|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052290 ID=TCONS_00052290|Name=TCONS_00052290|organism=Clytia hemisphaerica|type=transcript|length=1165bp
tgaaaataagaacatccgaagaacACTTTTgggctcaaaaagttaagagc
atccgaaggcatcaaatttttggatattcttataaaaaaagCAATGTACA
AAAAATGTCATCATCGGAATCACATATTGTGCAGATAGAGAGCCCATCAG
GGAAGAATAGCAAATCATTTGTCTTCCATTGGAGCCATCGAACAGCAAAA
GTATCAGATACCCGTGATAATTTTGAACCGAAAATCAATGAAACTCCTCT
GATAGATAAATCCCCAAAGGAGACCAAAAGCAAGCCTGATGCAAGCTATC
AATCATTAGCCAATAACGCATTTGATAATAGAAGATCTGTTTCACTGCTT
CCTCCAAATCAGATTGAAAATAATACCCAGCAGCCTCCTTGTGATGGATC
CACTTCCAAAGATTTTGCAGCTCAGAACTCGTCTGACTCTCCAGAATCAA
CGCAGAATCAACTGTTATCTCCTATGCTGATTCTAGATAACCAAATTTAT
CAAGATTCGCCTTTAAGCAAAGACAAGAGCTCGCTAGCGTcttcttcaaa
agaaaacagtGAAAATGGAGGAGCTAGTGAGATATCAACATCTCAAAATA
AGACTCTGAGCAAATATAAAGGTCCCATCTTAAAAATACCATCTTCAGAC
ACAAAACAGGTCACGCCATCTCATATGGAAGATAGTCCAGAAATCTCATC
TCCTTTGGTAACCAAAAAGCAACCTCATTCGCCGTCTCGGTTCCGTAGAA
ATCAACCAAAAAGTAGGACATTTAATGGAAAGCCTACACTATTACGTGCA
ATATCACATCTATCAAACCTTGATGCGAGCGATGTCTCTGAGAGTGAGGA
TGCGGATGGTCCCAGAAAaacaaaGATTTTAACACCTGGCTCTTTCCGCC
GCTTGAAACACATCCATCACCATCGCTCACAAACTATTTGTGTCAATCGA
ACCGCTTCCCGTGACAATCAGGAAGATGATAGTGGCTCAGGTGAAGGTTT
CGCATCACATTTGAGACATAGCTTCAGAGATTATTCAATCAAGAATTTTA
TTAAACGAAAACGAGCGAACAGTGATCCAAGCCATCGGTCAAGGtgaatt
tctcatttttgtacacgttttcttataagaacaaactatataagaacata
aggcttcgatggcca Run BLAST on NCBI protein sequence of TCONS_00052290-protein >TCONS_00052290-protein ID=TCONS_00052290-protein|Name=TCONS_00052290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
KIRTSEEHFWAQKVKSIRRHQIFGYSYKKSNVQKMSSSESHIVQIESPSG
KNSKSFVFHWSHRTAKVSDTRDNFEPKINETPLIDKSPKETKSKPDASYQ
SLANNAFDNRRSVSLLPPNQIENNTQQPPCDGSTSKDFAAQNSSDSPEST
QNQLLSPMLILDNQIYQDSPLSKDKSSLASSSKENSENGGASEISTSQNK
TLSKYKGPILKIPSSDTKQVTPSHMEDSPEISSPLVTKKQPHSPSRFRRN
QPKSRTFNGKPTLLRAISHLSNLDASDVSESEDADGPRKTKILTPGSFRR
LKHIHHHRSQTICVNRTASRDNQEDDSGSGEGFASHLRHSFRDYSIKNFI
KRKRANSDPSHRSR Run BLAST on NCBI transcript from alignment at scaffold_213:1135095..1138050+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052290 ID=TCONS_00052290|Name=TCONS_00052290|organism=Clytia hemisphaerica|type=transcript|length=2956bp|location=Sequence derived from alignment at scaffold_213:1135095..1138050+ (Clytia hemisphaerica)
tgaaaataagaacatccgaagaacACTTTTgggctcaaaaagttaagagc
atccgaaggcatcaaatttttggatattcttataaaaaaaggtgtatttc
gATAATTTAATCAAATATCTTATCTGTGCGAGTGACATTGGAGATATATT
TCATGAGCGAATCAAACTTATGATTTGCCTTAAAGACATAGTGTTTCAGG
TATTAAAACAGTGCAATGAGTAATGATTGGATAGTGAGATATTTATCAGT
ATTCTTCgaaaaaaactagaaaattttttgatcctaataaattttcaaag
aagagGATCGAGTTCTTGTCCTGTGAAGAAGTTTTTTCTGTATTTGTCAG
TATTTGTAAAGTGCAATTAGACCCAAAATTACAAACTCGTCTCCAATTTT
ACTgacaattttattgatttttttccacAACAGTTTtgttatttcttaaa
aaatgcAAATCTTTGGAATTGAAGTTATCAAGAAATGGAAGTGTCATTTA
AGAAGGTGCTTTATCAGCCTCTCTTCCACACCTCACTGtgataacacccc
tgtgtcacagacctggtTGGACTCacgccccactggaaaatctagATAAA
ATTTCTTCCCGGAAGCAAAATACCCTATAATTTTCAGCCCtattgggaaa
ttgactttgatttcatctatattgaaaattcaatgaaaaaaattgctcTA
TTTTCTATCCCCTACacttcgatagaaatttttattcacGCTGTAGGAAA
AAGTTCCTCTTGGgctctgagacaggggtgttgtgTGAGTGTATCAataa
ttattcattattttctctCCATATAGCAATGTACAAAAAATGTCATCATC
GGAATCACATATTGTGCAGATAGAGAGCCCATCAGGGAAGAATAGCAAAT
CATTTGTCTTCCATTGGAGCCATCGAACAGCAAAAGTATCAGATACCCGT
GATAATTTTGAACCGAAAATCAATGAAACTCCTCTGATAGATAAATCCCC
AAAGGAGACCAAAAGCAAGCCTGATGCAAGCTATCAATCATTAGCCAATA
ACGCATTTGATAATAGAAGATCTGTTTCACTGCTTCCTCCAAATCAGATT
GAAAATAATACCCAGCAGCCTCCTTGTGATGGATCCACTTCCAAAGATTT
TGCAGCTCAGAACTCGTCTGACTCTCCAGAATCAACGCAGAATCAACTGT
TATCTCCTATGCTGATTCTAGATAACCAAATTTATCAAGATTCGCCTTTA
AGCAAAGACAAGAGCTCGCTAGCGTcttcttcaaaagaaaacagtGAAAA
TGGAGGAGCTAGTGAGATATCAACATCTCAAAATAAGACTCTGAGCAAAT
ATAAAGGTCCCATCTTAAAAATACCATCTTCAGACACAAAACAGGTCACG
CCATCTCATATGGAAGATAGTCCAGAAATCTCATCTCCTTTGGTAACCAA
AAAGCAACCTCATTCGCCGTCTCGGTTCCGTAGAAATCAACCAAAAAGTA
GGACATTTAATGGAAAGCCTACACTATTACGTGCAATATCACATCTATCA
AACCTTGATGCGAGCGATGTCTCTGAGAGTGAGGATGCGGATGGTCCCAG
AAAaacaaagtaaattttttgACATTGCGCTCAGTGAGATGATGTAAAAA
CTTAAAGCGTAGTctagtggtagagcatccggatACGGTGCACAAGGTtc
tgggttcaacccccaggtTATACCAAATATTCCAAAAATGgaacttgatg
cctctctgcttaatactcagcaattaagagaaggatccaggtggagcaat
ccagggagaaagagtggcaccctctCCTACCTtgaggtagatagctatcg
aaagaggagccttcgggtcgcctccgactgaggttacttacttacttata
aaCCTAAATGACAAGAATGAATTACCTGAATGCTAAGCTGTGCGCCTTCC
CTCTGATATGTTTAGATAGGGGAAAATTCAGGCTAACCTGTTATTCAGAA
ATCCAATATATTATTAATCTCTAGCCactcaaatttttaattcaaacttA
ATGAAAACTAAAGATCTCACAAGATGACTAGCTTCAAATCCTTCAAAAGA
GATTCGCTCTTAGCCTTTGGGCTTAAACTCGATTGAAGCCACCAGCCTAC
TTATATTATACTTCCCTGTGTTATTTTGGAGATTAATTGCAGACATCAGC
TCTTCGTCGTGATAAGAATGTTCTCCTGATAATTAGCAGGTTAATTTGAT
TACCTTAATCAGGTTATCACTTTATTGATGGTCTGTATAGATAAGATTAA
AAGTGTACAAAAAGTTCCCAACCGTAAACTTCAATATCAGCAATTATTGT
TTGAGATTCCCATCACATAGGGAAAGAATGACGTTCTGGTacagcactgt
aagcttacagcgtaatccctGGATTTCGATGGATCTAATCCTTTGCATCG
GAGTGCCGCACGaagtttaggactattgggaaacAGCTCAGTTCCGTGTG
GTGTTCAAAATAAGCTTAGCTAACactccagtacagcgctgtaagcttac
agcgtaagcccaggcggtggTTCTGGAGGCCATTCTCTCTATATGTTTTT
AAACcagaatttactggttcttataaaaaggacCGCCTATAATAATATCC
GCTTTTTCTCCATAGGATTTTAACACCTGGCTCTTTCCGCCGCTTGAAAC
ACATCCATCACCATCGCTCACAAACTATTTGTGTCAATCGAACCGCTTCC
CGTGACAATCAGGAAGATGATAGTGGCTCAGGTGAAGGTTTCGCATCACA
TTTGAGACATAGCTTCAGAGATTATTCAATCAAGAATTTTATTAAACGAA
AACGAGCGAACAGTGATCCAAGCCATCGGTCAAGGtgaatttctcatttt
tgtacacgttttcttataagaacaaactatataagaacataaggcttcga
tggcca Coding sequence (CDS) from alignment at scaffold_213:1135095..1138050+ >TCONS_00052290 ID=TCONS_00052290|Name=TCONS_00052290|organism=Clytia hemisphaerica|type=CDS|length=3285bp|location=Sequence derived from alignment at scaffold_213:1135095..1138050+ (Clytia hemisphaerica)
aaaataagaacatccgaagaacACTTTTgggctcaaaaagttaagagcat
ccgaaggcatcaaatttttggatattcttataaaaaaagCAATGTACAAA
AAATGTCATCATCGGAATCACATATTGTGCAGATAGAGAGCCCATCAGGG
AAGAATAGCAAATCATTTGTCTTCCATTGGAGCCATCGAACAGCAAAAGT
ATCAGATACCCGTGATAATTTTGAACCGAAAATCAATGAAACTCCTCTGA
TAGATAAATCCCCAAAGGAGACCAAAAGCAAGCCTGATGCAAGCTATCAA
TCATTAGCCAATAACGCATTTGATAATAGAAGATCTGTTTCACTGCTTCC
TCCAAATCAGATTGAAAATAATACCCAGCAGCCTCCTTGTGATGGATCCA
CTTCCAAAGATTTTGCAGCTCAGAACTCGTCTGACTCTCCAGAATCAACG
CAGAATCAACTGTTATCTCCTATGCTGATTCTAGATAACCAAATTTATCA
AGATTCGCCTTTAAGCAAAGACAAGAGCTCGCTAGCGTcttcttcaaaag
aaaacagtGAAAATGGAGGAGCTAGTGAGATATCAACATCTCAAAATAAG
ACTCTGAGCAAATATAAAGGTCCCATCTTAAAAATACCATCTTCAGACAC
AAAACAGGTCACGCCATCTCATATGGAAGATAGTCCAGAAATCTCATCTC
CTTTGGTAACCAAAAAGCAACCTCATTCGCCGTCTCGGTTCCGTAGAAAT
CAACCAAAAAGTAGGACATTTAATGGAAAGCCTACACTATTACGTGCAAT
ATCACATCTATCAAACCTTGATGCGAGCGATGTCTCTGAGAGTGAGGATG
CGGATGGTCCCAGAAAaacaaaGATTTTAACACCTGGCTCTTTCCGCCGC
TTGAAACACATCCATCACCATCGCTCACAAACTATTTGTGTCAATCGAAC
CGCTTCCCGTGACAATCAGGAAGATGATAGTGGCTCAGGTGAAGGTTTCG
CATCACATTTGAGACATAGCTTCAGAGATTATTCAATCAAGAATTTTATT
AAACGAAAACGAGCGAACAGTGATCCAAGCCATCGGTCAAGGtgaaaaat
aagaacatccgaagaacACTTTTgggctcaaaaagttaagagcatccgaa
ggcatcaaatttttggatattcttataaaaaaagCAATGTACAAAAAATG
TCATCATCGGAATCACATATTGTGCAGATAGAGAGCCCATCAGGGAAGAA
TAGCAAATCATTTGTCTTCCATTGGAGCCATCGAACAGCAAAAGTATCAG
ATACCCGTGATAATTTTGAACCGAAAATCAATGAAACTCCTCTGATAGAT
AAATCCCCAAAGGAGACCAAAAGCAAGCCTGATGCAAGCTATCAATCATT
AGCCAATAACGCATTTGATAATAGAAGATCTGTTTCACTGCTTCCTCCAA
ATCAGATTGAAAATAATACCCAGCAGCCTCCTTGTGATGGATCCACTTCC
AAAGATTTTGCAGCTCAGAACTCGTCTGACTCTCCAGAATCAACGCAGAA
TCAACTGTTATCTCCTATGCTGATTCTAGATAACCAAATTTATCAAGATT
CGCCTTTAAGCAAAGACAAGAGCTCGCTAGCGTcttcttcaaaagaaaac
agtGAAAATGGAGGAGCTAGTGAGATATCAACATCTCAAAATAAGACTCT
GAGCAAATATAAAGGTCCCATCTTAAAAATACCATCTTCAGACACAAAAC
AGGTCACGCCATCTCATATGGAAGATAGTCCAGAAATCTCATCTCCTTTG
GTAACCAAAAAGCAACCTCATTCGCCGTCTCGGTTCCGTAGAAATCAACC
AAAAAGTAGGACATTTAATGGAAAGCCTACACTATTACGTGCAATATCAC
ATCTATCAAACCTTGATGCGAGCGATGTCTCTGAGAGTGAGGATGCGGAT
GGTCCCAGAAAaacaaaGATTTTAACACCTGGCTCTTTCCGCCGCTTGAA
ACACATCCATCACCATCGCTCACAAACTATTTGTGTCAATCGAACCGCTT
CCCGTGACAATCAGGAAGATGATAGTGGCTCAGGTGAAGGTTTCGCATCA
CATTTGAGACATAGCTTCAGAGATTATTCAATCAAGAATTTTATTAAACG
AAAACGAGCGAACAGTGATCCAAGCCATCGGTCAAGGtgaaaaataagaa
catccgaagaacACTTTTgggctcaaaaagttaagagcatccgaaggcat
caaatttttggatattcttataaaaaaagCAATGTACAAAAAATGTCATC
ATCGGAATCACATATTGTGCAGATAGAGAGCCCATCAGGGAAGAATAGCA
AATCATTTGTCTTCCATTGGAGCCATCGAACAGCAAAAGTATCAGATACC
CGTGATAATTTTGAACCGAAAATCAATGAAACTCCTCTGATAGATAAATC
CCCAAAGGAGACCAAAAGCAAGCCTGATGCAAGCTATCAATCATTAGCCA
ATAACGCATTTGATAATAGAAGATCTGTTTCACTGCTTCCTCCAAATCAG
ATTGAAAATAATACCCAGCAGCCTCCTTGTGATGGATCCACTTCCAAAGA
TTTTGCAGCTCAGAACTCGTCTGACTCTCCAGAATCAACGCAGAATCAAC
TGTTATCTCCTATGCTGATTCTAGATAACCAAATTTATCAAGATTCGCCT
TTAAGCAAAGACAAGAGCTCGCTAGCGTcttcttcaaaagaaaacagtGA
AAATGGAGGAGCTAGTGAGATATCAACATCTCAAAATAAGACTCTGAGCA
AATATAAAGGTCCCATCTTAAAAATACCATCTTCAGACACAAAACAGGTC
ACGCCATCTCATATGGAAGATAGTCCAGAAATCTCATCTCCTTTGGTAAC
CAAAAAGCAACCTCATTCGCCGTCTCGGTTCCGTAGAAATCAACCAAAAA
GTAGGACATTTAATGGAAAGCCTACACTATTACGTGCAATATCACATCTA
TCAAACCTTGATGCGAGCGATGTCTCTGAGAGTGAGGATGCGGATGGTCC
CAGAAAaacaaaGATTTTAACACCTGGCTCTTTCCGCCGCTTGAAACACA
TCCATCACCATCGCTCACAAACTATTTGTGTCAATCGAACCGCTTCCCGT
GACAATCAGGAAGATGATAGTGGCTCAGGTGAAGGTTTCGCATCACATTT
GAGACATAGCTTCAGAGATTATTCAATCAAGAATTTTATTAAACGAAAAC
GAGCGAACAGTGATCCAAGCCATCGGTCAAGGtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052290-exon-scaffold_213-1491911889:1135095..1135185 | TCONS_00052290-exon-scaffold_213-1491911889:1135095..1135185 | Clytia hemisphaerica | exon |
| TCONS_00052290-exon-scaffold_213-1510915933:1135095..1135185 | TCONS_00052290-exon-scaffold_213-1510915933:1135095..1135185 | Clytia hemisphaerica | exon |
| TCONS_00052290-exon-scaffold_213-1575043694:1135095..1135185 | TCONS_00052290-exon-scaffold_213-1575043694:1135095..1135185 | Clytia hemisphaerica | exon |
| TCONS_00052290-exon-scaffold_213-1491911889:1135921..1136703 | TCONS_00052290-exon-scaffold_213-1491911889:1135921..1136703 | Clytia hemisphaerica | exon |
| TCONS_00052290-exon-scaffold_213-1510915933:1135921..1136703 | TCONS_00052290-exon-scaffold_213-1510915933:1135921..1136703 | Clytia hemisphaerica | exon |
| TCONS_00052290-exon-scaffold_213-1575043694:1135921..1136703 | TCONS_00052290-exon-scaffold_213-1575043694:1135921..1136703 | Clytia hemisphaerica | exon |
| TCONS_00052290-exon-scaffold_213-1491911889:1137760..1138050 | TCONS_00052290-exon-scaffold_213-1491911889:1137760..1138050 | Clytia hemisphaerica | exon |
| TCONS_00052290-exon-scaffold_213-1510915933:1137760..1138050 | TCONS_00052290-exon-scaffold_213-1510915933:1137760..1138050 | Clytia hemisphaerica | exon |
| TCONS_00052290-exon-scaffold_213-1575043694:1137760..1138050 | TCONS_00052290-exon-scaffold_213-1575043694:1137760..1138050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1135095..1138050 + |
Blast
The following BLAST results are available for this feature:
|
