TCONS_00051757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051757
Unique NameTCONS_00051757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1062

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051757 ID=TCONS_00051757|Name=TCONS_00051757|organism=Clytia hemisphaerica|type=transcript|length=1062bp
ATTCAAGGctcaatttattttgttaattaGAAACTTaggaattttcattc
attttatttctTAGTTTGAACTTGAACCTCAATATCAATTCAATCAACGT
TACAAATTCTTGACTGTGTGTGTGCGTGGACTTACACAAATGTTCTAACA
AAAAGAGCTCAACAAAAGAAGACACGATAGCGCAAGGCAAAAAGACCAGA
TGTAGGGCTGAGAAACGAATCACGGATCCCGCCAAATCGGCAGATGCTAA
GAGTAAACGAAAGAAAGGAATTCTTTCCGAGATGTTCCAGTACGAACTAG
CATCCATGGCGGAAGGGTTTATGTCGAGTTCAAGCATGACGACAAACGAA
AAGAGAAAAACGTAACAGAACGGTACTCATCGTCAATGGAAATGATGCAT
GCGAAGAGAATGGAtcaattttaacattttcaaattcttttacaTCACCC
AGCCACTCTATTTGTCCATCTCTGTCCCTTGGTTCTTCCAGTTCTGTCGG
ATCTCCACCCTTGTCCCTTAGTTCTCCCAGTTCCACAGATCTCCATCCCT
GTCATTTGAAACCCATACCATCTTGCTTAGTTCCCCCTGTACCACAACCT
CTCAGACTGGCAACGTTGAGAGGAAAATTGTGTCAATAGTGACTAGTGCT
CCCAATAACATTATCGTCCAAAAAGCACTTGAAACAAAACTGCCACCCAT
ACAAAGTAGTGCTGGAAAAACCATGGTCACGAACAAAGCTATTGAAACCA
AACTAGCATCCATACAAAGTAGTGGTGCTAAAAATATTGTGATTCAGAAA
GCTGCCAAAGACGTTATCATCCAAAAAGCACTCACCAAAGCAAACATTCG
GAGTGAAAGTTGAACAAAGGGAAAAAATAGACTTGGTTGCCACAATCTTA
TCCTTTATTTTTGGTTACACAAATGAACACTTTTGTTACATTGTCTTTTA
AAtttggttgaaagtttttttttatatattgccAATTGAAACTTtatagt
tttatttttgattcctTTGCTTATGTCTAAAATTTGATGATAACTTAGAa
tataaaatcaag
Run BLAST on NCBI

transcript from alignment at scaffold_204:105403..106649-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051757 ID=TCONS_00051757|Name=TCONS_00051757|organism=Clytia hemisphaerica|type=transcript|length=1247bp|location=Sequence derived from alignment at scaffold_204:105403..106649- (Clytia hemisphaerica)
ATTCAAGGCTCAATTTATTTTGTTAATTAGAAACTTAGGAATTTTCATTC
ATTTTATTTCTTAGTTTGAACTTGAACCTCAATATCAATTCAATCAACGT
TACAAATTCTTGACTGTGTGTGTGCGTGGACTTACACAAATGTTCTAACA
AAAAGAGCTCAACAAAAGAAGACACGATAGCGCAAGGCAAAAAGACCAGA
TGTAGGGCTGAGAAACGAATCACGGATCCCGCCAAATCGGCAGATGCTAA
GAGTAAACGAAAGAAAGGTATAGTTTCTTTCAATCTTCGATTATGTGGTC
TATAGTCTGAAAATATTTAAATTATTGAAAAAATGATATTCAAAAGATAG
CAAAGAGAAAAAAATGACCATGTCGGTTACTTATTCACATTATACAGAGC
TGGGACAGAATCGAGTATCTTAAGATCTATAAATAATTTACTTTGTTTTC
AGGAATTCTTTCCGAGATGTTCCAGTACGAACTAGCATCCATGGCGGAAG
GGTTTATGTCGAGTTCAAGCATGACGACAAACGAAAAGAGAAAAACGTAA
CAGAACGGTACTCATCGTCAATGGAAATGATGCATGCGAAGAGAATGGAT
CAATTTTAACATTTTCAAATTCTTTTACATCACCCAGCCACTCTATTTGT
CCATCTCTGTCCCTTGGTTCTTCCAGTTCTGTCGGATCTCCACCCTTGTC
CCTTAGTTCTCCCAGTTCCACAGATCTCCATCCCTGTCATTTGAAACCCA
TACCATCTTGCTTAGTTCCCCCTGTACCACAACCTCTCAGACTGGCAACG
TTGAGAGGAAAATTGTGTCAATAGTGACTAGTGCTCCCAATAACATTATC
GTCCAAAAAGCACTTGAAACAAAACTGCCACCCATACAAAGTAGTGCTGG
AAAAACCATGGTCACGAACAAAGCTATTGAAACCAAACTAGCATCCATAC
AAAGTAGTGGTGCTAAAAATATTGTGATTCAGAAAGCTGCCAAAGACGTT
ATCATCCAAAAAGCACTCACCAAAGCAAACATTCGGAGTGAAAGTTGAAC
AAAGGGAAAAAATAGACTTGGTTGCCACAATCTTATCCTTTATTTTTGGT
TACACAAATGAACACTTTTGTTACATTGTCTTTTAAATTTGGTTGAAAGT
TTTTTTTTATATATTGCCAATTGAAACTTTATAGTTTTATTTTTGATTCC
TTTGCTTATGTCTAAAATTTGATGATAACTTAGAATATAAAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032766XLOC_032766Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051757-exon-scaffold_204-1575043694:106383..106649TCONS_00051757-exon-scaffold_204-1575043694:106383..106649Clytia hemisphaericaexon
TCONS_00051757-exon-scaffold_204-1575043694:105403..106197TCONS_00051757-exon-scaffold_204-1575043694:105403..106197Clytia hemisphaericaexon
TCONS_00051757-exon-scaffold_204-1510915933:106383..106649TCONS_00051757-exon-scaffold_204-1510915933:106383..106649Clytia hemisphaericaexon
TCONS_00051757-exon-scaffold_204-1510915933:105403..106197TCONS_00051757-exon-scaffold_204-1510915933:105403..106197Clytia hemisphaericaexon
TCONS_00051757-exon-scaffold_204-1491911889:106383..106649TCONS_00051757-exon-scaffold_204-1491911889:106383..106649Clytia hemisphaericaexon
TCONS_00051757-exon-scaffold_204-1491911889:105403..106197TCONS_00051757-exon-scaffold_204-1491911889:105403..106197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:105403..106649 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0831835	0.324468	0	0.0921449	0.280444	0.0443221	0.320836	0.600726	1.2267	0.564373	1.09559	0.692496	1.2171	0.919251	1.53512	2.12897	1.62358	2.04815	2.07801	1.85063	1.2064	1.17688	0.8107	0.737044	0.357242	1.15576	1.14061	0.365187	0.276981	0.188134
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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