTTTCAATAAC
GCGCTTGTTTGCTGTTCTGTATTTTATCAGGAGAAAGCTACTCTCATCAA
GAAATTCAAAGCAATTTTCTCATTTGAACTTGCCGGAGCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051120-exon-scaffold_197-1575043694:55159..55179 | TCONS_00051120-exon-scaffold_197-1575043694:55159..55179 | Clytia hemisphaerica | exon |
| TCONS_00051120-exon-scaffold_197-1575043694:54401..54557 | TCONS_00051120-exon-scaffold_197-1575043694:54401..54557 | Clytia hemisphaerica | exon |
| TCONS_00051120-exon-scaffold_197-1575043694:53350..53437 | TCONS_00051120-exon-scaffold_197-1575043694:53350..53437 | Clytia hemisphaerica | exon |
| TCONS_00051120-exon-scaffold_197-1575043694:51987..52049 | TCONS_00051120-exon-scaffold_197-1575043694:51987..52049 | Clytia hemisphaerica | exon |
| TCONS_00051120-exon-scaffold_197-1510915933:55159..55179 | TCONS_00051120-exon-scaffold_197-1510915933:55159..55179 | Clytia hemisphaerica | exon |
| TCONS_00051120-exon-scaffold_197-1510915933:54401..54557 | TCONS_00051120-exon-scaffold_197-1510915933:54401..54557 | Clytia hemisphaerica | exon |
| TCONS_00051120-exon-scaffold_197-1510915933:53350..53437 | TCONS_00051120-exon-scaffold_197-1510915933:53350..53437 | Clytia hemisphaerica | exon |
| TCONS_00051120-exon-scaffold_197-1510915933:51987..52049 | TCONS_00051120-exon-scaffold_197-1510915933:51987..52049 | Clytia hemisphaerica | exon |
| TCONS_00051120-exon-scaffold_197-1491911889:55159..55179 | TCONS_00051120-exon-scaffold_197-1491911889:55159..55179 | Clytia hemisphaerica | exon |
| TCONS_00051120-exon-scaffold_197-1491911889:54401..54557 | TCONS_00051120-exon-scaffold_197-1491911889:54401..54557 | Clytia hemisphaerica | exon |
| TCONS_00051120-exon-scaffold_197-1491911889:53350..53437 | TCONS_00051120-exon-scaffold_197-1491911889:53350..53437 | Clytia hemisphaerica | exon |
| TCONS_00051120-exon-scaffold_197-1491911889:51987..52049 | TCONS_00051120-exon-scaffold_197-1491911889:51987..52049 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_197 | supercontig | scaffold_197:51987..55179 - |
Blast
BLAST of TCONS_00051120 vs. Swiss-Prot (Human)
Match: NLTP (Non-specific lipid-transfer protein OS=Homo sapiens GN=SCP2 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 3.025e-17 Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 3
Query: 21 GLAQCYELCKQLRNECDKRQVTNAKVGLQHNLGLGGACVVGLYK--------KYKPLQLQQTSMTDSSHCIENSFQSDVVFKEIERRLKEEKATLIKKFKAIFSFEL 317
GLAQC ELC QLR E KRQV AKV LQHNLG+GGA VV LYK ++ Q++ + +S + F++++VFKEIE++L+EE +KK IF+F++
Sbjct: 361 GLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPTSSAS----DGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKV 463
The following BLAST results are available for this feature:
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