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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052351 ID=TCONS_00052351|Name=TCONS_00052351|organism=Clytia hemisphaerica|type=transcript|length=382bp
AGGTCTTGGAAGAATCACTAACTTACAAAAAGAAATGTGAGGAACTCCTT
CGAACTGAAGCTGAATTACGTGCTCAGTTAGCACTATATACAGAGAAGTT
TGAGGAGTTCCAAACGACACTGACGAAAAGTAACGAAGTGTTTGCCACCT
TCAAAAAAGATATGGATACGATGACAAAGACCATTCGGAAATTGGAAAAA
GAGTCAAATATGTGGAAGAACAGATGGGAAAATACGAACCACTCACTTCT
TCAGATGGTCGATGAGCGCACTCAAAATCAACAAACTATAAGCAGTCAAA
AgaccaaaatcgaaaaattggaaaGACTTTGTCGCGCACTGCAAGTCGAA
AGGAAATCTCTTAGACAACAGTTGGACGAACA Run BLAST on NCBI transcript from alignment at scaffold_213:542438..544207- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052351 ID=TCONS_00052351|Name=TCONS_00052351|organism=Clytia hemisphaerica|type=transcript|length=1770bp|location=Sequence derived from alignment at scaffold_213:542438..544207- (Clytia hemisphaerica)
AGGTCTTGGAAGAATCACTAACTTACAAAAAGAAATGTGAGGAACTCCTT
CGAACTGAAGCTGAATTACGTGCTCAGGTAAGTTCGGAAATAAACGCTTT
CACATCAAAATTGTACTTGTTGTATTAAGCTCACTCTGTACCCTGTACTC
ACGTGTATCGCTTCGTAGTACACTCTATGCGCATTGTCTGTTTGATAACA
AATTCCCGTACGGAGACCTCTGCGATTAAGTATGATTTTAGAGAACAACA
CTTCTCTCGTCGTCTCCCTTCTCTCGCCAACACTCCATCAATCGTAGATA
CTAGGTCTGTGTAAAGACAATATTAAGCGTAGCATTCGAAGGGATAAGAA
AACATTTACTTTGGAGTAATGGATAGGGCTGGACTTGTTGGTTTGCCGTC
ACCTGACCGACACTACATCGAAATCTGCCGACCCCAAAAATGTTTTGACA
TACGGCAAGCCAACATTTTGTTATGGTCAGCCTAGAATGATTTACCGATA
TACAGCCAAGAATCCATCGATGTCTCAAGATCAAGAATTTATGTTATTGC
TGCAACACCTAGGTGTTGGAATTAATCTTGTGTGTAATTTTCCACTTCAG
TTAGCACTATATACAGAGAAGTTTGAGGAGTTCCAAACGACACTGACGAA
AAGTAACGAAGTGTTTGCCACCTTCAAAAAAGATATGGATACGGTAAGGA
GATTGGCTGAAACGTCATGTCATCCATTTCAGTTTTTTATTATTCAACCT
TGACCTCGATTTGGGTAGTAAGCCGTCCCTTCTGAATGGACTACTTACCA
TGTCGGCTTTTGACATCTCGTAAAGAATTTGGGTTCTTGAGACTTTTTCA
AGACCAAAATGTACTGAAGCCTGATTTTCAAAGAATGAATACTGAACAGT
TAGTATAAGTTGATTACGGATAGAAAAAAGATCTGCCTTGTTGCAATTAT
CCATTCCATTTGGTTCTTTCACATTAGATGACAAAGACCATTCGGAAATT
GGAAAAAGAGTCAAATATGTGGAAGAACAGATGGGAAAATACGAACCACT
CACTTCTTCAGATGGTCGATGAGGTAACGTTGCACTACTTTTTAACTAAG
AGGAGATAGTTAAAACATGGAGTACTTTCATTCTCAACTTAAGTTGAGGT
AGAATCTGAGGATGTCTGTATGTCACCTCAAAACCCTGGGACAGGCTAGA
GACTTCAGAAATAGTCCGATTGAATTGACATTTTGCACACCAGTTCTTTG
GGAGAATATCTGGCGGGGTTTTTTTTTCATTTTTTGAAAATTTTGATTTT
TAGGTGCGTGGTCACAATTTTTAGCACCAAAACAAGGCTAAAATTGTAGG
GCAGGCTACAGACTTCAAAAATGGTTCGATTTGGTTGAATTTGGTTACTT
TTTTATCAATTTTACAATTGGGCCTACATTTGATTTGAAAAGACTGAAGT
TGAGCCCAGTGTATGTTAGCACGTTCGACAGTGGGGATCTTCCAGAAAAG
ATTCATGGGGATAGAGGATGACTATCAAAATTATTGACACTCGGAAAGAA
AACTTTAGTCTTTAGACTGTTTCAACGTGGTTCAAACCGTTCAAATAGGT
TCGTTTTACTTTTAAGGAGTTCTACATTCAATTCAATTATATTTCTCTTT
ACAGCGCACTCAAAATCAACAAACTATAAGCAGTCAAAAGACCAAAATCG
AAAAATTGGAAAGACTTTGTCGCGCACTGCAAGTCGAAAGGAAATCTCTT
AGACAACAGTTGGACGAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052351-exon-scaffold_213-1575043694:544131..544207 | TCONS_00052351-exon-scaffold_213-1575043694:544131..544207 | Clytia hemisphaerica | exon |
| TCONS_00052351-exon-scaffold_213-1575043694:543515..543607 | TCONS_00052351-exon-scaffold_213-1575043694:543515..543607 | Clytia hemisphaerica | exon |
| TCONS_00052351-exon-scaffold_213-1575043694:543135..543230 | TCONS_00052351-exon-scaffold_213-1575043694:543135..543230 | Clytia hemisphaerica | exon |
| TCONS_00052351-exon-scaffold_213-1575043694:542438..542553 | TCONS_00052351-exon-scaffold_213-1575043694:542438..542553 | Clytia hemisphaerica | exon |
| TCONS_00052351-exon-scaffold_213-1510915933:544131..544207 | TCONS_00052351-exon-scaffold_213-1510915933:544131..544207 | Clytia hemisphaerica | exon |
| TCONS_00052351-exon-scaffold_213-1510915933:543515..543607 | TCONS_00052351-exon-scaffold_213-1510915933:543515..543607 | Clytia hemisphaerica | exon |
| TCONS_00052351-exon-scaffold_213-1510915933:543135..543230 | TCONS_00052351-exon-scaffold_213-1510915933:543135..543230 | Clytia hemisphaerica | exon |
| TCONS_00052351-exon-scaffold_213-1510915933:542438..542553 | TCONS_00052351-exon-scaffold_213-1510915933:542438..542553 | Clytia hemisphaerica | exon |
| TCONS_00052351-exon-scaffold_213-1491911889:544131..544207 | TCONS_00052351-exon-scaffold_213-1491911889:544131..544207 | Clytia hemisphaerica | exon |
| TCONS_00052351-exon-scaffold_213-1491911889:543515..543607 | TCONS_00052351-exon-scaffold_213-1491911889:543515..543607 | Clytia hemisphaerica | exon |
| TCONS_00052351-exon-scaffold_213-1491911889:543135..543230 | TCONS_00052351-exon-scaffold_213-1491911889:543135..543230 | Clytia hemisphaerica | exon |
| TCONS_00052351-exon-scaffold_213-1491911889:542438..542553 | TCONS_00052351-exon-scaffold_213-1491911889:542438..542553 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:542438..544207 - |
Blast
BLAST of TCONS_00052351 vs. Swiss-Prot (Human)
Match: TXLNA (Alpha-taxilin OS=Homo sapiens GN=TXLNA PE=1 SV=3) HSP 1 Score: 100.523 bits (249), Expect = 2.744e-25 Identity = 52/92 (56.52%), Postives = 74/92 (80.43%), Query Frame = 3
Query: 87 YTEKFEEFQTTLTKSNEVFATFXXXXXXXXXXIRKLEKESNMWKNRWENTNHSLLQMVDERTQNQQTISSQKTKIEKLERLCRALQVERKSL 362
YTEKFEEFQ TL+KS+EVF TFK++M+ MTK I+KLEKE+ M+++RWE++N +LL+M +E+T + + + KI++LE+LCRALQ ER L
Sbjct: 390 YTEKFEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKETTMYRSRWESSNKALLEMAEEKTVRDKELEGLQVKIQRLEKLCRALQTERNDL 481
The following BLAST results are available for this feature:
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