TCONS_00051958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051958
Unique NameTCONS_00051958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051958 ID=TCONS_00051958|Name=TCONS_00051958|organism=Clytia hemisphaerica|type=transcript|length=210bp
GAAACCCCatatgccaaattaaattcccgccaaaaattcttccttttttt
gTTCAGTATTCTTGAATAGAAAGAATCTAATCTTGACAAAATCAATTCCA
GCGGAAAATCTTACTATTTCACGAAATTATAATTTCCatcatgcaaaatt
tttgactttgatacAAGATTCTTGCAGAATCCCTCCAGTAGTGGGGCGCA
AAATTCGTGT
Run BLAST on NCBI

transcript from alignment at scaffold_206:295818..296027

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051958 ID=TCONS_00051958|Name=TCONS_00051958|organism=Clytia hemisphaerica|type=transcript|length=210bp|location=Sequence derived from alignment at scaffold_206:295818..296027 (Clytia hemisphaerica)
ACACGAATTTTGCGCCCCACTACTGGAGGGATTCTGCAAGAATCTTgtat
caaagtcaaaaattttgcatgatGGAAATTATAATTTCGTGAAATAGTAA
GATTTTCCGCTGGAATTGATTTTGTCAAGATTAGATTCTTTCTATTCAAG
AATACTGAAcaaaaaaaggaagaatttttggcgggaatttaatttggcat
atGGGGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032889XLOC_032889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051958-exon-scaffold_206-1491911889:295818..296027TCONS_00051958-exon-scaffold_206-1491911889:295818..296027Clytia hemisphaericaexon
TCONS_00051958-exon-scaffold_206-1510915933:295818..296027TCONS_00051958-exon-scaffold_206-1510915933:295818..296027Clytia hemisphaericaexon
TCONS_00051958-exon-scaffold_206-1575043694:295818..296027TCONS_00051958-exon-scaffold_206-1575043694:295818..296027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:295818..296027 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.82981	3.0712	9.26317	8.67206	13.8252	16.0657	0	8.78042	4.29659	5.04448	1.6365	0.878105	0	0	10.1996	2.40849	2.78648	2.03872	1.65222	3.00422	4.64141	4.14235	21.7349	12.6524	11.1958	8.14767
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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