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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051219 ID=TCONS_00051219|Name=TCONS_00051219|organism=Clytia hemisphaerica|type=transcript|length=964bp
cttttttgtactCGACTCAGGttcgaggagggcctcaaagtagaggcttt
cggaagaagaaaagggggCAGAGTTGGGTAAAGTGAGTGAGTTTAAaaat
actctttcacagcaaaaagcgttcgtgcacatcaattttggttagtcttc
tCTTCTCCCTCTTAAGTAGTTTGAAAGGAAGACCTGAGAAGACAGAGgtc
gtaagaactgcaagagggagaagaaaaggggacagaggtgggtaaatTGA
GAGAGTTCAAATATattctttcacagcaaaaagcgttcgtgcacATcaat
tttggatgccttttcttctttcttgtactcgacTCAGTTTCGAGGAGGGC
CTCAAgtcaaagtagaggctttcggaagaagaaaagggaacagaggtggg
taaagtgagtgatttaaaaaatactctttcacatcaaaaagcgtTTTTGA
AATGCGATTTTGGATggcttttctttatttttgtactCAACTCAGTttcg
aggagggcctcaaagaagaggctttcagaaaaagaaaaggggacagatgT
ACTCTAAGGGTAGAGAATTTAAGTTAAGCAGATATAAATCATTTATGGTG
AAATGTCGGTGAGATTCCTTCACGGTTGAAAAAGTTTAGTTCAGTTACCG
CTTGGTCGAATGATTCGTCTTTATCTAGATTTCTTTTTTGCTCATTTCTA
CGGGAGGGAAGTTTTGAGGCTAAAACGCAAACGTCCATATTTTCTCGATG
AAATATGCGGTAGCTTGGTTATCAACTTATGGCAAATCGATCATAATAGT
TAGCATAACTTGTGCAGTCTGTGTTTCCATAATAAATCACGGGtttcact
taaaaaatatttccactTTGAAACTGTAATCGATTTCAAATTATAGAGAG
ATTTTtctctgattattttcaacgtTTTAAAGTCATGATTTGATTGGTTC
CAGCTTCATCGAAG Run BLAST on NCBI transcript from alignment at scaffold_20:192040..195605+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051219 ID=TCONS_00051219|Name=TCONS_00051219|organism=Clytia hemisphaerica|type=transcript|length=3566bp|location=Sequence derived from alignment at scaffold_20:192040..195605+ (Clytia hemisphaerica)
cttttttgtactCGACTCAGGttcgaggagggcctcaaagtagaggcttt
cggaagaagaaaagggggCAGAGTTGGGTAAAGTGAGTGAGTTTAAaaat
actctttcacagcaaaaagcgttcgtgcacatcaattttggttagtcttc
tCTTCTCCCTCTTAAGTAGTTTGAAAGGAAGACCTGAGAAGACAGAGgtc
gtaagaactgcaagagggagaagaaaaggggacagaggtgggtaaatTGA
GAGAGTTCAAATATattctttcacagcaaaaagcgttcgtgcacatcaat
tttggttagtcttttttTTTCCCTCTTACGTAGTTTGAAAGGAAGACCTG
AGAAGACAGAGGTCATAAGAACTGCAAGAGGGAGAAGAAAATGGGgcaga
ggtgggtaaagtgagtGAGTTTAAACattctttcacagcaaaaacgTTTT
TGAAATACGATTTTGGATGCCTTATCTTCTTTTTTGTACTCGACTCAGGt
tcgaggagggcctcaaagtagaggctttcggaagaagaaaagggggCAGA
GTTGGGTAAAGTGAGTGAGTTTAAaaatactctttcacagcaaaaagcgt
tcgtgcacatcaattttggttagtaTTTACTTTTCCCTCTTAAGTAGTTT
GGAAGGAAGACCTGGGAAGACAGAAGTCATAAGAACTGCAAGAGGGAGAA
GAAAACGGGTCAGAGGTGGATAAAGTGAGTGAGTTTAAAAATGCTCTTTC
ACAATAAACAGCGTTcgtgcacatcaattttggttagtcttttcttctcc
ctCTTAAGTAGTTTGAAAGGAACCTGTCCAGAGAAGACAGAGATcgtaag
aactgcaagaaggAGGAGAAAAGGGGgcagaggtgggtaaagtgaaagag
tttaaaaatactctttcacagcaaaaagtgttcgtgcacatcaattttgg
ttagtcttctCTTCTTCCTATTGAGTAGTTTGAAAGGAAGACCTGAGAAG
ACAGAGGTCGTAAGAACTGCGAGAAGGAGGAGAAAAGGGGGCAGAGGTGG
ATAAAGTGAAAGAGTTTAAaaatactctttcacagcaaaaagcgttcgtg
aacatcaattttggttagtcttttcttctccctCTTAAGCAGTTTGAAAG
GAAGACCTGAGAAGACAGAGGTCTTAAGAACTGCGAGAAGGAGGAGAAAA
GGGGGCCGAGGTGGATAAAGTGAAAGAGTTTAAAAATACTCTTTCACAGC
AAAAAGCGTTCGTGCACATCAATTTTGGTTAGTCTTTTCTTTTCCCTCTT
AAGTAGTTTGAAAGGAAGACCTGAGAAGACAGAGGTCGTAAGAACTACAA
GAAGGAGGAGAAAAGAGGACAGAGGTGGGTAAAGTGAGTGAGTTTAAAAA
TACTCTTTCACAGCAAAAAGCGTTCGTGCACATCAATTTTGGTTAGTCTT
TACTTTTCCCTCATAAGTAGTTTGGAAGGAAGACCTGGGAAGACAGAGGT
CATAAGAACTGCAAGAGGGAGAAGAAAATGGGgcagaggtgggtaaagtg
agtGAGTTTAAAAatgctctttcacagcaaaaagcgttcgtgcacatcaa
ttttggttagtcttttcttttCCCTCTTAAGTAGTTTGAAAGGAAGACCT
GAGAAGACAGAGGTCGTAAGAACTACAAGAAGGAGGAGAAAAGaggacag
aggtgggtaaagtgagtGAGTTTAAaaatactctttcacagcaaaaagcg
ttcgtgcacatcaattttggttagtctttacTTTTCCCTCATAAGTAGTT
TGGAAGGAAGACCTGGGAAGACAGAGGTCATAAGAACTGCAAGAGGGAGA
AGAAAATGGGgcagaggtgggtaaagtgagtGAGTTTAAAAatgctcttt
cacagcaaaaagcgttcgtgcacatcaattttggttagtcttttcttttC
CCTCTTAAGTAGTTTGAAAGGAAGACCTGAGAAGACAGAGgtcgtaagaa
ctgcaagaaggAGGAGAAAAGGGGgcagaggtgggtaaagtgagaGAGTT
TAAAAATactctttcacatcaaaaagcgttcgtgcacatcaattttggAT
AGTCTTTTCTTTTCCCTCTTAAGTAGTTTGAAAGGAAGACCTGAGAAGAC
AGAGgtcgtaagaactgcaagaaggAGGAGAAAAGGGGgcagaggtgggt
aaagtgagtGAGTTTAAACATaatctttcacagcaaaaagcgttcgtgca
catcaattttggttagtcttttcttctccctCTTAAGCAGTTTGAAAGGA
AGAGCTGAGAAGACAAAAgtcgtaagaactgcaagaaggAGGAGAAAAGG
GGgcagaggtgggtaaagtgagagagttcaaacatactctttTACAGCAA
AAACGTTTTTGAAATGCGATTTTGAatgccttttcttctttcttctactC
GACTCGGTTacgaggagggcctcaaagtagaggttttcagaagaaaaaag
ggGATAGAGGTGGATAAAGTGAGTGAGTTTAAAAatgctctttcacagca
aacaGCGTTCGTGaacatcaattttggttagtcttttcttctccctCTTA
AGTAGTTTGAAAGGAACCTGTCCAGAGAAGACAGAGGTCATAAGAACTGC
AAGAAGGAGGAGAAAAGGGGGCAGATGTGGATAAAGTGAGAGAATTTaaa
catactctttcacagcaaaaagcgttcgttcatatcaattttagttagtc
ttttcttctccctCTTAAGTAGTTTGAAAGGAAGACCTGAGAAGACAGAG
gtcgtaagaactgcaagaaggAGGAGAAAAGGGGTCAGAGGGTGGGTAAA
GTGAGTGAGTTTAAAAATTCAAAGAGTTCAAAAAGCGTTCGTGTACATca
attttggatgccttttcttctttcttgtactcgacTCAGTTTCGAGGAGG
GCCTCAAgtcaaagtagaggctttcggaagaagaaaagggaacagaggtg
ggtaaagtgagtgatttaaaaaatactctttcacatcaaaaagcgtTTTT
GAAATGCGATTTTGGATggcttttctttatttttgtactCAACTCAGTtt
cgaggagggcctcaaagaagaggctttcagaaaaagaaaaggggacagat
gTACTCTAAGGGTAGAGAATTTAAGTTAAGCAGATATAAATCATTTATGG
TGAAATGTCGGTGAGATTCCTTCACGGTTGAAAAAGTTTAGTTCAGTTAC
CGCTTGGTCGAATGATTCGTCTTTATCTAGATTTCTTTTTTGCTCATTTC
TACGGGAGGGAAGTTTTGAGGCTAAAACGCAAACGTCCATATTTTCTCGA
TGAAATATGCGGTAGCTTGGTTATCAACTTATGGCAAATCGATCATAATA
GTTAGCATAACTTGTGCAGTCTGTGTTTCCATAATAAATCACGGGtttca
cttaaaaaatatttccactTTGAAACTGTAATCGATTTCAAATTATAGAG
AGATTTTtctctgattattttcaacgtTTTAAAGTCATGATTTGATTGGT
TCCAGCTTCATCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051219-exon-scaffold_20-1491911889:192040..192333 | TCONS_00051219-exon-scaffold_20-1491911889:192040..192333 | Clytia hemisphaerica | exon |
| TCONS_00051219-exon-scaffold_20-1510915933:192040..192333 | TCONS_00051219-exon-scaffold_20-1510915933:192040..192333 | Clytia hemisphaerica | exon |
| TCONS_00051219-exon-scaffold_20-1575043694:192040..192333 | TCONS_00051219-exon-scaffold_20-1575043694:192040..192333 | Clytia hemisphaerica | exon |
| TCONS_00051219-exon-scaffold_20-1491911889:194936..195605 | TCONS_00051219-exon-scaffold_20-1491911889:194936..195605 | Clytia hemisphaerica | exon |
| TCONS_00051219-exon-scaffold_20-1510915933:194936..195605 | TCONS_00051219-exon-scaffold_20-1510915933:194936..195605 | Clytia hemisphaerica | exon |
| TCONS_00051219-exon-scaffold_20-1575043694:194936..195605 | TCONS_00051219-exon-scaffold_20-1575043694:194936..195605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:192040..195605 + |
Blast
The following BLAST results are available for this feature:
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