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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051651 ID=TCONS_00051651|Name=TCONS_00051651|organism=Clytia hemisphaerica|type=transcript|length=1012bp
GCAGTCGAAGATagagcgaaaattagtttctccGCGATCTCACACTCAAA
TAGTGGGGCGTCAGGGCGTGATCGTGAATGGGCGGACGGGCGTCCGAGAG
ACATGGTTTCGAGTACGCATGCTCAGATGAGACATGTATGGGTTTAAAAA
TGGTAgcccattttcaaaacaacatctCGGGTCGAGGGCTCTGGACAGCT
CACAGTTGACAATCAGCAGAGACGTACTTCACAAACAAAACACCATGCCA
GAAGGAGACGCCCCTCAAGAGGGAAATCAACAAATTACGAAAAATGATCT
TCAAAACATGCTTGCAAACCTACTCGAAAAAGCAAACGAGAATACCAAAA
GAATGCTGGACGATAGAATCCCAGAAGAAAAATCAGAGAAGCGCAGAAAG
CTTGAGAAAGTAAAACTGACCTCAAAAGCAAATCAGCAACAGTTCGACTA
TCAAGGACAAGTTGTGGACATATTTGAGAAAGCCGAAAACTCCCTCCAAA
AGCAAAAATATGACGAAGTGTCAGACCTATTGACCAAAGGTAAGGACATT
TGTTTTGCCAGAATGAAAGTCTTAATGATCGCTGATAGAGACGGGTGGGG
CATAGCCAATGCCTACCAAAGTGATGATCTCGCCTCGGATGAGGATGACG
AAAAGCGAATTCAAAAAGCTTTAAGGGAGGCAGCCCGGAAAAGAAGGCTA
AAGGAGAGCAATTCGGCACACAACTCGAATATAGCCAGTCCAATTTCAGT
AGTCACCATATGGATAGTAGACCaagacaaaaaccaaaaatccCCATTGA
GGAATTAGAATGTTGGAGGTGTGGAAAGAAAGGACATTTTTTTGCCACAT
GCACAAACCCACCTAAACCAACAGAGACATTAGTCGGTAATCCTACTGAA
AATACTTctaattaacattttttttttttcaaaagacgcttgtgttttta
ttttcaaaaataatttttttttcacacctGACACAAGAGCTGTTGGCAGT
CAAATACTCANN Run BLAST on NCBI protein sequence of TCONS_00051651-protein >TCONS_00051651-protein ID=TCONS_00051651-protein|Name=TCONS_00051651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MYGFKNGSPFSKQHLGSRALDSSQLTISRDVLHKQNTMPEGDAPQEGNQQ
ITKNDLQNMLANLLEKANENTKRMLDDRIPEEKSEKRRKLEKVKLTSKAN
QQQFDYQGQVVDIFEKAENSLQKQKYDEVSDLLTKGKDICFARMKVLMIA
DRDGWGIANAYQSDDLASDEDDEKRIQKALREAARKRRLKESNSAHNSNI
ASPISVVTIWIVDQDKNQKSPLRN Run BLAST on NCBI transcript from alignment at scaffold_202:928891..930158- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051651 ID=TCONS_00051651|Name=TCONS_00051651|organism=Clytia hemisphaerica|type=transcript|length=1268bp|location=Sequence derived from alignment at scaffold_202:928891..930158- (Clytia hemisphaerica)
GCAGTCGAAGATAGAGCGAAAATTAGTTTCTCCGCGATCTCACACTCAAA
TAGTGGGGCGTCAGGGCGTGATCGTGAATGGGCGGACGGGCGTCCGAGAG
ACATGGTTTCGAGTACGCATGCTCAGATGAGACATGTATGGGTTTAAAAA
TGGTAGCCCATTTTCAAAACAACATCTCGGGTCGAGGGCTCTGGACAGCT
CACAGTTGACAATCAGCAGAGACGTACTTCACAAACAAAACACCATGCCA
GAAGGAGACGCCCCTCAAGAGGGAAATCAACAAATTACGAAAAATGATCT
TCAAAACATGCTTGCAAACCTACTCGAAAAAGCAAACGAGAATACCAAAA
GAATGCTGGACGATAGAATCCCAGAAGAAAAATCAGAGAAGCGCAGAAAG
CTTGAGAAAGTAAAACTGACCTCAAAAGCAAATCAGCAACAGTTCGACTA
TCAAGGACAAGTTGTGGACATATTTGAGAAAGCCGAAAACTCCCTCCGAA
AGCAAAAATATGACNAAAGCGCAGAAAGCTTTAGAAAGTAAAACTGACGT
CAAAAGCAAATCAGCAACAGTTTGACTATCAAGGACAAGTTGTGGACATA
TTTGAGAAAGCCGAAAACTCCCTCCAAAAGCAAAAATATGACGAAGTGTC
AGACCTATTGACCAAAGGTAAGGACATTTGTTTTGCCAGAATGAAAGTCT
TAATGATCGCTGATAGAGACGGGTGGGGCATAGCCAATGCCTACCAAAGT
GATGATCTCGCCTCGGATGAGGATGACGAAAAGCGAATTCAAAAAGCTTT
AAGGGAGGCAGCCCGGAAAAGAAGGCTAAAGGAGAGCAATTCGGCACACA
ACTCGAATAGTAGCCAGTCCAATTTCAGTAGTCACAATAAGGATAGTAGA
CCAAGACAAAAACCAAAAATCCCCATTGAGGAATTAGAATGTTGGAGGTG
TGGAAAGAAAGGACATTTTTTTGCACAACTCGAATAGTAGCCAGTCCAAT
TTCAGTAGTCACCATATGGATAGTAGACCAAGACAAAAACCAAAAATCCC
CATTGAGGAATTAGAATGTTGGAGGTGTGGAAAGAAAGGACATTTTTTTG
CCACATGCACAAACCCACCTAAACCAACAGAGACATTAGTCGGTAATCCT
ACTGAAAATACTTCTAATTAACATTTTTTTTTTTTCAAAAGACGCTTGTG
TTTTTATTTTCAAAAATAATTTTTTTTTCACACCTGACACAAGAGCTGTT
GGCAGTCAAATACTCANN Coding sequence (CDS) from alignment at scaffold_202:928891..930158- >TCONS_00051651 ID=TCONS_00051651|Name=TCONS_00051651|organism=Clytia hemisphaerica|type=CDS|length=2025bp|location=Sequence derived from alignment at scaffold_202:928891..930158- (Clytia hemisphaerica)
TAGCCAGTCCAATTTCAGTAGTCACCATATGGATAGTAGACCAAGACAAA
AACCAAAAATCCCCATTGAGGAATTAGATATTTGAGAAAGCCGAAAACTC
CCTCCAAAAGCAAAAATATGACGAAGTGTCAGACCTATTGACCAAAGGTA
AGGACATTTGTTTTGCCAGAATGAAAGTCTTAATGATCGCTGATAGAGAC
GGGTGGGGCATAGCCAATGCCTACCAAAGTGATGATCTCGCCTCGGATGA
GGATGACGAAAAGCGAATTCAAAAAGCTTTAAGGGAGGCAGCCCGGAAAA
GAAGGCTAAAGGAGAGCAATTCGGCACACAACTCGAATAATGTATGGGTT
TAAAAATGGTAGCCCATTTTCAAAACAACATCTCGGGTCGAGGGCTCTGG
ACAGCTCACAGTTGACAATCAGCAGAGACGTACTTCACAAACAAAACACC
ATGCCAGAAGGAGACGCCCCTCAAGAGGGAAATCAACAAATTACGAAAAA
TGATCTTCAAAACATGCTTGCAAACCTACTCGAAAAAGCAAACGAGAATA
CCAAAAGAATGCTGGACGATAGAATCCCAGAAGAAAAATCAGAGAAGCGC
AGAAAGCTTGAGAAAGTAAAACTGACCTCAAAAGCAAATCAGCAACAGTT
CGACTATCAAGGACAAGTTGTGGACTAGCCAGTCCAATTTCAGTAGTCAC
CATATGGATAGTAGACCAAGACAAAAACCAAAAATCCCCATTGAGGAATT
AGATATTTGAGAAAGCCGAAAACTCCCTCCAAAAGCAAAAATATGACGAA
GTGTCAGACCTATTGACCAAAGGTAAGGACATTTGTTTTGCCAGAATGAA
AGTCTTAATGATCGCTGATAGAGACGGGTGGGGCATAGCCAATGCCTACC
AAAGTGATGATCTCGCCTCGGATGAGGATGACGAAAAGCGAATTCAAAAA
GCTTTAAGGGAGGCAGCCCGGAAAAGAAGGCTAAAGGAGAGCAATTCGGC
ACACAACTCGAATAATGTATGGGTTTAAAAATGGTAGCCCATTTTCAAAA
CAACATCTCGGGTCGAGGGCTCTGGACAGCTCACAGTTGACAATCAGCAG
AGACGTACTTCACAAACAAAACACCATGCCAGAAGGAGACGCCCCTCAAG
AGGGAAATCAACAAATTACGAAAAATGATCTTCAAAACATGCTTGCAAAC
CTACTCGAAAAAGCAAACGAGAATACCAAAAGAATGCTGGACGATAGAAT
CCCAGAAGAAAAATCAGAGAAGCGCAGAAAGCTTGAGAAAGTAAAACTGA
CCTCAAAAGCAAATCAGCAACAGTTCGACTATCAAGGACAAGTTGTGGAC
TAGCCAGTCCAATTTCAGTAGTCACCATATGGATAGTAGACCAAGACAAA
AACCAAAAATCCCCATTGAGGAATTAGATATTTGAGAAAGCCGAAAACTC
CCTCCAAAAGCAAAAATATGACGAAGTGTCAGACCTATTGACCAAAGGTA
AGGACATTTGTTTTGCCAGAATGAAAGTCTTAATGATCGCTGATAGAGAC
GGGTGGGGCATAGCCAATGCCTACCAAAGTGATGATCTCGCCTCGGATGA
GGATGACGAAAAGCGAATTCAAAAAGCTTTAAGGGAGGCAGCCCGGAAAA
GAAGGCTAAAGGAGAGCAATTCGGCACACAACTCGAATAATGTATGGGTT
TAAAAATGGTAGCCCATTTTCAAAACAACATCTCGGGTCGAGGGCTCTGG
ACAGCTCACAGTTGACAATCAGCAGAGACGTACTTCACAAACAAAACACC
ATGCCAGAAGGAGACGCCCCTCAAGAGGGAAATCAACAAATTACGAAAAA
TGATCTTCAAAACATGCTTGCAAACCTACTCGAAAAAGCAAACGAGAATA
CCAAAAGAATGCTGGACGATAGAATCCCAGAAGAAAAATCAGAGAAGCGC
AGAAAGCTTGAGAAAGTAAAACTGACCTCAAAAGCAAATCAGCAACAGTT
CGACTATCAAGGACAAGTTGTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051651-exon-scaffold_202-1575043694:929690..930158 | TCONS_00051651-exon-scaffold_202-1575043694:929690..930158 | Clytia hemisphaerica | exon |
| TCONS_00051651-exon-scaffold_202-1575043694:929300..929561 | TCONS_00051651-exon-scaffold_202-1575043694:929300..929561 | Clytia hemisphaerica | exon |
| TCONS_00051651-exon-scaffold_202-1575043694:928891..929171 | TCONS_00051651-exon-scaffold_202-1575043694:928891..929171 | Clytia hemisphaerica | exon |
| TCONS_00051651-exon-scaffold_202-1510915933:929690..930158 | TCONS_00051651-exon-scaffold_202-1510915933:929690..930158 | Clytia hemisphaerica | exon |
| TCONS_00051651-exon-scaffold_202-1510915933:929300..929561 | TCONS_00051651-exon-scaffold_202-1510915933:929300..929561 | Clytia hemisphaerica | exon |
| TCONS_00051651-exon-scaffold_202-1510915933:928891..929171 | TCONS_00051651-exon-scaffold_202-1510915933:928891..929171 | Clytia hemisphaerica | exon |
| TCONS_00051651-exon-scaffold_202-1491911889:929690..930158 | TCONS_00051651-exon-scaffold_202-1491911889:929690..930158 | Clytia hemisphaerica | exon |
| TCONS_00051651-exon-scaffold_202-1491911889:929300..929561 | TCONS_00051651-exon-scaffold_202-1491911889:929300..929561 | Clytia hemisphaerica | exon |
| TCONS_00051651-exon-scaffold_202-1491911889:928891..929171 | TCONS_00051651-exon-scaffold_202-1491911889:928891..929171 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:928891..930158 - |
Blast
The following BLAST results are available for this feature:
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